Rmu_sc0001741.1_g000003

HPC2 and ubinuclein domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001741.1
Physical Location & Seq
Forward (+)
9134 .. 13854
4721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001741.1_g000003.1.cds

Sequence Viewer

Length: 1455 bp
atggacgaccagaaggccggccccgaatcctcgaggccctccacctcgtttctcaaagccggcgaccggcaaatgttcacggtggagctccgacccggcgagaccaccatagtctcctggaagaagctcgtcagggacactagcaaggtcaatggcctgcctccgcccgctgccactgccactgcccctgaccctccccccaacgctcaccctggcctcgagtctcgtatagctccggtacaaccttctggagagggagagggagaggaagggaaagatgaagctgcgccgaatcgttttagtgctgtgattgagaagattgagcgcctatatatgggtaaagatagtagcgacgatgaagatcaaaatattcctgatgacgatcagtatgatactgaggactcttttattgatgatgctgagttggatgaatattttgaagttgataattctgctataaaacatgacggattctttgttaacaggggccaactagaacggataaacacaactgctgcattacctaaccagcaaccaaagaaaaggagaagaaaagaggcaaagagcccccgtgaaactgatgacagtcacgtgccaaataaacaagcaaagttaggtaagacagccgcagcaaagattacatcgggacttgcaaagaactcatctgctctcactactattgctgtaaccacggaacaccgtgaagatgtgaaatttcagaatccattgaactcttccggttattcatccactaaaaagtctgctgattctaaaacagttatgaatccttctcctttgaaagcattggatggagatgcttctgcactgcaagcagaggtgaaggatattgataagtctaagtcaggaatcctgcttcctaaggactcgagtaatagatttaaagatgccggtgggtcctctgatgcatcgtatcataagtatcatgataaaaatgcttattcgcaaaccaaaacccagtcgggtagactatctggcaacgctgatgagctggaatcatcagttcgggcgaaagtgaaaaatgggatccgtcaactgcctgaccttaacctctcggacgggaagtactctgttccaactacaagaaacttaaaggatatgattagtatgggtctatcagccaaaaaggagaaagatgacaggtttcaacagatcaagaaggaagttatagatatggttaagataaatgtatcctctttggagtctaaggatcctcgacggtggctactttcaggtggtggcggtcttgtgttgttgactgcgttgggtgtcatttcacctttctatagtctctttcttggtggtgcaggcagggctactcgacggggctccttgctcctacgctggtgcctaattctcctcgtcgtcggtgctagctgcggtgatggtgggtctagggttgatatgagtttggatcggagcactagtgaagagtga

Protein Analysis

484

Amino Acids

52.61

Weight (kDa)

6.39

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 1365
AccI GTMKAC 1 cut(s) 985
AciI CCGC 5 cut(s) 164, 168, 627, 1260, 1398
AclWI GGATC 5 cut(s) 1039, 1052, 1223, 1236, 1440
AcsI RAATTY 1 cut(s) 713
AcvI CACGTG 1 cut(s) 592
AfaI GTAC 2 cut(s) 240, 1085
AfiI CCNNNNNNNGG 2 cut(s) 66, 334
AgsI TTSAA 4 cut(s) 440, 730, 799, 1166
AhlI ACTAGT 1 cut(s) 1442
AjnI CCWGG 2 cut(s) 116, 211
AluBI AGCT 6 cut(s) 88, 127, 233, 284, 1009, 1395
AluI AGCT 6 cut(s) 88, 127, 233, 284, 1009, 1395
Alw21I GWGCWC 2 cut(s) 90, 1442
Alw26I GTCTC 4 cut(s) 95, 118, 228, 1313
AlwI GGATC 5 cut(s) 1039, 1052, 1223, 1236, 1440
Ama87I CYCGRG 3 cut(s) 31, 218, 886
AoxI GGCC 6 cut(s) 15, 19, 35, 154, 214, 487
ApeKI GCWGC 5 cut(s) 170, 284, 515, 629, 1395
ApoI RAATTY 1 cut(s) 713
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AspLEI GCGC 2 cut(s) 289, 327
AspS9I GGNCC 4 cut(s) 20, 36, 487, 915
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 4 cut(s) 200, 850, 1287, 1412
AsuNHI GCTAGC 1 cut(s) 1391
AvaI CYCGRG 3 cut(s) 31, 218, 886
AvaII GGWCC 1 cut(s) 915
AxyI CCTNAGG 1 cut(s) 879
BamHI GGATCC 2 cut(s) 1044, 1228
BanI GGYRCC 1 cut(s) 1365
BanII GRGCYC 3 cut(s) 90, 569, 1349
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 2 cut(s) 90, 1442
BbvI GCAGC 5 cut(s) 157, 271, 502, 641, 1382
BccI CCATC 2 cut(s) 803, 1397
BciT130I CCWGG 2 cut(s) 118, 213
BciVI GTATCC 1 cut(s) 1219
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 4 cut(s) 95, 118, 228, 1313
BcuI ACTAGT 1 cut(s) 1442
BfaI CTAG 5 cut(s) 141, 494, 1392, 1413, 1443
BfmI CTRYAG 1 cut(s) 1303
BfoI RGCGCY 1 cut(s) 328
BfuI GTATCC 1 cut(s) 1219
BisI GCNGC 6 cut(s) 171, 285, 516, 627, 630, 1396
BlsI GCNGC 6 cut(s) 172, 286, 517, 628, 631, 1397
BmcAI AGTACT 1 cut(s) 1085
Bme1390I CCNGG 3 cut(s) 96, 118, 213
Bme18I GGWCC 1 cut(s) 915
BmeT110I CYCGRG 3 cut(s) 31, 218, 886
BmgT120I GGNCC 4 cut(s) 20, 36, 487, 915
BmiI GGNNCC 7 cut(s) 22, 488, 916, 1046, 1230, 1348, 1367
BmrFI CCNGG 3 cut(s) 96, 118, 213
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 5 cut(s) 406, 805, 895, 913, 935
BmtI GCTAGC 1 cut(s) 1395
BmuI ACTGGG 1 cut(s) 970
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 592
BsaBI GATNNNNATC 2 cut(s) 360, 381
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 211, 690
BsaWI WCCGGW 2 cut(s) 235, 737
BsaXI ACNNNNNCTCC 1 cut(s) 1429
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 334
Bse118I RCCGGY 4 cut(s) 17, 59, 66, 908
Bse1I ACTGG 1 cut(s) 976
Bse21I CCTNAGG 1 cut(s) 879
Bse8I GATNNNNATC 2 cut(s) 360, 381
BseBI CCWGG 2 cut(s) 118, 213
BseDI CCNNGG 2 cut(s) 211, 690
BseGI GGATG 3 cut(s) 433, 746, 814
BseJI GATNNNNATC 2 cut(s) 360, 381
BseLI CCNNNNNNNGG 2 cut(s) 66, 334
BseMII CTCAG 2 cut(s) 387, 411
BseNI ACTGG 1 cut(s) 976
BseRI GAGGAG 1 cut(s) 1367
BseXI GCAGC 5 cut(s) 157, 271, 502, 641, 1382
BsgI GTGCAG 2 cut(s) 807, 1344
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 6 cut(s) 17, 21, 37, 156, 216, 489
BshNI GGYRCC 1 cut(s) 1365
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 90, 1442
BsiHKCI CYCGRG 3 cut(s) 31, 218, 886
BsiSI CCGG 7 cut(s) 18, 60, 67, 96, 236, 738, 909
BslFI GGGAC 2 cut(s) 149, 660
BslI CCNNNNNNNGG 2 cut(s) 66, 334
BsmAI GTCTC 4 cut(s) 95, 118, 228, 1313
BsmFI GGGAC 2 cut(s) 149, 660
BsnI GGCC 6 cut(s) 17, 21, 37, 156, 216, 489
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 3 cut(s) 31, 218, 886
Bsp1286I GDGCHC 4 cut(s) 90, 569, 1349, 1442
Bsp143I GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
BspACI CCGC 5 cut(s) 164, 168, 627, 1260, 1398
BspANI GGCC 6 cut(s) 17, 21, 37, 156, 216, 489
BspCNI CTCAG 2 cut(s) 388, 412
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 7 cut(s) 22, 488, 916, 1046, 1230, 1348, 1367
BspOI GCTAGC 1 cut(s) 1395
BspPI GGATC 5 cut(s) 1039, 1052, 1223, 1236, 1440
BspT107I GGYRCC 1 cut(s) 1365
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 4 cut(s) 17, 59, 66, 908
BsrI ACTGG 1 cut(s) 976
BssAI RCCGGY 4 cut(s) 17, 59, 66, 908
BssECI CCNNGG 2 cut(s) 211, 690
BssMI GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
Bst2UI CCWGG 2 cut(s) 118, 213
Bst4CI ACNGT 5 cut(s) 82, 587, 701, 778, 1239
Bst6I CTCTTC 2 cut(s) 739, 1443
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 7 cut(s) 19, 61, 158, 168, 831, 1327, 1393
BstDEI CTNAG 5 cut(s) 396, 420, 858, 879, 1224
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 3 cut(s) 433, 746, 814
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 289, 327
BstKTI GATC 6 cut(s) 364, 385, 1047, 1173, 1231, 1435
BstMAI GTCTC 4 cut(s) 95, 118, 228, 1313
BstMBI GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 176, 830, 1331
BstNI CCWGG 2 cut(s) 118, 213
BstSCI CCNGG 3 cut(s) 94, 116, 211
BstSFI CTRYAG 1 cut(s) 1303
BstV1I GCAGC 5 cut(s) 157, 271, 502, 641, 1382
BstX2I RGATCY 2 cut(s) 1044, 1228
BstYI RGATCY 2 cut(s) 1044, 1228
Bsu36I CCTNAGG 1 cut(s) 879
BsuI GTATCC 1 cut(s) 1219
BsuRI GGCC 6 cut(s) 17, 21, 37, 156, 216, 489
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 3 cut(s) 433, 746, 814
BtsI GCAGTG 3 cut(s) 174, 180, 824
BtsIMutI CAGTG 3 cut(s) 174, 180, 824
Cac8I GCNNGC 7 cut(s) 19, 61, 158, 168, 831, 1327, 1393
CciI TCATGA 1 cut(s) 943
CfoI GCGC 2 cut(s) 289, 327
Cfr10I RCCGGY 4 cut(s) 17, 59, 66, 908
Cfr13I GGNCC 4 cut(s) 20, 36, 487, 915
Csp6I GTAC 2 cut(s) 239, 1084
CviAII CATG 2 cut(s) 464, 944
CviQI GTAC 2 cut(s) 239, 1084
DdeI CTNAG 5 cut(s) 396, 420, 858, 879, 1224
DpnI GATC 6 cut(s) 363, 384, 1046, 1172, 1230, 1434
DpnII GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
DraI TTTAAA 1 cut(s) 901
Eam1104I CTCTTC 2 cut(s) 739, 1443
EarI CTCTTC 2 cut(s) 739, 1443
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 3 cut(s) 90, 569, 1349
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 915
Eco53kI GAGCTC 1 cut(s) 88
Eco72I CACGTG 1 cut(s) 592
Eco81I CCTNAGG 1 cut(s) 879
Eco88I CYCGRG 3 cut(s) 31, 218, 886
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 2 cut(s) 36, 915
EcoRII CCWGG 2 cut(s) 116, 211
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 3 cut(s) 90, 569, 1349
FaeI CATG 2 cut(s) 467, 947
FaqI GGGAC 2 cut(s) 149, 660
FatI CATG 2 cut(s) 463, 943
FauI CCCGC 1 cut(s) 175
FblI GTMKAC 1 cut(s) 985
Fnu4HI GCNGC 6 cut(s) 171, 285, 516, 627, 630, 1396
FokI GGATG 3 cut(s) 440, 733, 821
FriOI GRGCYC 3 cut(s) 90, 569, 1349
FseI GGCCGGCC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 171, 285, 516, 627, 630, 1396
FspBI CTAG 5 cut(s) 141, 494, 1392, 1413, 1443
GlaI GCGC 2 cut(s) 288, 326
GluI GCNGC 6 cut(s) 171, 285, 516, 627, 630, 1396
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 6 cut(s) 17, 21, 37, 156, 216, 489
HapII CCGG 7 cut(s) 18, 60, 67, 96, 236, 738, 909
HhaI GCGC 2 cut(s) 289, 327
Hin1II CATG 2 cut(s) 467, 947
Hin6I GCGC 2 cut(s) 287, 325
HinP1I GCGC 2 cut(s) 287, 325
HincII GTYRAC 3 cut(s) 481, 1052, 1275
HindII GTYRAC 3 cut(s) 481, 1052, 1275
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 7 cut(s) 18, 60, 67, 96, 236, 738, 909
HphI GGTGA 4 cut(s) 200, 850, 1287, 1412
Hpy166II GTNNAC 5 cut(s) 78, 481, 986, 1052, 1275
Hpy188I TCNGA 5 cut(s) 92, 720, 922, 1075, 1437
Hpy188III TCNNGA 6 cut(s) 249, 374, 645, 864, 944, 1174
Hpy8I GTNNAC 5 cut(s) 78, 481, 986, 1052, 1275
Hpy99I CGWCG 5 cut(s) 356, 1239, 1344, 1385, 1388
HpyAV CCTTC 6 cut(s) 7, 255, 263, 798, 835, 1171
HpyCH4III ACNGT 5 cut(s) 82, 587, 701, 778, 1239
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 6 cut(s) 518, 653, 824, 829, 926, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 830, 1331
HpyF3I CTNAG 5 cut(s) 396, 420, 858, 879, 1224
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 2 cut(s) 467, 947
HspAI GCGC 2 cut(s) 287, 325
KroI GCCGGC 2 cut(s) 17, 59
KroNI GCCGGC 2 cut(s) 19, 61
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
LmnI GCTCC 6 cut(s) 85, 93, 238, 1352, 1359, 1437
Lsp1109I GCAGC 5 cut(s) 157, 271, 502, 641, 1382
LweI GCATC 5 cut(s) 406, 805, 895, 913, 935
MaeI CTAG 5 cut(s) 141, 494, 1392, 1413, 1443
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 587, 685
MalI GATC 6 cut(s) 363, 384, 1046, 1172, 1230, 1434
MboI GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
MboII GAAGA 6 cut(s) 133, 328, 371, 561, 716, 726
MflI RGATCY 2 cut(s) 1044, 1228
MhlI GDGCHC 4 cut(s) 90, 569, 1349, 1442
MluCI AATT 3 cut(s) 448, 713, 1371
MlyI GAGTC 4 cut(s) 230, 395, 878, 1229
MmeI TCCRAC 3 cut(s) 115, 405, 1118
Mph1103I ATGCAT 1 cut(s) 928
MroNI GCCGGC 2 cut(s) 17, 59
MseI TTAA 5 cut(s) 480, 900, 1065, 1109, 1197
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 7 cut(s) 18, 60, 67, 96, 236, 738, 909
MspR9I CCNGG 3 cut(s) 96, 118, 213
MvaI CCWGG 2 cut(s) 118, 213
MwoI GCNNNNNNNGC 3 cut(s) 176, 830, 1331
NaeI GCCGGC 2 cut(s) 19, 61
NciI CCSGG 1 cut(s) 96
NdeII GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
NgoMIV GCCGGC 2 cut(s) 17, 59
NheI GCTAGC 1 cut(s) 1391
NlaIII CATG 2 cut(s) 467, 947
NlaIV GGNNCC 7 cut(s) 22, 488, 916, 1046, 1230, 1348, 1367
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 928
PaeR7I CTCGAG 3 cut(s) 31, 218, 886
PagI TCATGA 1 cut(s) 943
PdiI GCCGGC 2 cut(s) 19, 61
PfeI GAWTC 8 cut(s) 26, 292, 471, 721, 767, 784, 867, 1013
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 6 cut(s) 172, 286, 517, 628, 631, 1397
PleI GAGTC 4 cut(s) 229, 395, 878, 1228
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 4 cut(s) 229, 395, 878, 1228
Ppu21I YACGTR 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 116, 211
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 2 cut(s) 116, 211
PspN4I GGNNCC 7 cut(s) 22, 488, 916, 1046, 1230, 1348, 1367
PspPI GGNCC 4 cut(s) 20, 36, 487, 915
PspPPI RGGWCCY 1 cut(s) 915
PspXI VCTCGAGB 3 cut(s) 31, 218, 886
PsuI RGATCY 2 cut(s) 1044, 1228
RigI GGCCGGCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 240, 1085
RsaNI GTAC 2 cut(s) 239, 1084
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 5 cut(s) 480, 900, 1065, 1109, 1197
SatI GCNGC 6 cut(s) 171, 285, 516, 627, 630, 1396
Sau3AI GATC 6 cut(s) 361, 382, 1044, 1170, 1228, 1432
Sau96I GGNCC 4 cut(s) 20, 36, 487, 915
ScaI AGTACT 1 cut(s) 1085
SchI GAGTC 4 cut(s) 230, 395, 878, 1229
ScrFI CCNGG 3 cut(s) 96, 118, 213
SduI GDGCHC 4 cut(s) 90, 569, 1349, 1442
SfaNI GCATC 5 cut(s) 406, 805, 895, 913, 935
SfcI CTRYAG 1 cut(s) 1303
Sfr274I CTCGAG 3 cut(s) 31, 218, 886
SinI GGWCC 1 cut(s) 915
SlaI CTCGAG 3 cut(s) 31, 218, 886
SmlI CTYRAG 3 cut(s) 31, 218, 886
SmoI CTYRAG 3 cut(s) 31, 218, 886
SpeI ACTAGT 1 cut(s) 1442
Sse9I AATT 3 cut(s) 448, 713, 1371
SsiI CCGC 5 cut(s) 164, 168, 627, 1260, 1398
SspI AATATT 2 cut(s) 370, 434
SspMI CTAG 5 cut(s) 141, 494, 1392, 1413, 1443
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 94, 116, 211
TaaI ACNGT 5 cut(s) 82, 587, 701, 778, 1239
TaiI ACGT 1 cut(s) 594
TaqI TCGA 5 cut(s) 32, 219, 887, 1234, 1339
TasI AATT 3 cut(s) 448, 713, 1371
TatI WGTACW 1 cut(s) 1083
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 8 cut(s) 26, 292, 471, 721, 767, 784, 867, 1013
Tru1I TTAA 5 cut(s) 480, 900, 1065, 1109, 1197
Tru9I TTAA 5 cut(s) 480, 900, 1065, 1109, 1197
TscAI CASTG 3 cut(s) 181, 187, 831
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 5 cut(s) 170, 284, 515, 629, 1395
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 5 cut(s) 294, 372, 444, 735, 797
TspGWI ACGGA 4 cut(s) 483, 514, 707, 1037
TspRI CASTG 3 cut(s) 181, 187, 831
VpaK11BI GGWCC 1 cut(s) 915
XapI RAATTY 1 cut(s) 713
XhoI CTCGAG 3 cut(s) 31, 218, 886
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 5 cut(s) 141, 494, 1392, 1413, 1443
ZrmI AGTACT 1 cut(s) 1085
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.