RchiOBHm_Chr6g0254311

Thioredoxin domain-containing protein 9 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
9377674 .. 9378396
723 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGATTGGTTTTGTAGATAATCGAGCAGCAAGTGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCATAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACTAGCTAGAGGCGAGGTTGACTAG

Protein Analysis

65

Amino Acids

7.04

Weight (kDa)

4.39

Isoelectric Point (pI)

13.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 145
AluBI AGCT 3 cut(s) 64, 142, 179
AluI AGCT 3 cut(s) 64, 142, 179
ApeKI GCWGC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 38
BfaI CTAG 3 cut(s) 176, 180, 196
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BpuEI CTTGAG 1 cut(s) 50
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 109
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 36, 52
BstF5I GGATG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 64, 142, 179
CviKI_1 RGCY 3 cut(s) 64, 142, 179
DdeI CTNAG 2 cut(s) 36, 52
Eco57I CTGAAG 1 cut(s) 145
FaiI YATR 2 cut(s) 110, 123
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 176, 180, 196
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 36, 52
LpnPI CCDG 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 3 cut(s) 176, 180, 196
MboII GAAGA 2 cut(s) 71, 182
MmeI TCCRAC 2 cut(s) 107, 109
MnlI CCTC 2 cut(s) 176, 181
MseI TTAA 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 32
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 27
SetI ASST 4 cut(s) 66, 144, 181, 192
SgeI CNNG 7 cut(s) 35, 42, 79, 101, 155, 188, 192
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SsiI CCGC 1 cut(s) 56
SspMI CTAG 3 cut(s) 176, 180, 196
TaqI TCGA 1 cut(s) 22
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 1 cut(s) 26
XspI CTAG 3 cut(s) 176, 180, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.