RchiOBHm_Chr6g0251071

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011600
Physical Location & Seq
Reverse (-)
6403991 .. 6404504
514 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGCCAACGGAGAAAAGTTGTTCGGTGCCACAGAGGTTTGGGATGCTCAGGATGGCAATCGTGGTGGATGCTACAGTCGCTTTTAGGCTTGAGATTGAAAGGAGGATTCCTTTTCGGCTGGAAATGGTTTCACTTGATGATCTCCTTATACCATCAATCCAAGCAGGCGGTTCATTATATGATAAGAAAATGAAGATTGTGGAATCTGAAGGCACTGGTTCTCCGAGTCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACAAATATTTAGCGGAAAATGCTCCTGAGCCTTACCCGAGCTTACAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGTGGGCGGTATATATTTGAAGGTTCATTCATTGCTAACTGAACAAGAATGCAAGAAGCTTAGCGGGTTCATAGACTGCAAAAAGCTCTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

8.39

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 2 - 156 2.6e-36 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 4 cut(s) 168, 275, 381, 438
AcuI CTGAAG 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 98, 244, 329, 394
AluBI AGCT 3 cut(s) 303, 433, 460
AluI AGCT 3 cut(s) 303, 433, 460
Ama87I CYCGRG 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 298
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 348
BccI CCATC 3 cut(s) 46, 160, 356
BceAI ACGGC 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 2 cut(s) 33, 58
Bpu10I CCTNAGC 2 cut(s) 47, 288
Bpu1102I GCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 2 cut(s) 56, 329
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 315, 404
Bse8I GATNNNNATC 2 cut(s) 56, 329
BseCI ATCGAT 1 cut(s) 357
BseGI GGATG 3 cut(s) 48, 57, 73
BseJI GATNNNNATC 2 cut(s) 56, 329
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 2 cut(s) 315, 404
BseMII CTCAG 2 cut(s) 61, 279
BseNI ACTGG 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 230
BsmI GAATGC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 298
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 434
BspACI CCGC 4 cut(s) 168, 275, 381, 438
BspCNI CTCAG 2 cut(s) 60, 280
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 315, 404
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 47, 288, 434
BstF5I GGATG 3 cut(s) 48, 57, 73
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 77, 281
BstSFI CTRYAG 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 3 cut(s) 48, 57, 73
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 357
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 1 cut(s) 230
CviJI RGCY 8 cut(s) 88, 118, 256, 292, 303, 367, 433, 460
CviKI_1 RGCY 8 cut(s) 88, 118, 256, 292, 303, 367, 433, 460
DdeI CTNAG 3 cut(s) 47, 288, 434
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 298
FaeI CATG 1 cut(s) 233
FaiI YATR 9 cut(s) 149, 178, 180, 231, 323, 345, 386, 388, 446
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 431
FokI GGATG 3 cut(s) 55, 64, 80
Hin1II CATG 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 106, 203, 226
Hpy188I TCNGA 2 cut(s) 208, 225
Hpy188III TCNNGA 2 cut(s) 49, 287
HpyAV CCTTC 2 cut(s) 203, 388
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 426, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 281
HpyF3I CTNAG 3 cut(s) 47, 288, 434
Hsp92II CATG 1 cut(s) 233
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 34, 104, 150, 201, 300, 347, 358
LweI GCATC 2 cut(s) 33, 58
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 205
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 27, 96
MslI CAYNNNNRTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 77, 281
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 27
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 106, 203
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 320
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 235
SetI ASST 5 cut(s) 38, 305, 399, 435, 462
SfaNI GCATC 2 cut(s) 33, 58
SfcI CTRYAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 4 cut(s) 168, 275, 381, 438
SspI AATATT 1 cut(s) 269
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 357
TfiI GAWTC 2 cut(s) 106, 203
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 7 cut(s) 162, 206, 225, 304, 389, 393, 433
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.