Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0003800

Physical Location & Seq

Genomic Coordinates Forward (+)

971150 .. 972881

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGTAATGGGGAGCAGAAGCCGCCAAAGCAGCAGCAGCGGCAGCAGGCGGGTGAGGGCGTTCAAGCGATGGATGAAACAGGAAGGGATTGAATGTAGCGACGCCCTCGAACTGCGGGACGACGGAGCTACCGCCGGAGGAATGGGAATCAGTGTCAGAGCCGTCGGTGACCTCAAGGAAGAGGACGTGGTGGCCAGAATTCCAAAGCTGGCGTGCCTCACAATCAGAACCGCCGCCGCTGCTGCCGAACCTGAGGCTGCCGAGGCTTTGGAAAATGAGGAGGAGTTGGTCGGGCTGGCGGTGGCTCTGATGTACGAGAGGAGCCTGGGGGAGCGCTCCCGATGGGCCCCGTACCTGGAGCTGTTGAGCGAAGAAGAGGCGGCGGCGTTGCCGTTGGTTTGGAGTGCCCAAGAGGTGGAGCGTCTGCTGCAAGGGACGGAGCTGGAGGCGGCGACGGTCAAGGCGGAGAGGTCTGATATGAGGAAGCAGTGGAAGAAGAGCGTTGAGCCCTTGCTGCTCATGCTTCTTAATTCCAATTCCTCCAATTCATTCCAATTCCAGGACTACTTAGTAGCAAGGACATTCATTTCTTCTCGGTCGTTTCAGATTGATGGTTACCATGGAATCGGAATGGTTCCTTTGGCTGACCTGTTTAATCACAAAACCGCAGCTGAGGATGTCCACTTGATGACCTCTCCTCAGAGTGGTCAATCTGACTCTGACACCCCCCAGCAAACCACAGAATCTGCTTCTGCTCCTTCTGATGCTTCCTGCGAGGAGGACGAGGACGAGGACGATGATGATTTGGAAATGACTATGGTGAAAGATGTCAAACTTGGAGCTGAGGTCTTTAATACATACGGGCCATTGGGTAACGCAGCACTGCTTCACAGATACGGTTTTACAGAGCCTGATAATCCATATGACATTGTCAATATCGACTTGGAACTCATCCTCCGCTGGGGTTCCTCCTTCTCTGGCCAGCATCGTAGAGCAAGGGTATCCCTCTGGAAACGATTTCATTACTCTGGATGTGTCACCCACGACTATGAATATTTTGAGATTTCATTTCATGGACAACCCCAATTTGACATGTTGGTTTTATTGTACATAATGCTCTTACCCGACGAAGAATACTATAAATTGGATCTTGCTATTGCAACTGCTGGAGGAAGCTCCGATGAACCTATGCCTGTCGACATCATTTTTCCAGACAAAAGCCAACAATTGCGCTACAAAGCTGAAATGTTGACCGAGGAACTGTTGCTGACAAAATCTCTTTGTAATGCTCTTTCGTCCCTTGCAGATATGCGGGACAGCCTGTATGGTGCAAATTCATTAGAAGACGATATCAGAGCATTGGGCAGGTGTAGTTGCATAAGTGAGAAAAAGTTGTACCATTCTTTGGTGCTTCGTATCAGTGAGAGGAAGATCCTTCGGAAGCTTCAAATATATGCTGCTAATGCTAAAGAAGCCTCTTGGACGGACAAGTTGAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

502

Amino Acids

56.15

Weight (kDa)

4.89

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56570 AT3G56570
fragaria_vesca	FvH4_1g25860
malus_domestica	MD00G1030500.v1.1
prunus_persica	Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1
pyrus_communis	pycom520g01270
rosa_chinensis	RchiOBHm_Chr3g0485001
rosa_laevigata	RLG00000023178
rosa_multiflora	Rmu_sc0006040.1_g000023 Rmu_sc0008046.1_g000001 Rmu_sc0009462.1_g000004 Rmu_sc0013239.1_g000002 Rmu_sc0029923.1_g000001 Rmu_sc0034567.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397270
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh3AG265400 Rh3BG300900 Rh3BG301000 Rh3CG298800 Rh3CG299300 Rh3DG294700 Rh3DG295100
rosa_wichuraiana	Rw0G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1356
Acc36I	ACCTGC	1 cut(s)	1356
AccB7I	CCANNNNNTGG	2 cut(s)	415, 1405
AccI	GTMKAC	1 cut(s)	1197
AclWI	GGATC	2 cut(s)	1155, 1426
AcoI	YGGCCR	2 cut(s)	192, 979
AcsI	RAATTY	2 cut(s)	198, 1333
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	314, 353, 1109, 1397
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	6 cut(s)	355, 415, 559, 704, 961, 1405
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	4 cut(s)	64, 92, 1448, 1495
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	324, 354, 558
AloI	GAACNNNNNNTCC	2 cut(s)	939, 971
AluBI	AGCT	9 cut(s)	128, 208, 361, 442, 671, 842, 1176, 1241, 1444
AluI	AGCT	9 cut(s)	128, 208, 361, 442, 671, 842, 1176, 1241, 1444
AlwI	GGATC	2 cut(s)	1155, 1426
AlwNI	CAGNNNCTG	2 cut(s)	746, 911
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	4 cut(s)	192, 345, 863, 979
ApaI	GGGCCC	1 cut(s)	349
ApoI	RAATTY	2 cut(s)	198, 1333
AspLEI	GCGC	2 cut(s)	336, 1233
AspS9I	GGNCC	3 cut(s)	345, 346, 863
AsuHPI	GGTGA	4 cut(s)	64, 179, 832, 1030
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	2 cut(s)	349, 409
BalI	TGGCCA	2 cut(s)	194, 981
BanII	GRGCYC	2 cut(s)	349, 510
BbsI	GAAGAC	1 cut(s)	1350
BbvCI	CCTCAGC	2 cut(s)	672, 843
BccI	CCATC	3 cut(s)	63, 336, 605
BceAI	ACGGC	2 cut(s)	146, 376
BciT130I	CCWGG	3 cut(s)	326, 356, 560
BciVI	GTATCC	1 cut(s)	1012
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	1356
BfuI	GTATCC	1 cut(s)	1012
Bme1390I	CCNGG	3 cut(s)	326, 356, 560
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	345, 346, 863
BmiI	GGNNCC	5 cut(s)	323, 347, 348, 636, 967
BmrFI	CCNGG	3 cut(s)	326, 356, 560
BmsI	GCATC	2 cut(s)	754, 994
BpiI	GAAGAC	1 cut(s)	1350
BpmI	CTGGAG	3 cut(s)	377, 464, 1188
Bpu10I	CCTNAGC	2 cut(s)	672, 843
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	261, 325, 619, 1254
BsaXI	ACNNNNNCTCC	4 cut(s)	831, 861, 939, 969
Bsc4I	CCNNNNNNNGG	6 cut(s)	355, 415, 559, 704, 961, 1405
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	326, 356, 560
BseDI	CCNNGG	4 cut(s)	261, 325, 619, 1254
BseGI	GGATG	4 cut(s)	78, 682, 951, 1037
BseLI	CCNNNNNNNGG	6 cut(s)	355, 415, 559, 704, 961, 1405
BseMII	CTCAG	4 cut(s)	243, 663, 713, 834
BseRI	GAGGAG	5 cut(s)	293, 296, 334, 687, 791
BseSI	GKGCMC	2 cut(s)	349, 409
BseYI	CCCAGC	2 cut(s)	729, 960
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	4 cut(s)	194, 347, 865, 981
BsiEI	CGRYCG	1 cut(s)	599
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	4 cut(s)	131, 448, 1282, 1328
BslI	CCNNNNNNNGG	6 cut(s)	355, 415, 559, 704, 961, 1405
BsmFI	GGGAC	4 cut(s)	131, 448, 1282, 1328
BsnI	GGCC	4 cut(s)	194, 347, 865, 981
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	349, 409, 510
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	1147, 1431
Bsp19I	CCATGG	1 cut(s)	619
BspANI	GGCC	4 cut(s)	194, 347, 865, 981
BspCNI	CTCAG	4 cut(s)	244, 664, 712, 835
BspLI	GGNNCC	5 cut(s)	323, 347, 348, 636, 967
BspMI	ACCTGC	1 cut(s)	1356
BspPI	GGATC	2 cut(s)	1155, 1426
BspQI	GCTCTTC	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	1107
BssECI	CCNNGG	4 cut(s)	261, 325, 619, 1254
BssMI	GATC	2 cut(s)	1147, 1431
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	3 cut(s)	326, 356, 560
Bst4CI	ACNGT	3 cut(s)	457, 899, 1263
Bst6I	CTCTTC	3 cut(s)	174, 369, 491
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	1107
BstC8I	GCNNGC	5 cut(s)	47, 210, 214, 297, 983
BstDEI	CTNAG	5 cut(s)	252, 568, 672, 699, 843
BstDSI	CCRYGG	1 cut(s)	619
BstEII	GGTNACC	2 cut(s)	167, 614
BstF5I	GGATG	4 cut(s)	78, 682, 951, 1037
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	336, 1233
BstKTI	GATC	2 cut(s)	1150, 1434
BstMBI	GATC	2 cut(s)	1147, 1431
BstMCI	CGRYCG	1 cut(s)	599
BstNI	CCWGG	3 cut(s)	326, 356, 560
BstNSI	RCATGY	1 cut(s)	1096
BstPI	GGTNACC	2 cut(s)	167, 614
BstSCI	CCNGG	3 cut(s)	324, 354, 558
BstSLI	GKGCMC	2 cut(s)	349, 409
BstV2I	GAAGAC	1 cut(s)	1350
BstX2I	RGATCY	2 cut(s)	1147, 1431
BstYI	RGATCY	2 cut(s)	1147, 1431
Bsu36I	CCTNAGG	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	1012
BsuRI	GGCC	4 cut(s)	194, 347, 865, 981
BtgI	CCRYGG	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	4 cut(s)	78, 682, 951, 1037
BtsI	GCAGTG	2 cut(s)	494, 881
BtsIMutI	CAGTG	4 cut(s)	157, 494, 881, 1426
BveI	ACCTGC	1 cut(s)	1356
Cac8I	GCNNGC	5 cut(s)	47, 210, 214, 297, 983
CaiI	CAGNNNCTG	2 cut(s)	746, 911
CfoI	GCGC	2 cut(s)	336, 1233
Cfr13I	GGNCC	3 cut(s)	345, 346, 863
CseI	GACGC	2 cut(s)	110, 410
Csp6I	GTAC	4 cut(s)	313, 352, 1108, 1396
CviAII	CATG	4 cut(s)	520, 620, 1073, 1093
CviQI	GTAC	4 cut(s)	313, 352, 1108, 1396
DdeI	CTNAG	5 cut(s)	252, 568, 672, 699, 843
DpnI	GATC	2 cut(s)	1149, 1433
DpnII	GATC	2 cut(s)	1147, 1431
EaeI	YGGCCR	2 cut(s)	192, 979
Eam1104I	CTCTTC	3 cut(s)	174, 369, 491
EarI	CTCTTC	3 cut(s)	174, 369, 491
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	619
Eco24I	GRGCYC	2 cut(s)	349, 510
Eco32I	GATATC	1 cut(s)	1351
Eco47III	AGCGCT	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	252
Eco91I	GGTNACC	2 cut(s)	167, 614
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	2 cut(s)	167, 614
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	3 cut(s)	324, 354, 558
EcoRV	GATATC	1 cut(s)	1351
EcoT14I	CCWWGG	1 cut(s)	619
EcoT38I	GRGCYC	2 cut(s)	349, 510
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	4 cut(s)	523, 623, 1076, 1096
FaqI	GGGAC	4 cut(s)	131, 448, 1282, 1328
FatI	CATG	4 cut(s)	519, 619, 1072, 1092
FauI	CCCGC	3 cut(s)	42, 108, 1305
FauNDI	CATATG	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	1197
FokI	GGATG	4 cut(s)	85, 689, 938, 1044
FriOI	GRGCYC	2 cut(s)	349, 510
GlaI	GCGC	2 cut(s)	335, 1232
GsaI	CCCAGC	2 cut(s)	733, 964
GsuI	CTGGAG	3 cut(s)	377, 464, 1188
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	194, 347, 865, 981
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	2 cut(s)	110, 410
HhaI	GCGC	2 cut(s)	336, 1233
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	523, 623, 1076, 1096
Hin6I	GCGC	2 cut(s)	334, 1231
HinP1I	GCGC	2 cut(s)	334, 1231
HincII	GTYRAC	2 cut(s)	1198, 1251
HindII	GTYRAC	2 cut(s)	1198, 1251
HindIII	AAGCTT	1 cut(s)	1442
HinfI	GANTC	4 cut(s)	147, 624, 716, 743
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	4 cut(s)	64, 179, 832, 1030
Hpy166II	GTNNAC	3 cut(s)	682, 1198, 1251
Hpy188III	TCNNGA	4 cut(s)	339, 1009, 1029, 1211
Hpy8I	GTNNAC	3 cut(s)	682, 1198, 1251
Hpy99I	CGWCG	5 cut(s)	104, 125, 167, 457, 1130
HpyAV	CCTTC	4 cut(s)	77, 768, 982, 1445
HpyCH4III	ACNGT	3 cut(s)	457, 899, 1263
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	430, 1160, 1304, 1331, 1377
HpyF3I	CTNAG	5 cut(s)	252, 568, 672, 699, 843
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	523, 623, 1076, 1096
HspAI	GCGC	2 cut(s)	334, 1231
Kzo9I	GATC	2 cut(s)	1147, 1431
LguI	GCTCTTC	1 cut(s)	491
LweI	GCATC	2 cut(s)	754, 994
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	4 cut(s)	167, 614, 872, 1036
MalI	GATC	2 cut(s)	1149, 1433
MboI	GATC	2 cut(s)	1147, 1431
MboII	GAAGA	9 cut(s)	191, 383, 386, 505, 508, 582, 1142, 1355, 1441
MfeI	CAATTG	1 cut(s)	1226
MflI	RGATCY	2 cut(s)	1147, 1431
MhlI	GDGCHC	3 cut(s)	349, 409, 510
MlsI	TGGCCA	2 cut(s)	194, 981
MluCI	AATT	9 cut(s)	198, 529, 535, 544, 554, 1085, 1142, 1226, 1333
MluNI	TGGCCA	2 cut(s)	194, 981
MlyI	GAGTC	1 cut(s)	710
Mox20I	TGGCCA	2 cut(s)	194, 981
MscI	TGGCCA	2 cut(s)	194, 981
MseI	TTAA	3 cut(s)	528, 654, 852
MslI	CAYNNNNRTG	1 cut(s)	1047
Msp20I	TGGCCA	2 cut(s)	194, 981
MspA1I	CMGCKG	4 cut(s)	39, 239, 671, 960
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	326, 356, 560
MunI	CAATTG	1 cut(s)	1226
MvaI	CCWGG	3 cut(s)	326, 356, 560
NcoI	CCATGG	1 cut(s)	619
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	2 cut(s)	1147, 1431
NlaIII	CATG	4 cut(s)	523, 623, 1076, 1096
NlaIV	GGNNCC	5 cut(s)	323, 347, 348, 636, 967
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	167, 1036
NspI	RCATGY	1 cut(s)	1096
PaqCI	CACCTGC	1 cut(s)	1356
PciI	ACATGT	1 cut(s)	1092
PciSI	GCTCTTC	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	147, 624, 743
PflFI	GACNNNGTC	1 cut(s)	929
PflMI	CCANNNNNTGG	2 cut(s)	415, 1405
PfoI	TCCNGGA	1 cut(s)	558
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
PscI	ACATGT	1 cut(s)	1092
Psp6I	CCWGG	3 cut(s)	324, 354, 558
PspEI	GGTNACC	2 cut(s)	167, 614
PspFI	CCCAGC	2 cut(s)	729, 960
PspGI	CCWGG	3 cut(s)	324, 354, 558
PspN4I	GGNNCC	5 cut(s)	323, 347, 348, 636, 967
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	345, 346, 863
PstNI	CAGNNNCTG	2 cut(s)	746, 911
PsuI	RGATCY	2 cut(s)	1147, 1431
PsyI	GACNNNGTC	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	4 cut(s)	314, 353, 1109, 1397
RsaNI	GTAC	4 cut(s)	313, 352, 1108, 1396
RseI	CAYNNNNRTG	1 cut(s)	1047
SalI	GTCGAC	1 cut(s)	1196
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	3 cut(s)	528, 654, 852
Sau3AI	GATC	2 cut(s)	1147, 1431
Sau96I	GGNCC	3 cut(s)	345, 346, 863
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	3 cut(s)	326, 356, 560
SduI	GDGCHC	3 cut(s)	349, 409, 510
SfaNI	GCATC	2 cut(s)	754, 994
SmiMI	CAYNNNNRTG	1 cut(s)	1047
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	9 cut(s)	198, 529, 535, 544, 554, 1085, 1142, 1226, 1333
SspI	AATATT	1 cut(s)	1055
StyD4I	CCNGG	3 cut(s)	324, 354, 558
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	3 cut(s)	457, 899, 1263
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	108, 939, 1197
TaqII	GACCGA	2 cut(s)	585, 1268
TasI	AATT	9 cut(s)	198, 529, 535, 544, 554, 1085, 1142, 1226, 1333
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	7 cut(s)	24, 42, 236, 239, 383, 386, 452
TfiI	GAWTC	3 cut(s)	147, 624, 743
Tru1I	TTAA	3 cut(s)	528, 654, 852
Tru9I	TTAA	3 cut(s)	528, 654, 852
TscAI	CASTG	4 cut(s)	157, 494, 888, 1426
TseFI	GTSAC	2 cut(s)	167, 1036
Tsp45I	GTSAC	2 cut(s)	167, 1036
TspDTI	ATGAA	9 cut(s)	89, 537, 574, 1010, 1056, 1061, 1065, 1197, 1326
TspGWI	ACGGA	3 cut(s)	138, 452, 1499
TspRI	CASTG	4 cut(s)	157, 494, 888, 1426
Tth111I	GACNNNGTC	1 cut(s)	929
Van91I	CCANNNNNTGG	2 cut(s)	415, 1405
XapI	RAATTY	2 cut(s)	198, 1333
XceI	RCATGY	1 cut(s)	1096
XmiI	GTMKAC	1 cut(s)	1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.