Rh6CG362400

HPC2 and ubinuclein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003763
Physical Location & Seq
Forward (+)
55101992 .. 55116650
14659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG362400.1

Sequence Viewer

Length: 1143 bp
ATGGGTAAAGATAGTAGTGACGATGAAGATCAAAATATTCCTGATGACGATCAGTATGATACTGAGGACTCATTTATTGATGATGCTGAGTTGGATGAATATTTTGAAGTGGATAATTCAGCTATAAAACATGACGGATTCTTTGTTAACAGGGGCCAACTAGAACGGATAAACACAACTGCTGCATTACCTAACCAGCAACCAAAGAAAAGGAGAAGAAAAGAGGCAAAGAGCCCCGGTGAAACTGATGACTGTCACGTGCCAAATAAACAAGCAAAGTTAGGTAAGACAGCTGCAGCAAAGATTACATCGGGACTTGCAAAGAACTCATCTGCTCTCATTACTATTGCTGTAACCACGGAACACCGTGAAGATGTGGAATTTCAGAATCCATTGAACTCTTCCGGTTATTCATCCACTAAAAAGTCTGCTGATTCTAAAACAGTTATGAATCCTTCTCCGTTGAAAGCATTGGATGGAGATGCTTCTGCACTGCAAGTAGAGGTGAAGGATATTGATAAGTCTAAGTCAGGAATCCTGCTTCCTAAGGACTCGAGTAATAGATTTAAAGATTCCGGTGGGTCCTCTGATGCATCGTATCATAAATATCATGATAAAAATGCTTATTCGCAAACCAAAACCCAGTCGGGTAGACTATCTGGCAACGCTGATGAGCTGGAATCATCAGTTCGGGCGAAAGTGAAAAATGGGATCCGTCAACTGCTTGACCTTAACCTCTCGGACGGGAAAGCGATTATCGATGCAGTAGGAGGGATTCCGAGACCTCTGTTAAACATCAGCCGCGAAAATTTTGCGAGAGGTTTTAACGGCATAGTGGGTTTCAACCTGATCCCTCAGGCAAACACAGTCAATTATCTTTTAGCAGCCTATTCAATCCTTTATATTGGAATAGGAGGCTATGTTGGTAGAATCCGTAACCTTACTACTGTTGCTGATCGCGCGGTGCCAGGTAGTAACATTGCTTTTATATTCATCAGCATGTATTTGAGCCCTGGAGAGGCAGTAATTGTTGCTCAGGAAGTTGTCAATACAATGGCTGCGAAGGGATATGATCTGGGACAAGATGCATTAATCAAGGCCGATCTGGGACAAGATGTATTAATCAAGGCCAAAAGCTTCTGA

Protein Analysis

380

Amino Acids

41.13

Weight (kDa)

5.54

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HUN PF08729 9 - 55 1.1e-12 HPC2 and ubinuclein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 964
AccI GTMKAC 1 cut(s) 652
AccII CGCG 3 cut(s) 804, 960, 962
AciI CCGC 2 cut(s) 802, 962
AclWI GGATC 3 cut(s) 706, 719, 844
AcsI RAATTY 2 cut(s) 380, 808
AcvI CACGTG 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 1018
AgsI TTSAA 5 cut(s) 107, 397, 466, 844, 894
AjnI CCWGG 2 cut(s) 967, 1012
AluBI AGCT 4 cut(s) 122, 293, 676, 1137
AluI AGCT 4 cut(s) 122, 293, 676, 1137
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 3 cut(s) 706, 719, 844
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 3 cut(s) 154, 1098, 1128
ApeKI GCWGC 5 cut(s) 182, 293, 296, 884, 1058
ApoI RAATTY 2 cut(s) 380, 808
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AseI ATTAAT 2 cut(s) 1091, 1121
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 2 cut(s) 154, 582
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 251, 517
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 582
AxyI CCTNAGG 2 cut(s) 546, 855
BamHI GGATCC 1 cut(s) 711
BanI GGYRCC 1 cut(s) 964
BanII GRGCYC 2 cut(s) 236, 1013
BbrPI CACGTG 1 cut(s) 259
BbvI GCAGC 5 cut(s) 169, 280, 308, 896, 1045
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 844
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 2 cut(s) 969, 1014
BcnI CCSGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 6 cut(s) 183, 294, 297, 802, 885, 1059
BlsI GCNGC 6 cut(s) 184, 295, 298, 803, 886, 1060
Bme1390I CCNGG 3 cut(s) 237, 969, 1014
Bme18I GGWCC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 154, 582
BmiI GGNNCC 4 cut(s) 155, 583, 713, 966
BmrFI CCNGG 3 cut(s) 237, 969, 1014
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 6 cut(s) 73, 472, 580, 602, 751, 1075
BmuI ACTGGG 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 1035
Bpu10I CCTNAGC 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 237
Bsa29I ATCGAT 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 2 cut(s) 27, 48
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 3 cut(s) 235, 357, 1012
BsaWI WCCGGW 2 cut(s) 404, 575
BsaXI ACNNNNNCTCC 4 cut(s) 906, 936, 1008, 1038
Bsc4I CCNNNNNNNGG 1 cut(s) 1018
Bse1I ACTGG 1 cut(s) 643
Bse21I CCTNAGG 2 cut(s) 546, 855
Bse3DI GCAATG 1 cut(s) 978
Bse8I GATNNNNATC 2 cut(s) 27, 48
BseBI CCWGG 2 cut(s) 969, 1014
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 235, 357, 1012
BseGI GGATG 3 cut(s) 100, 413, 481
BseJI GATNNNNATC 2 cut(s) 27, 48
BseLI CCNNNNNNNGG 1 cut(s) 1018
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 4 cut(s) 54, 78, 869, 1049
BseNI ACTGG 1 cut(s) 643
BseXI GCAGC 5 cut(s) 169, 280, 308, 896, 1045
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 3 cut(s) 804, 960, 962
BshFI GGCC 3 cut(s) 156, 1100, 1130
BshNI GGYRCC 1 cut(s) 964
BshVI ATCGAT 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 3 cut(s) 237, 405, 576
BslFI GGGAC 3 cut(s) 327, 1092, 1122
BslI CCNNNNNNNGG 1 cut(s) 1018
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 3 cut(s) 327, 1092, 1122
BsnI GGCC 3 cut(s) 156, 1100, 1130
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 236, 1013
Bsp143I GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
BspACI CCGC 2 cut(s) 802, 962
BspANI GGCC 3 cut(s) 156, 1100, 1130
BspCNI CTCAG 4 cut(s) 55, 79, 868, 1048
BspDI ATCGAT 1 cut(s) 759
BspFNI CGCG 3 cut(s) 804, 960, 962
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 4 cut(s) 155, 583, 713, 966
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 3 cut(s) 706, 719, 844
BspT107I GGYRCC 1 cut(s) 964
BspTNI GGTCTC 1 cut(s) 775
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 235, 357, 1012
BssMI GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
Bst2UI CCWGG 2 cut(s) 969, 1014
Bst4CI ACNGT 5 cut(s) 254, 368, 445, 868, 949
Bst6I CTCTTC 1 cut(s) 406
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 6 cut(s) 63, 87, 525, 546, 855, 1035
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 100, 413, 481
BstFNI CGCG 3 cut(s) 804, 960, 962
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 7 cut(s) 31, 52, 714, 852, 958, 1075, 1105
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 959
BstNI CCWGG 2 cut(s) 969, 1014
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 3 cut(s) 235, 967, 1012
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 3 cut(s) 804, 960, 962
BstV1I GCAGC 5 cut(s) 169, 280, 308, 896, 1045
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
Bsu15I ATCGAT 1 cut(s) 759
Bsu36I CCTNAGG 2 cut(s) 546, 855
BsuRI GGCC 3 cut(s) 156, 1100, 1130
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 100, 413, 481
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 1 cut(s) 491
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 154, 582
ClaI ATCGAT 1 cut(s) 759
CviAII CATG 3 cut(s) 131, 611, 1000
DdeI CTNAG 6 cut(s) 63, 87, 525, 546, 855, 1035
DpnI GATC 7 cut(s) 30, 51, 713, 851, 957, 1074, 1104
DpnII GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
DraI TTTAAA 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 236, 1013
Eco31I GGTCTC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 582
Eco72I CACGTG 1 cut(s) 259
Eco81I CCTNAGG 2 cut(s) 546, 855
Eco88I CYCGRG 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 967, 1012
EcoT22I ATGCAT 2 cut(s) 595, 1090
EcoT38I GRGCYC 2 cut(s) 236, 1013
FaeI CATG 3 cut(s) 134, 614, 1003
FaqI GGGAC 3 cut(s) 327, 1092, 1122
FatI CATG 3 cut(s) 130, 610, 999
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 6 cut(s) 183, 294, 297, 802, 885, 1059
FokI GGATG 3 cut(s) 107, 400, 488
FriOI GRGCYC 2 cut(s) 236, 1013
Fsp4HI GCNGC 6 cut(s) 183, 294, 297, 802, 885, 1059
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 961
GluI GCNGC 6 cut(s) 183, 294, 297, 802, 885, 1059
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 3 cut(s) 156, 1100, 1130
HapII CCGG 3 cut(s) 237, 405, 576
HhaI GCGC 1 cut(s) 962
Hin1II CATG 3 cut(s) 134, 614, 1003
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HincII GTYRAC 2 cut(s) 148, 719
HindII GTYRAC 2 cut(s) 148, 719
HindIII AAGCTT 1 cut(s) 1135
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 237, 405, 576
HphI GGTGA 2 cut(s) 251, 517
Hpy166II GTNNAC 3 cut(s) 148, 653, 719
Hpy188I TCNGA 5 cut(s) 387, 589, 742, 780, 1142
Hpy188III TCNNGA 5 cut(s) 41, 312, 531, 611, 1037
Hpy8I GTNNAC 3 cut(s) 148, 653, 719
HpyAV CCTTC 3 cut(s) 465, 502, 1057
HpyCH4III ACNGT 5 cut(s) 254, 368, 445, 868, 949
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 8 cut(s) 185, 296, 320, 491, 496, 593, 764, 1088
HpyF10VI GCNNNNNNNGC 1 cut(s) 959
HpyF3I CTNAG 6 cut(s) 63, 87, 525, 546, 855, 1035
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 134, 614, 1003
HspAI GCGC 1 cut(s) 960
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
Lsp1109I GCAGC 5 cut(s) 169, 280, 308, 896, 1045
LweI GCATC 6 cut(s) 73, 472, 580, 602, 751, 1075
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 5 cut(s) 17, 254, 352, 935, 974
MalI GATC 7 cut(s) 30, 51, 713, 851, 957, 1074, 1104
MboI GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
MboII GAAGA 4 cut(s) 38, 228, 383, 393
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 236, 1013
MluCI AATT 5 cut(s) 115, 380, 808, 871, 1026
MlyI GAGTC 2 cut(s) 62, 545
MmeI TCCRAC 1 cut(s) 72
Mph1103I ATGCAT 2 cut(s) 595, 1090
MseI TTAA 7 cut(s) 147, 567, 732, 791, 825, 1091, 1121
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 3 cut(s) 237, 405, 576
MspR9I CCNGG 3 cut(s) 237, 969, 1014
MvaI CCWGG 2 cut(s) 969, 1014
MvnI CGCG 3 cut(s) 804, 960, 962
MwoI GCNNNNNNNGC 1 cut(s) 959
NciI CCSGG 1 cut(s) 237
NdeII GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
NlaIII CATG 3 cut(s) 134, 614, 1003
NlaIV GGNNCC 4 cut(s) 155, 583, 713, 966
NmuCI GTSAC 2 cut(s) 17, 254
NsiI ATGCAT 2 cut(s) 595, 1090
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 553
PagI TCATGA 1 cut(s) 610
PfeI GAWTC 9 cut(s) 138, 388, 434, 451, 534, 572, 680, 775, 930
PkrI GCNGC 6 cut(s) 184, 295, 298, 803, 886, 1060
PleI GAGTC 2 cut(s) 62, 545
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 2 cut(s) 62, 545
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 582
PshBI ATTAAT 2 cut(s) 1091, 1121
Psp5II RGGWCCY 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 967, 1012
PspCI CACGTG 1 cut(s) 259
PspGI CCWGG 2 cut(s) 967, 1012
PspN4I GGNNCC 4 cut(s) 155, 583, 713, 966
PspPI GGNCC 2 cut(s) 154, 582
PspPPI RGGWCCY 1 cut(s) 582
PspXI VCTCGAGB 1 cut(s) 553
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 998
SaqAI TTAA 7 cut(s) 147, 567, 732, 791, 825, 1091, 1121
SatI GCNGC 6 cut(s) 183, 294, 297, 802, 885, 1059
Sau3AI GATC 7 cut(s) 28, 49, 711, 849, 955, 1072, 1102
Sau96I GGNCC 2 cut(s) 154, 582
SchI GAGTC 2 cut(s) 62, 545
ScrFI CCNGG 3 cut(s) 237, 969, 1014
SduI GDGCHC 2 cut(s) 236, 1013
SfaNI GCATC 6 cut(s) 73, 472, 580, 602, 751, 1075
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 1 cut(s) 582
SlaI CTCGAG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
Sse9I AATT 5 cut(s) 115, 380, 808, 871, 1026
SsiI CCGC 2 cut(s) 802, 962
SspI AATATT 2 cut(s) 37, 101
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 235, 967, 1012
TaaI ACNGT 5 cut(s) 254, 368, 445, 868, 949
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 554, 759
TasI AATT 5 cut(s) 115, 380, 808, 871, 1026
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 9 cut(s) 138, 388, 434, 451, 534, 572, 680, 775, 930
Tru1I TTAA 7 cut(s) 147, 567, 732, 791, 825, 1091, 1121
Tru9I TTAA 7 cut(s) 147, 567, 732, 791, 825, 1091, 1121
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 2 cut(s) 17, 254
TseI GCWGC 5 cut(s) 182, 293, 296, 884, 1058
Tsp45I GTSAC 2 cut(s) 17, 254
TspDTI ATGAA 5 cut(s) 39, 111, 402, 464, 982
TspGWI ACGGA 6 cut(s) 150, 181, 374, 450, 704, 923
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 582
VspI ATTAAT 2 cut(s) 1091, 1121
XapI RAATTY 2 cut(s) 380, 808
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 652
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 2 cut(s) 595, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.