RchiOBHm_Chr7g0242001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007809
Physical Location & Seq
Forward (+)
68073756 .. 68074750
995 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGTCACCCTCACTCATTTATGATTACCGTCGCATCCAGCAATATTATATTCCCATATTTCGATCCATAAATCCATACAATGAGATCGACATCTACTTTATTAATAATAATGTTGTACGCATATCTCTCCATCTCTCAATCAGTGAATTAATCAAAACTAGTTTCAGATCGATCGGAGCTAGCTACCGGCAAGAACATAGATCCATCGAAATTCAAGCATCAATGGAAGGGGTCTCTATAAGCATGTACAAAGGTCTGAGAGGATACTGGCGAAGGAGAGGCTACCAAAAGCTAAGAGGGTCGGGCCGACGCCACAAGAACCGGATGGAGCTGCGTTCACCCCGTAAAAGGCGCGTGTGGCGGATCAAAATGGCTCCCAAGCTGAAGCTGAGTTTCCTCAGAAAAATCCCTTCACCTAAGAAGTTTTTGGTTTGGCTTCGAGACGCCTATGTCAAACTCATGCTGGGATTCGCCAACTCGCGGGTGTTCACTACCGCCTACGGTGGTTCCGTATGTCATGGTGCTACTGGTTCATTCGGAAAAGGCCCCCTTAAGGAGTATGATGAGAAGATGATCATCGAGATCTACAAATCCTTGATGCTGGCGCAAGGTCAGTTGGTGCCCCGCGACGCACCTAAACCAGGCTCAGAAATTATTTACCGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

26.04

Weight (kDa)

10.5

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 619
AccII CGCG 3 cut(s) 354, 481, 627
AciI CCGC 5 cut(s) 361, 481, 495, 625, 661
AclWI GGATC 3 cut(s) 57, 195, 371
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 2 cut(s) 310, 444
AfaI GTAC 2 cut(s) 117, 248
AfiI CCNNNNNNNGG 4 cut(s) 348, 480, 553, 641
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 1 cut(s) 215
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 6 cut(s) 179, 183, 292, 331, 382, 388
AluI AGCT 6 cut(s) 179, 183, 292, 331, 382, 388
Alw26I GTCTC 2 cut(s) 238, 435
AlwI GGATC 3 cut(s) 57, 195, 371
AoxI GGCC 2 cut(s) 304, 544
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 210
AseI ATTAAT 2 cut(s) 102, 149
AspLEI GCGC 2 cut(s) 354, 607
AspS9I GGNCC 2 cut(s) 304, 545
AsuHPI GGTGA 2 cut(s) 330, 405
AsuNHI GCTAGC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 624
BanI GGYRCC 1 cut(s) 619
BbvI GCAGC 1 cut(s) 318
BccI CCATC 3 cut(s) 138, 212, 319
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 238, 435
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 159, 180
BfrI CTTAAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 257
BglII AGATCT 1 cut(s) 582
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 304, 545
BmiI GGNNCC 4 cut(s) 375, 508, 547, 621
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 3 cut(s) 42, 227, 588
BmtI GCTAGC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 170
BsaBI GATNNNNATC 2 cut(s) 89, 575
BsaHI GRCGYC 2 cut(s) 310, 444
BsaI GGTCTC 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 480, 553, 641
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 272, 532, 664
Bse8I GATNNNNATC 2 cut(s) 89, 575
BseBI CCWGG 1 cut(s) 642
BseCI ATCGAT 1 cut(s) 170
BseGI GGATG 2 cut(s) 33, 330
BseJI GATNNNNATC 2 cut(s) 89, 575
BseLI CCNNNNNNNGG 4 cut(s) 348, 480, 553, 641
BseMII CTCAG 4 cut(s) 248, 380, 412, 660
BseNI ACTGG 3 cut(s) 272, 532, 664
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 463
Bsh1236I CGCG 3 cut(s) 354, 481, 627
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 306, 546
BshNI GGYRCC 1 cut(s) 619
BshVI ATCGAT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 2 cut(s) 187, 322
BslI CCNNNNNNNGG 4 cut(s) 348, 480, 553, 641
BsmAI GTCTC 2 cut(s) 238, 435
BsmBI CGTCTC 1 cut(s) 435
BsnI GGCC 2 cut(s) 306, 546
Bso31I GGTCTC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 624
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
BspACI CCGC 5 cut(s) 361, 481, 495, 625, 661
BspANI GGCC 2 cut(s) 306, 546
BspCNI CTCAG 4 cut(s) 249, 381, 411, 659
BspDI ATCGAT 1 cut(s) 170
BspFNI CGCG 3 cut(s) 354, 481, 627
BspLI GGNNCC 4 cut(s) 375, 508, 547, 621
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 3 cut(s) 57, 195, 371
BspT107I GGYRCC 1 cut(s) 619
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 3 cut(s) 272, 532, 664
BssAI RCCGGY 1 cut(s) 186
BssMI GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
BssNI GRCGYC 2 cut(s) 310, 444
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 29, 503
BstACI GRCGYC 2 cut(s) 310, 444
BstAFI CTTAAG 1 cut(s) 551
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 181, 603
BstDEI CTNAG 6 cut(s) 257, 293, 389, 398, 417, 646
BstENI CCTNNNNNAGG 1 cut(s) 639
BstF5I GGATG 2 cut(s) 33, 330
BstFNI CGCG 3 cut(s) 354, 481, 627
BstHHI GCGC 2 cut(s) 354, 607
BstKTI GATC 8 cut(s) 65, 87, 170, 174, 203, 366, 576, 585
BstMAI GTCTC 2 cut(s) 238, 435
BstMBI GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 3 cut(s) 354, 481, 627
BstV1I GCAGC 1 cut(s) 318
BstX2I RGATCY 2 cut(s) 200, 582
BstYI RGATCY 2 cut(s) 200, 582
Bsu15I ATCGAT 1 cut(s) 170
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 306, 546
BsuTUI ATCGAT 1 cut(s) 170
BtsCI GGATG 2 cut(s) 33, 330
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 181, 603
CfoI GCGC 2 cut(s) 354, 607
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 304, 545
ClaI ATCGAT 1 cut(s) 170
CseI GACGC 3 cut(s) 318, 452, 638
Csp6I GTAC 2 cut(s) 116, 247
CviAII CATG 3 cut(s) 244, 460, 518
CviQI GTAC 2 cut(s) 116, 247
DdeI CTNAG 6 cut(s) 257, 293, 389, 398, 417, 646
DpnI GATC 8 cut(s) 64, 86, 169, 173, 202, 365, 575, 584
DpnII GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EciI GGCGGA 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 404
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 640
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 3 cut(s) 247, 463, 521
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 3 cut(s) 243, 459, 517
FauI CCCGC 2 cut(s) 474, 632
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 2 cut(s) 20, 337
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 159, 180
GlaI GCGC 2 cut(s) 353, 606
GluI GCNGC 1 cut(s) 332
GsaI CCCAGC 1 cut(s) 467
HaeIII GGCC 2 cut(s) 306, 546
HapII CCGG 2 cut(s) 187, 322
HgaI GACGC 3 cut(s) 318, 452, 638
HhaI GCGC 2 cut(s) 354, 607
Hin1I GRCGYC 2 cut(s) 310, 444
Hin1II CATG 3 cut(s) 247, 463, 521
Hin6I GCGC 2 cut(s) 352, 605
HinP1I GCGC 2 cut(s) 352, 605
HinfI GANTC 1 cut(s) 468
HpaII CCGG 2 cut(s) 187, 322
HphI GGTGA 2 cut(s) 330, 405
Hpy166II GTNNAC 2 cut(s) 338, 489
Hpy188I TCNGA 6 cut(s) 167, 176, 258, 401, 539, 649
Hpy188III TCNNGA 2 cut(s) 440, 580
Hpy8I GTNNAC 2 cut(s) 338, 489
Hpy99I CGWCG 3 cut(s) 33, 312, 632
HpyAV CCTTC 3 cut(s) 221, 267, 420
HpyCH4III ACNGT 2 cut(s) 29, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 6 cut(s) 257, 293, 389, 398, 417, 646
Hsp92I GRCGYC 2 cut(s) 310, 444
Hsp92II CATG 3 cut(s) 247, 463, 521
HspAI GCGC 2 cut(s) 352, 605
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
LmnI GCTCC 3 cut(s) 176, 328, 379
LpnPI CCDG 9 cut(s) 50, 200, 253, 335, 449, 513, 587, 627, 654
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 3 cut(s) 42, 227, 588
MaeI CTAG 2 cut(s) 159, 180
MaeIII GTNAC 1 cut(s) 3
MalI GATC 8 cut(s) 64, 86, 169, 173, 202, 365, 575, 584
MboI GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
MboII GAAGA 1 cut(s) 580
MflI RGATCY 2 cut(s) 200, 582
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 3 cut(s) 146, 210, 651
MnlI CCTC 5 cut(s) 19, 254, 272, 290, 407
MseI TTAA 3 cut(s) 102, 149, 552
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 187, 322
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 3 cut(s) 354, 481, 627
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 247, 463, 521
NlaIV GGNNCC 4 cut(s) 375, 508, 547, 621
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 1 cut(s) 333
Ple19I CGATCG 1 cut(s) 174
PshBI ATTAAT 2 cut(s) 102, 149
Psp6I CCWGG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 4 cut(s) 375, 508, 547, 621
PspPI GGNCC 2 cut(s) 304, 545
PsuI RGATCY 2 cut(s) 200, 582
PvuI CGATCG 1 cut(s) 174
RsaI GTAC 2 cut(s) 117, 248
RsaNI GTAC 2 cut(s) 116, 247
SaqAI TTAA 3 cut(s) 102, 149, 552
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 8 cut(s) 62, 84, 167, 171, 200, 363, 573, 582
Sau96I GGNCC 2 cut(s) 304, 545
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 3 cut(s) 42, 227, 588
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 3 cut(s) 146, 210, 651
SsiI CCGC 5 cut(s) 361, 481, 495, 625, 661
SspI AATATT 1 cut(s) 44
SspMI CTAG 2 cut(s) 159, 180
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 29, 503
TaqI TCGA 6 cut(s) 61, 87, 170, 207, 439, 579
TasI AATT 3 cut(s) 146, 210, 651
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 3 cut(s) 102, 149, 552
Tru9I TTAA 3 cut(s) 102, 149, 552
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 551
VspI ATTAAT 2 cut(s) 102, 149
XagI CCTNNNNNAGG 1 cut(s) 639
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 247
XspI CTAG 2 cut(s) 159, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.