RCHIOBHM_MTG0499211

ATP synthase protein YMF19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0015812
Physical Location & Seq
Reverse (-)
288948 .. 289802
855 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGATTCCTTGGGATCAGCAGAATTCTAAAACTACGGAACCGACTGGTTTCACAGCGGGGGAACAACACCCGGAGCAACGACCCCAACAGTTTGGAAGAGATTTTGAGAAAAGGTTTTAGTACCGGTGTATCCTATATGTACTCTAGTTTATTCGAAGTGGCAAAATGGTGTAACGTCGTCGACTTATTGGGAAAAGGGAATAAAATGCGCTGGGACTACTCCAGTTTATTTGAAGTCGCAAAATGGTGTAACGCCATTTTCCGGCGCTTTATATTCCTTTCTTTCCTCGCAAAGGGGCTGTGTGCCCTTTTCTCGACTTTTTTTTGCCTTCTTTTGTCGCCGGAATGGAGCGGGTGGGAACTCATTCCGGCGGCCGTGCACCCACTTCTCTATCTTTCAATCGGCCCGGGATTGGGTCCGGACGCCCCCCCAGCGCCGGTCCCGGCGGTTATTCCCGATTTGAACGGGGCTCCGCCGCCGCTCATTCCGGATCTCAATGCCCCGGATCAGGCGGGGCTTGCGGAAGAGATAGAGGCAACCTGGGCGGCGCTCAGAGACACCCAGGAAGCGTTGGAGCGCCAGGAGGCGGAACTGAGCGCTTTCGAAGCTCAGCTCAATCATGAACGGCAACAAAGCGCAAAAATGGAACGTGAGTTCCGGGCTCTCACGGCCCGGATCGAATGGCAAGAGGAAAGGCAAGCTTTGTTGCTGCAGCAGCTAGCTCAGGCTAGTGGGGGCGCGCTTAGCGAAAGTCCTTAG

Protein Analysis

284

Amino Acids

31.96

Weight (kDa)

5.05

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YMF19 PF02326 2 - 82 6.2e-23 Plant ATP synthase F0
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 447, 577
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 836
AccIII TCCGGA 2 cut(s) 514, 583
AclWI GGATC 4 cut(s) 116, 594, 609, 779
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 17, 117
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 2 cut(s) 217, 236
AfeI AGCGCT 1 cut(s) 694
AfiI CCNNNNNNNGG 7 cut(s) 357, 388, 508, 509, 532, 604, 682
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 3 cut(s) 329, 495, 559
AjnI CCWGG 3 cut(s) 635, 657, 675
AloI GAACNNNNNNTCC 4 cut(s) 734, 735, 766, 767
AluBI AGCT 5 cut(s) 704, 709, 797, 814, 818
AluI AGCT 5 cut(s) 704, 709, 797, 814, 818
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 645
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 4 cut(s) 116, 594, 609, 779
Ama87I CYCGRG 1 cut(s) 502
Aor13HI TCCGGA 2 cut(s) 514, 583
Aor51HI AGCGCT 1 cut(s) 694
AoxI GGCC 3 cut(s) 468, 499, 765
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 3 cut(s) 805, 808, 811
ApoI RAATTY 2 cut(s) 17, 117
AsiGI ACCGGT 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 459
AspLEI GCGC 9 cut(s) 306, 363, 532, 646, 675, 695, 734, 836, 838
AspS9I GGNCC 4 cut(s) 500, 512, 535, 766
AsuC2I CCSGG 7 cut(s) 166, 503, 504, 539, 599, 755, 769
AsuII TTCGAA 2 cut(s) 249, 699
AsuNHI GCTAGC 1 cut(s) 814
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 2 cut(s) 512, 535
BaeGI GKGCMC 2 cut(s) 403, 477
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BanII GRGCYC 2 cut(s) 568, 760
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 3 cut(s) 792, 820, 823
BccI CCATC 2 cut(s) 83, 89
BceAI ACGGC 3 cut(s) 455, 737, 780
BciT130I CCWGG 3 cut(s) 637, 659, 677
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 7 cut(s) 166, 503, 504, 539, 599, 755, 769
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 3 cut(s) 240, 815, 825
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 5 cut(s) 364, 533, 647, 676, 696
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 7 cut(s) 468, 572, 575, 642, 806, 809, 812
BlpI GCTNAGC 2 cut(s) 705, 839
BlsI GCNGC 7 cut(s) 469, 573, 576, 643, 807, 810, 813
Bme18I GGWCC 2 cut(s) 512, 535
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 4 cut(s) 500, 512, 535, 766
BmiI GGNNCC 4 cut(s) 134, 513, 537, 567
BmtI GCTAGC 1 cut(s) 818
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 2 cut(s) 705, 839
Bpu14I TTCGAA 2 cut(s) 249, 699
BpuMI CCSGG 7 cut(s) 166, 503, 504, 539, 599, 755, 769
BsaHI GRCGYC 1 cut(s) 519
BsaJI CCNNGG 5 cut(s) 103, 502, 597, 636, 657
BsaWI WCCGGW 3 cut(s) 218, 514, 583
Bsc4I CCNNNNNNNGG 7 cut(s) 357, 388, 508, 509, 532, 604, 682
Bse118I RCCGGY 2 cut(s) 218, 532
Bse1I ACTGG 3 cut(s) 15, 144, 318
Bse3DI GCAATG 1 cut(s) 91
BseAI TCCGGA 2 cut(s) 514, 583
BseBI CCWGG 3 cut(s) 637, 659, 677
BseDI CCNNGG 5 cut(s) 103, 502, 597, 636, 657
BseLI CCNNNNNNNGG 7 cut(s) 357, 388, 508, 509, 532, 604, 682
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 4 cut(s) 661, 680, 719, 833
BseNI ACTGG 3 cut(s) 15, 144, 318
BsePI GCGCGC 1 cut(s) 834
BseSI GKGCMC 2 cut(s) 403, 477
BseX3I CGGCCG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 792, 820, 823
BseYI CCCAGC 2 cut(s) 306, 526
Bsh1236I CGCG 1 cut(s) 836
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 3 cut(s) 470, 501, 767
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 502
BslFI GGGAC 2 cut(s) 323, 521
BslI CCNNNNNNNGG 7 cut(s) 357, 388, 508, 509, 532, 604, 682
BsmAI GTCTC 1 cut(s) 645
BsmFI GGGAC 2 cut(s) 323, 521
BsnI GGCC 3 cut(s) 470, 501, 767
BsoBI CYCGRG 1 cut(s) 502
Bsp119I TTCGAA 2 cut(s) 249, 699
Bsp1286I GDGCHC 4 cut(s) 403, 477, 568, 760
Bsp13I TCCGGA 2 cut(s) 514, 583
Bsp143I GATC 4 cut(s) 108, 586, 601, 771
Bsp1720I GCTNAGC 2 cut(s) 705, 839
BspANI GGCC 3 cut(s) 470, 501, 767
BspCNI CTCAG 4 cut(s) 660, 681, 718, 832
BspEI TCCGGA 2 cut(s) 514, 583
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 4 cut(s) 134, 513, 537, 567
BspMAI CTGCAG 1 cut(s) 810
BspOI GCTAGC 1 cut(s) 818
BspPI GGATC 4 cut(s) 116, 594, 609, 779
BspT104I TTCGAA 2 cut(s) 249, 699
BsrBI CCGCTC 2 cut(s) 447, 577
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 2 cut(s) 218, 532
BsrI ACTGG 3 cut(s) 15, 144, 318
BssAI RCCGGY 2 cut(s) 218, 532
BssECI CCNNGG 5 cut(s) 103, 502, 597, 636, 657
BssHII GCGCGC 1 cut(s) 834
BssMI GATC 4 cut(s) 108, 586, 601, 771
BssNI GRCGYC 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 637, 659, 677
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 186, 615
BstACI GRCGYC 1 cut(s) 519
BstBI TTCGAA 2 cut(s) 249, 699
BstC8I GCNNGC 4 cut(s) 615, 795, 816, 836
BstDEI CTNAG 6 cut(s) 647, 689, 705, 819, 839, 852
BstENI CCTNNNNNAGG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 836
BstH2I RGCGCY 5 cut(s) 364, 533, 647, 676, 696
BstHHI GCGC 9 cut(s) 306, 363, 532, 646, 675, 695, 734, 836, 838
BstKTI GATC 4 cut(s) 111, 589, 604, 774
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 4 cut(s) 108, 586, 601, 771
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 7 cut(s) 527, 614, 638, 701, 764, 811, 840
BstNI CCWGG 3 cut(s) 637, 659, 677
BstSFI CTRYAG 1 cut(s) 806
BstSLI GKGCMC 2 cut(s) 403, 477
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 3 cut(s) 792, 820, 823
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 586
BstZI CGGCCG 1 cut(s) 468
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 3 cut(s) 470, 501, 767
Cac8I GCNNGC 4 cut(s) 615, 795, 816, 836
CciI TCATGA 1 cut(s) 715
CfoI GCGC 9 cut(s) 306, 363, 532, 646, 675, 695, 734, 836, 838
Cfr10I RCCGGY 2 cut(s) 218, 532
Cfr13I GGNCC 4 cut(s) 500, 512, 535, 766
Cfr9I CCCGGG 1 cut(s) 502
CseI GACGC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 216, 235
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 2 cut(s) 48, 716
CviQI GTAC 2 cut(s) 216, 235
DdeI CTNAG 6 cut(s) 647, 689, 705, 819, 839, 852
DpnI GATC 4 cut(s) 110, 588, 603, 773
DpnII GATC 4 cut(s) 108, 586, 601, 771
EaeI YGGCCR 1 cut(s) 468
EagI CGGCCG 1 cut(s) 468
Eam1104I CTCTTC 2 cut(s) 186, 615
EarI CTCTTC 2 cut(s) 186, 615
EciI GGCGGA 2 cut(s) 558, 698
EclXI CGGCCG 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 568, 760
Eco47I GGWCC 2 cut(s) 512, 535
Eco47III AGCGCT 1 cut(s) 694
Eco52I CGGCCG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 635, 657, 675
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 568, 760
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 51, 719
FaiI YATR 8 cut(s) 49, 72, 80, 82, 231, 233, 368, 717
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 2 cut(s) 323, 521
FatI CATG 2 cut(s) 47, 715
FauI CCCGC 3 cut(s) 144, 440, 601
FauNDI CATATG 1 cut(s) 80
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 7 cut(s) 468, 572, 575, 642, 806, 809, 812
FriOI GRGCYC 2 cut(s) 568, 760
Fsp4HI GCNGC 7 cut(s) 468, 572, 575, 642, 806, 809, 812
FspBI CTAG 3 cut(s) 240, 815, 825
GlaI GCGC 9 cut(s) 305, 362, 531, 645, 674, 694, 733, 835, 837
GluI GCNGC 7 cut(s) 468, 572, 575, 642, 806, 809, 812
GsaI CCCAGC 2 cut(s) 310, 530
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 5 cut(s) 364, 533, 647, 676, 696
HaeIII GGCC 3 cut(s) 470, 501, 767
HgaI GACGC 1 cut(s) 527
HhaI GCGC 9 cut(s) 306, 363, 532, 646, 675, 695, 734, 836, 838
Hin1I GRCGYC 1 cut(s) 519
Hin1II CATG 2 cut(s) 51, 719
Hin6I GCGC 9 cut(s) 304, 361, 530, 644, 673, 693, 732, 834, 836
HinP1I GCGC 9 cut(s) 304, 361, 530, 644, 673, 693, 732, 834, 836
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 277, 475
Hpy188I TCNGA 1 cut(s) 650
Hpy188III TCNNGA 5 cut(s) 409, 515, 551, 584, 716
Hpy8I GTNNAC 2 cut(s) 277, 475
Hpy99I CGWCG 2 cut(s) 275, 278
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 2 cut(s) 270, 745
HpyCH4V TGCA 3 cut(s) 84, 475, 808
HpyF10VI GCNNNNNNNGC 7 cut(s) 527, 614, 638, 701, 764, 811, 840
HpyF3I CTNAG 6 cut(s) 647, 689, 705, 819, 839, 852
HpySE526I ACGT 2 cut(s) 270, 745
Hsp92I GRCGYC 1 cut(s) 519
Hsp92II CATG 2 cut(s) 51, 719
HspAI GCGC 9 cut(s) 304, 361, 530, 644, 673, 693, 732, 834, 836
Kpn2I TCCGGA 2 cut(s) 514, 583
Kzo9I GATC 4 cut(s) 108, 586, 601, 771
LmnI GCTCC 4 cut(s) 168, 444, 571, 670
Lsp1109I GCAGC 3 cut(s) 792, 820, 823
MaeI CTAG 3 cut(s) 240, 815, 825
MaeII ACGT 2 cut(s) 270, 745
MaeIII GTNAC 2 cut(s) 266, 344
MalI GATC 4 cut(s) 110, 588, 603, 773
MbiI CCGCTC 2 cut(s) 447, 577
MboI GATC 4 cut(s) 108, 586, 601, 771
MboII GAAGA 3 cut(s) 31, 203, 632
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 4 cut(s) 403, 477, 568, 760
MluCI AATT 3 cut(s) 17, 35, 117
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 6 cut(s) 15, 68, 392, 622, 673, 778
MroI TCCGGA 2 cut(s) 514, 583
MroXI GAANNNNTTC 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 151
MvaI CCWGG 3 cut(s) 637, 659, 677
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 7 cut(s) 527, 614, 638, 701, 764, 811, 840
NciI CCSGG 7 cut(s) 166, 503, 504, 539, 599, 755, 769
NdeI CATATG 1 cut(s) 80
NdeII GATC 4 cut(s) 108, 586, 601, 771
NheI GCTAGC 1 cut(s) 814
NlaIII CATG 2 cut(s) 51, 719
NlaIV GGNNCC 4 cut(s) 134, 513, 537, 567
NspV TTCGAA 2 cut(s) 249, 699
PagI TCATGA 1 cut(s) 715
PauI GCGCGC 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 7 cut(s) 469, 573, 576, 643, 807, 810, 813
Psp6I CCWGG 3 cut(s) 635, 657, 675
PspFI CCCAGC 2 cut(s) 306, 526
PspGI CCWGG 3 cut(s) 635, 657, 675
PspN4I GGNNCC 4 cut(s) 134, 513, 537, 567
PspPI GGNCC 4 cut(s) 500, 512, 535, 766
PstI CTGCAG 1 cut(s) 810
PsuI RGATCY 1 cut(s) 586
PteI GCGCGC 1 cut(s) 834
RsaI GTAC 2 cut(s) 217, 236
RsaNI GTAC 2 cut(s) 216, 235
SalI GTCGAC 1 cut(s) 275
SatI GCNGC 7 cut(s) 468, 572, 575, 642, 806, 809, 812
Sau3AI GATC 4 cut(s) 108, 586, 601, 771
Sau96I GGNCC 4 cut(s) 500, 512, 535, 766
SduI GDGCHC 4 cut(s) 403, 477, 568, 760
SetI ASST 9 cut(s) 211, 273, 638, 706, 711, 748, 799, 816, 820
SfcI CTRYAG 1 cut(s) 806
SfuI TTCGAA 2 cut(s) 249, 699
SinI GGWCC 2 cut(s) 512, 535
SmaI CCCGGG 1 cut(s) 504
Sse9I AATT 3 cut(s) 17, 35, 117
SspMI CTAG 3 cut(s) 240, 815, 825
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 2 cut(s) 273, 748
TaqI TCGA 5 cut(s) 249, 276, 410, 699, 774
TasI AATT 3 cut(s) 17, 35, 117
TatI WGTACW 1 cut(s) 234
TauI GCSGC 4 cut(s) 470, 574, 577, 644
TfiI GAWTC 1 cut(s) 99
TseI GCWGC 3 cut(s) 805, 808, 811
TspDTI ATGAA 1 cut(s) 732
TspGWI ACGGA 1 cut(s) 145
TspMI CCCGGG 1 cut(s) 502
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 512, 535
XagI CCTNNNNNAGG 1 cut(s) 386
XapI RAATTY 2 cut(s) 17, 117
XmaI CCCGGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 3 cut(s) 240, 815, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.