Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0007267

Physical Location & Seq

Genomic Coordinates Forward (+)

779138 .. 779960

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTGTAGATTGAATACACTGTTCTTATGTCCTTGTTACTTAATGGACTATATGCAGGCAAAAAGAGTTATATCTGATCTCTTTACATTGTGTCCCGATGCAAAAGCTGCCACTGAGGTTGCGACAGAGGATATAGAAAAGACTATAAAAACTCTTGGTTTACATAAGAAGAGGGCGTTGATGATACAGCATTTGTCTCAGGAGTATTTGAAGGAAAGCTGGACCCATGTTACTCAGTTGCATGGTGTTGGCAAGTATGCAGCTGACGCTTATGCAATATTTTGCACTGGTAGGTGGGAGCGAGTAAAACCTACAGACCACATGCTAAATTTCTACTGGGAATTTCTGCGCAAAACCGTACCGAGGGACAGTGTAAGAGAGAGTTTGGTTGGAGAGCAGATAGTTGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

138

Amino Acids

15.85

Weight (kDa)

8.27

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07930 AT3G07930 AT3G07930 AT3G07930
fragaria_vesca	FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870
malus_domestica	MD00G1164900.v1.1
prunus_persica	Prupe.4G286600_v2.0.a1
pyrus_communis	pycom520g01030 pycom520g01040
rosa_chinensis	RchiOBHm_Chr3g0497491
rosa_laevigata	RLG00000022456
rosa_multiflora	Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013
rosa_roxburghii	Rroxscaffold_6G00387970
rosa_rugosa	Rorug03G0293200 Rorug03G0293300
rosa_samantha	Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900
rosa_wichuraiana	Rw0G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	350
AcsI	RAATTY	2 cut(s)	328, 341
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	13, 211
AluBI	AGCT	3 cut(s)	107, 219, 263
AluI	AGCT	3 cut(s)	107, 219, 263
Alw26I	GTCTC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	107, 260
ApoI	RAATTY	2 cut(s)	328, 341
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	94, 272
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	108, 261
BlsI	GCNGC	2 cut(s)	109, 262
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	292, 341
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	105, 212, 248
BseNI	ACTGG	2 cut(s)	292, 341
BseXI	GCAGC	2 cut(s)	94, 272
BslFI	GGGAC	2 cut(s)	78, 380
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	78, 380
Bsp143I	GATC	1 cut(s)	76
BspCNI	CTCAG	3 cut(s)	106, 211, 247
BspLI	GGNNCC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	292, 341
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	21, 358, 371
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	114, 198, 234
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 266
BstNSI	RCATGY	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	94, 272
BtsIMutI	CAGTG	4 cut(s)	17, 111, 285, 376
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	359
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	3 cut(s)	227, 242, 322
CviJI	RGCY	3 cut(s)	107, 219, 263
CviKI_1	RGCY	3 cut(s)	107, 219, 263
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	114, 198, 234
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	222
FaeI	CATG	3 cut(s)	230, 245, 325
FaqI	GGGAC	2 cut(s)	78, 380
FatI	CATG	3 cut(s)	226, 241, 321
Fnu4HI	GCNGC	2 cut(s)	108, 261
Fsp4HI	GCNGC	2 cut(s)	108, 261
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	108, 261
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	230, 245, 325
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	95, 200
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	21, 358, 371
HpyCH4V	TGCA	6 cut(s)	55, 101, 241, 260, 275, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 266
HpyF3I	CTNAG	3 cut(s)	114, 198, 234
Hsp92II	CATG	3 cut(s)	230, 245, 325
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	41, 185, 205, 273, 322, 393
Lsp1109I	GCAGC	2 cut(s)	94, 272
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	35, 229
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	2 cut(s)	328, 341
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	109, 121, 165, 357
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	107, 266
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	230, 245, 325
NlaIV	GGNNCC	1 cut(s)	224
NsbI	TGCGCA	1 cut(s)	350
NspI	RCATGY	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	109, 262
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	108, 261
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	6 cut(s)	109, 120, 221, 265, 296, 313
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	328, 341
SspI	AATATT	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	21, 358, 371
TasI	AATT	2 cut(s)	328, 341
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	4 cut(s)	24, 118, 292, 376
TseI	GCWGC	2 cut(s)	107, 260
TspRI	CASTG	4 cut(s)	24, 118, 292, 376
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	2 cut(s)	328, 341
XceI	RCATGY	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.