HhH-GPD superfamily base excision DNA repair protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07930 AT3G07930 AT3G07930 AT3G07930 |
| fragaria_vesca | FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 |
| malus_domestica | MD00G1164900.v1.1 |
| prunus_persica | Prupe.4G286600_v2.0.a1 |
| pyrus_communis | pycom520g01030 pycom520g01040 |
| rosa_chinensis | RchiOBHm_Chr3g0497491 |
| rosa_laevigata | RLG00000022456 |
| rosa_multiflora | Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00387970 |
| rosa_rugosa | Rorug03G0293200 Rorug03G0293300 |
| rosa_samantha | Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900 |
| rosa_wichuraiana | Rw0G018500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1022, 1523 |
| AatII | GACGTC | 1 cut(s) | 1053 |
| Acc36I | ACCTGC | 3 cut(s) | 881, 1022, 1523 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 604 |
| AciI | CCGC | 6 cut(s) | 95, 101, 147, 319, 402, 405 |
| AclWI | GGATC | 2 cut(s) | 1199, 1831 |
| AcoI | YGGCCR | 1 cut(s) | 595 |
| AcsI | RAATTY | 2 cut(s) | 470, 625 |
| AcuI | CTGAAG | 3 cut(s) | 243, 1077, 1510 |
| AcyI | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 604, 1207 |
| AgsI | TTSAA | 7 cut(s) | 475, 848, 1088, 1435, 1625, 1652, 1725 |
| AluBI | AGCT | 6 cut(s) | 701, 839, 966, 979, 1616, 1703 |
| AluI | AGCT | 6 cut(s) | 701, 839, 966, 979, 1616, 1703 |
| Alw21I | GWGCWC | 1 cut(s) | 1484 |
| Alw26I | GTCTC | 4 cut(s) | 19, 113, 732, 1756 |
| AlwI | GGATC | 2 cut(s) | 1199, 1831 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 662 |
| Ama87I | CYCGRG | 1 cut(s) | 980 |
| AoxI | GGCC | 2 cut(s) | 522, 595 |
| ApeKI | GCWGC | 4 cut(s) | 43, 46, 49, 429 |
| ApoI | RAATTY | 2 cut(s) | 470, 625 |
| AseI | ATTAAT | 1 cut(s) | 828 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1636 |
| AspLEI | GCGC | 2 cut(s) | 159, 1827 |
| AsuC2I | CCSGG | 3 cut(s) | 359, 1685, 1841 |
| AsuHPI | GGTGA | 5 cut(s) | 803, 1085, 1190, 1544, 1700 |
| AsuII | TTCGAA | 1 cut(s) | 1630 |
| AvaI | CYCGRG | 1 cut(s) | 980 |
| BalI | TGGCCA | 1 cut(s) | 597 |
| BbsI | GAAGAC | 1 cut(s) | 1121 |
| Bbv12I | GWGCWC | 1 cut(s) | 1484 |
| BbvCI | CCTCAGC | 2 cut(s) | 81, 87 |
| BbvI | GCAGC | 4 cut(s) | 55, 58, 61, 441 |
| BccI | CCATC | 6 cut(s) | 245, 584, 606, 708, 893, 1312 |
| BceAI | ACGGC | 1 cut(s) | 109 |
| BcnI | CCSGG | 3 cut(s) | 359, 1685, 1841 |
| BcoDI | GTCTC | 4 cut(s) | 19, 113, 732, 1756 |
| BfaI | CTAG | 3 cut(s) | 1212, 1281, 1460 |
| BfmI | CTRYAG | 3 cut(s) | 41, 1029, 1516 |
| BfuAI | ACCTGC | 3 cut(s) | 881, 1022, 1523 |
| BisI | GCNGC | 5 cut(s) | 44, 47, 50, 403, 430 |
| BlpI | GCTNAGC | 1 cut(s) | 1704 |
| BlsI | GCNGC | 5 cut(s) | 45, 48, 51, 404, 431 |
| Bme1390I | CCNGG | 3 cut(s) | 359, 1685, 1841 |
| BmeT110I | CYCGRG | 1 cut(s) | 980 |
| BmiI | GGNNCC | 2 cut(s) | 504, 895 |
| BmrFI | CCNGG | 3 cut(s) | 359, 1685, 1841 |
| BmsI | GCATC | 4 cut(s) | 657, 668, 775, 1405 |
| BpiI | GAAGAC | 1 cut(s) | 1121 |
| Bpu10I | CCTNAGC | 2 cut(s) | 81, 87 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1704 |
| Bpu14I | TTCGAA | 1 cut(s) | 1630 |
| BpuEI | CTTGAG | 1 cut(s) | 1262 |
| BpuMI | CCSGG | 3 cut(s) | 359, 1685, 1841 |
| Bsa29I | ATCGAT | 1 cut(s) | 1835 |
| BsaHI | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| BsaI | GGTCTC | 3 cut(s) | 19, 732, 1756 |
| BsaJI | CCNNGG | 2 cut(s) | 525, 1684 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 729, 759, 1405, 1435 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 604, 1207 |
| Bse1I | ACTGG | 3 cut(s) | 110, 201, 506 |
| Bse3DI | GCAATG | 1 cut(s) | 1680 |
| BseCI | ATCGAT | 1 cut(s) | 1835 |
| BseDI | CCNNGG | 2 cut(s) | 525, 1684 |
| BseGI | GGATG | 2 cut(s) | 1177, 1252 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 604, 1207 |
| BseMI | GCAATG | 1 cut(s) | 1680 |
| BseMII | CTCAG | 4 cut(s) | 95, 101, 1358, 1479 |
| BseNI | ACTGG | 3 cut(s) | 110, 201, 506 |
| BseRI | GAGGAG | 7 cut(s) | 194, 648, 789, 998, 1400, 1492, 1505 |
| BseXI | GCAGC | 4 cut(s) | 55, 58, 61, 441 |
| BsgI | GTGCAG | 1 cut(s) | 1575 |
| Bsh1285I | CGRYCG | 2 cut(s) | 319, 358 |
| BshFI | GGCC | 2 cut(s) | 524, 597 |
| BshVI | ATCGAT | 1 cut(s) | 1835 |
| BsiEI | CGRYCG | 2 cut(s) | 319, 358 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1484 |
| BsiHKCI | CYCGRG | 1 cut(s) | 980 |
| BsiSI | CCGG | 3 cut(s) | 358, 1684, 1840 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 604, 1207 |
| BsmAI | GTCTC | 4 cut(s) | 19, 113, 732, 1756 |
| BsmBI | CGTCTC | 1 cut(s) | 113 |
| BsnI | GGCC | 2 cut(s) | 524, 597 |
| Bso31I | GGTCTC | 3 cut(s) | 19, 732, 1756 |
| BsoBI | CYCGRG | 1 cut(s) | 980 |
| Bsp119I | TTCGAA | 1 cut(s) | 1630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1484 |
| Bsp143I | GATC | 3 cut(s) | 1191, 1832, 1836 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1704 |
| BspACI | CCGC | 6 cut(s) | 95, 101, 147, 319, 402, 405 |
| BspANI | GGCC | 2 cut(s) | 524, 597 |
| BspCNI | CTCAG | 4 cut(s) | 94, 100, 1357, 1480 |
| BspDI | ATCGAT | 1 cut(s) | 1835 |
| BspHI | TCATGA | 2 cut(s) | 859, 1143 |
| BspLI | GGNNCC | 2 cut(s) | 504, 895 |
| BspMAI | CTGCAG | 3 cut(s) | 45, 1033, 1520 |
| BspMI | ACCTGC | 3 cut(s) | 881, 1022, 1523 |
| BspPI | GGATC | 2 cut(s) | 1199, 1831 |
| BspT104I | TTCGAA | 1 cut(s) | 1630 |
| BspTNI | GGTCTC | 3 cut(s) | 19, 732, 1756 |
| BsrDI | GCAATG | 1 cut(s) | 1680 |
| BsrI | ACTGG | 3 cut(s) | 110, 201, 506 |
| BssECI | CCNNGG | 2 cut(s) | 525, 1684 |
| BssMI | GATC | 3 cut(s) | 1191, 1832, 1836 |
| BssNI | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| Bst4CI | ACNGT | 2 cut(s) | 1260, 1274 |
| Bst6I | CTCTTC | 1 cut(s) | 260 |
| BstACI | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| BstBI | TTCGAA | 1 cut(s) | 1630 |
| BstC8I | GCNNGC | 3 cut(s) | 657, 1254, 1497 |
| BstDEI | CTNAG | 5 cut(s) | 81, 87, 1344, 1488, 1704 |
| BstF5I | GGATG | 2 cut(s) | 1177, 1252 |
| BstHHI | GCGC | 2 cut(s) | 159, 1827 |
| BstKTI | GATC | 3 cut(s) | 1194, 1835, 1839 |
| BstMAI | GTCTC | 4 cut(s) | 19, 113, 732, 1756 |
| BstMBI | GATC | 3 cut(s) | 1191, 1832, 1836 |
| BstMCI | CGRYCG | 2 cut(s) | 319, 358 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 49, 197, 311, 1262, 1861 |
| BstNSI | RCATGY | 2 cut(s) | 890, 1499 |
| BstSCI | CCNGG | 3 cut(s) | 357, 1683, 1839 |
| BstSFI | CTRYAG | 3 cut(s) | 41, 1029, 1516 |
| BstV1I | GCAGC | 4 cut(s) | 55, 58, 61, 441 |
| BstV2I | GAAGAC | 1 cut(s) | 1121 |
| Bsu15I | ATCGAT | 1 cut(s) | 1835 |
| BsuRI | GGCC | 2 cut(s) | 524, 597 |
| BsuTUI | ATCGAT | 1 cut(s) | 1835 |
| BtgZI | GCGATG | 1 cut(s) | 264 |
| BtsCI | GGATG | 2 cut(s) | 1177, 1252 |
| BtsI | GCAGTG | 1 cut(s) | 38 |
| BtsIMutI | CAGTG | 2 cut(s) | 38, 1053 |
| BveI | ACCTGC | 3 cut(s) | 881, 1022, 1523 |
| Cac8I | GCNNGC | 3 cut(s) | 657, 1254, 1497 |
| CaiI | CAGNNNCTG | 1 cut(s) | 662 |
| CciI | TCATGA | 2 cut(s) | 859, 1143 |
| CfoI | GCGC | 2 cut(s) | 159, 1827 |
| ClaI | ATCGAT | 1 cut(s) | 1835 |
| CseI | GACGC | 2 cut(s) | 130, 320 |
| CviAII | CATG | 8 cut(s) | 389, 860, 887, 941, 1127, 1144, 1310, 1496 |
| DdeI | CTNAG | 5 cut(s) | 81, 87, 1344, 1488, 1704 |
| DpnI | GATC | 3 cut(s) | 1193, 1834, 1838 |
| DpnII | GATC | 3 cut(s) | 1191, 1832, 1836 |
| EaeI | YGGCCR | 1 cut(s) | 595 |
| Eam1104I | CTCTTC | 1 cut(s) | 260 |
| EarI | CTCTTC | 1 cut(s) | 260 |
| EciI | GGCGGA | 3 cut(s) | 84, 90, 420 |
| Eco31I | GGTCTC | 3 cut(s) | 19, 732, 1756 |
| Eco32I | GATATC | 1 cut(s) | 781 |
| Eco57I | CTGAAG | 3 cut(s) | 243, 1077, 1510 |
| Eco88I | CYCGRG | 1 cut(s) | 980 |
| EcoRV | GATATC | 1 cut(s) | 781 |
| Esp3I | CGTCTC | 1 cut(s) | 113 |
| FaeI | CATG | 8 cut(s) | 392, 863, 890, 944, 1130, 1147, 1313, 1499 |
| FatI | CATG | 8 cut(s) | 388, 859, 886, 940, 1126, 1143, 1309, 1495 |
| Fnu4HI | GCNGC | 5 cut(s) | 44, 47, 50, 403, 430 |
| FokI | GGATG | 2 cut(s) | 1184, 1259 |
| Fsp4HI | GCNGC | 5 cut(s) | 44, 47, 50, 403, 430 |
| FspBI | CTAG | 3 cut(s) | 1212, 1281, 1460 |
| GlaI | GCGC | 2 cut(s) | 158, 1826 |
| GluI | GCNGC | 5 cut(s) | 44, 47, 50, 403, 430 |
| HaeIII | GGCC | 2 cut(s) | 524, 597 |
| HapII | CCGG | 3 cut(s) | 358, 1684, 1840 |
| HgaI | GACGC | 2 cut(s) | 130, 320 |
| HhaI | GCGC | 2 cut(s) | 159, 1827 |
| Hin1I | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| Hin1II | CATG | 8 cut(s) | 392, 863, 890, 944, 1130, 1147, 1313, 1499 |
| Hin6I | GCGC | 2 cut(s) | 157, 1825 |
| HinP1I | GCGC | 2 cut(s) | 157, 1825 |
| HincII | GTYRAC | 1 cut(s) | 1681 |
| HindII | GTYRAC | 1 cut(s) | 1681 |
| HinfI | GANTC | 5 cut(s) | 382, 584, 1025, 1543, 1844 |
| HpaI | GTTAAC | 1 cut(s) | 1681 |
| HpaII | CCGG | 3 cut(s) | 358, 1684, 1840 |
| HphI | GGTGA | 5 cut(s) | 803, 1085, 1190, 1544, 1700 |
| Hpy166II | GTNNAC | 2 cut(s) | 206, 1681 |
| Hpy188I | TCNGA | 9 cut(s) | 381, 583, 589, 676, 898, 1347, 1529, 1767, 1799 |
| Hpy188III | TCNNGA | 9 cut(s) | 221, 475, 622, 812, 860, 913, 1144, 1659, 1848 |
| Hpy8I | GTNNAC | 2 cut(s) | 206, 1681 |
| Hpy99I | CGWCG | 3 cut(s) | 130, 218, 353 |
| HpyAV | CCTTC | 8 cut(s) | 11, 253, 1099, 1141, 1534, 1578, 1741, 1778 |
| HpyCH4III | ACNGT | 2 cut(s) | 1260, 1274 |
| HpyCH4IV | ACGT | 2 cut(s) | 422, 1050 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 49, 197, 311, 1262, 1861 |
| HpyF3I | CTNAG | 5 cut(s) | 81, 87, 1344, 1488, 1704 |
| HpySE526I | ACGT | 2 cut(s) | 422, 1050 |
| Hsp92I | GRCGYC | 3 cut(s) | 122, 312, 1050 |
| Hsp92II | CATG | 8 cut(s) | 392, 863, 890, 944, 1130, 1147, 1313, 1499 |
| HspAI | GCGC | 2 cut(s) | 157, 1825 |
| KspAI | GTTAAC | 1 cut(s) | 1681 |
| Kzo9I | GATC | 3 cut(s) | 1191, 1832, 1836 |
| LmnI | GCTCC | 4 cut(s) | 392, 976, 1479, 1492 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 58, 61, 441 |
| LweI | GCATC | 4 cut(s) | 657, 668, 775, 1405 |
| MaeI | CTAG | 3 cut(s) | 1212, 1281, 1460 |
| MaeII | ACGT | 2 cut(s) | 422, 1050 |
| MaeIII | GTNAC | 3 cut(s) | 959, 1039, 1051 |
| MalI | GATC | 3 cut(s) | 1193, 1834, 1838 |
| MboI | GATC | 3 cut(s) | 1191, 1832, 1836 |
| MhlI | GDGCHC | 1 cut(s) | 1484 |
| MlsI | TGGCCA | 1 cut(s) | 597 |
| MluNI | TGGCCA | 1 cut(s) | 597 |
| MlyI | GAGTC | 1 cut(s) | 1552 |
| MmeI | TCCRAC | 2 cut(s) | 715, 1777 |
| Mox20I | TGGCCA | 1 cut(s) | 597 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1636 |
| MscI | TGGCCA | 1 cut(s) | 597 |
| MseI | TTAA | 5 cut(s) | 60, 828, 1098, 1176, 1680 |
| MslI | CAYNNNNRTG | 5 cut(s) | 945, 1011, 1142, 1148, 1401 |
| Msp20I | TGGCCA | 1 cut(s) | 597 |
| MspI | CCGG | 3 cut(s) | 358, 1684, 1840 |
| MspR9I | CCNGG | 3 cut(s) | 359, 1685, 1841 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 49, 197, 311, 1262, 1861 |
| NciI | CCSGG | 3 cut(s) | 359, 1685, 1841 |
| NdeII | GATC | 3 cut(s) | 1191, 1832, 1836 |
| NlaIII | CATG | 8 cut(s) | 392, 863, 890, 944, 1130, 1147, 1313, 1499 |
| NlaIV | GGNNCC | 2 cut(s) | 504, 895 |
| NmeAIII | GCCGAG | 1 cut(s) | 550 |
| NmuCI | GTSAC | 2 cut(s) | 959, 1051 |
| NspI | RCATGY | 2 cut(s) | 890, 1499 |
| NspV | TTCGAA | 1 cut(s) | 1630 |
| PaeI | GCATGC | 1 cut(s) | 1499 |
| PaeR7I | CTCGAG | 1 cut(s) | 980 |
| PagI | TCATGA | 2 cut(s) | 859, 1143 |
| PaqCI | CACCTGC | 2 cut(s) | 1022, 1523 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1636 |
| PfeI | GAWTC | 4 cut(s) | 382, 584, 1025, 1844 |
| PflFI | GACNNNGTC | 1 cut(s) | 124 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 604 |
| PfoI | TCCNGGA | 1 cut(s) | 1839 |
| PkrI | GCNGC | 5 cut(s) | 45, 48, 51, 404, 431 |
| PleI | GAGTC | 1 cut(s) | 1551 |
| PpsI | GAGTC | 1 cut(s) | 1551 |
| PshBI | ATTAAT | 1 cut(s) | 828 |
| PspN4I | GGNNCC | 2 cut(s) | 504, 895 |
| PspXI | VCTCGAGB | 1 cut(s) | 980 |
| PstI | CTGCAG | 3 cut(s) | 45, 1033, 1520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 662 |
| PsyI | GACNNNGTC | 1 cut(s) | 124 |
| RseI | CAYNNNNRTG | 5 cut(s) | 945, 1011, 1142, 1148, 1401 |
| SaqAI | TTAA | 5 cut(s) | 60, 828, 1098, 1176, 1680 |
| SatI | GCNGC | 5 cut(s) | 44, 47, 50, 403, 430 |
| Sau3AI | GATC | 3 cut(s) | 1191, 1832, 1836 |
| SchI | GAGTC | 1 cut(s) | 1552 |
| ScrFI | CCNGG | 3 cut(s) | 359, 1685, 1841 |
| SduI | GDGCHC | 1 cut(s) | 1484 |
| SfaNI | GCATC | 4 cut(s) | 657, 668, 775, 1405 |
| SfcI | CTRYAG | 3 cut(s) | 41, 1029, 1516 |
| Sfr274I | CTCGAG | 1 cut(s) | 980 |
| SfuI | TTCGAA | 1 cut(s) | 1630 |
| SlaI | CTCGAG | 1 cut(s) | 980 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 945, 1011, 1142, 1148, 1401 |
| SmlI | CTYRAG | 2 cut(s) | 980, 1241 |
| SmoI | CTYRAG | 2 cut(s) | 980, 1241 |
| SphI | GCATGC | 1 cut(s) | 1499 |
| SsiI | CCGC | 6 cut(s) | 95, 101, 147, 319, 402, 405 |
| SspI | AATATT | 1 cut(s) | 436 |
| SspMI | CTAG | 3 cut(s) | 1212, 1281, 1460 |
| StyD4I | CCNGG | 3 cut(s) | 357, 1683, 1839 |
| TaaI | ACNGT | 2 cut(s) | 1260, 1274 |
| TaiI | ACGT | 2 cut(s) | 425, 1053 |
| TaqI | TCGA | 4 cut(s) | 56, 981, 1630, 1835 |
| TaqII | GACCGA | 1 cut(s) | 756 |
| TauI | GCSGC | 1 cut(s) | 405 |
| TfiI | GAWTC | 4 cut(s) | 382, 584, 1025, 1844 |
| Tru1I | TTAA | 5 cut(s) | 60, 828, 1098, 1176, 1680 |
| Tru9I | TTAA | 5 cut(s) | 60, 828, 1098, 1176, 1680 |
| TscAI | CASTG | 2 cut(s) | 45, 1060 |
| TseFI | GTSAC | 2 cut(s) | 959, 1051 |
| TseI | GCWGC | 4 cut(s) | 43, 46, 49, 429 |
| Tsp45I | GTSAC | 2 cut(s) | 959, 1051 |
| TspGWI | ACGGA | 5 cut(s) | 360, 603, 744, 1133, 1312 |
| TspRI | CASTG | 2 cut(s) | 45, 1060 |
| Tth111I | GACNNNGTC | 1 cut(s) | 124 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 604 |
| VspI | ATTAAT | 1 cut(s) | 828 |
| XapI | RAATTY | 2 cut(s) | 470, 625 |
| XceI | RCATGY | 2 cut(s) | 890, 1499 |
| XhoI | CTCGAG | 1 cut(s) | 980 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1636 |
| XspI | CTAG | 3 cut(s) | 1212, 1281, 1460 |
| ZraI | GACGTC | 1 cut(s) | 1051 |