SpoU rRNA Methylase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38020 |
| fragaria_vesca | FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 FvH4_1g19321 |
| malus_domestica | MD01G1041100.v1.1 |
| prunus_persica | Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 Prupe.6G204900_v2.0.a1 |
| pyrus_communis | pycom01g06880 |
| rosa_chinensis | RchiOBHm_Chr6g0269301 |
| rosa_laevigata | RLG00000017832 |
| rosa_multiflora | Rmu_co8055466.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00133020 |
| rosa_rugosa | Rorug02G0168800 Rorug02G0168900 |
| rosa_samantha | Rh2AG221100 Rh2BG231200 Rh2CG223500 Rh2DG227300 |
| rosa_wichuraiana | Rw2G017060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 212 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| AseI | ATTAAT | 1 cut(s) | 129 |
| AsuHPI | GGTGA | 1 cut(s) | 346 |
| BccI | CCATC | 4 cut(s) | 40, 76, 304, 317 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BmiI | GGNNCC | 2 cut(s) | 117, 293 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 318, 348 |
| Bse1I | ACTGG | 1 cut(s) | 105 |
| Bse3DI | GCAATG | 2 cut(s) | 59, 222 |
| BseGI | GGATG | 2 cut(s) | 195, 296 |
| BseMI | GCAATG | 2 cut(s) | 59, 222 |
| BseNI | ACTGG | 1 cut(s) | 105 |
| BspLI | GGNNCC | 2 cut(s) | 117, 293 |
| BspMAI | CTGCAG | 1 cut(s) | 169 |
| BsrDI | GCAATG | 2 cut(s) | 59, 222 |
| BsrI | ACTGG | 1 cut(s) | 105 |
| BstDEI | CTNAG | 1 cut(s) | 350 |
| BstF5I | GGATG | 2 cut(s) | 195, 296 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BtsCI | GGATG | 2 cut(s) | 195, 296 |
| BtsI | GCAGTG | 1 cut(s) | 174 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 342 |
| CviJI | RGCY | 2 cut(s) | 181, 221 |
| CviKI_1 | RGCY | 2 cut(s) | 181, 221 |
| DdeI | CTNAG | 1 cut(s) | 350 |
| Eco32I | GATATC | 1 cut(s) | 253 |
| EcoRV | GATATC | 1 cut(s) | 253 |
| FaiI | YATR | 4 cut(s) | 43, 80, 358, 394 |
| FokI | GGATG | 2 cut(s) | 202, 283 |
| FspBI | CTAG | 1 cut(s) | 314 |
| HincII | GTYRAC | 1 cut(s) | 198 |
| HindII | GTYRAC | 1 cut(s) | 198 |
| HindIII | AAGCTT | 1 cut(s) | 179 |
| HinfI | GANTC | 2 cut(s) | 203, 337 |
| HpaI | GTTAAC | 1 cut(s) | 198 |
| HphI | GGTGA | 1 cut(s) | 346 |
| Hpy166II | GTNNAC | 1 cut(s) | 198 |
| Hpy188I | TCNGA | 2 cut(s) | 37, 54 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 4 cut(s) | 64, 154, 167, 392 |
| HpyF3I | CTNAG | 1 cut(s) | 350 |
| KspAI | GTTAAC | 1 cut(s) | 198 |
| LpnPI | CCDG | 4 cut(s) | 86, 132, 171, 317 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 130, 277 |
| MnlI | CCTC | 2 cut(s) | 106, 265 |
| MseI | TTAA | 4 cut(s) | 129, 197, 224, 384 |
| NlaIV | GGNNCC | 2 cut(s) | 117, 293 |
| PfeI | GAWTC | 2 cut(s) | 203, 337 |
| PshBI | ATTAAT | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 117, 293 |
| PstI | CTGCAG | 1 cut(s) | 169 |
| SaqAI | TTAA | 4 cut(s) | 129, 197, 224, 384 |
| SetI | ASST | 5 cut(s) | 117, 183, 238, 336, 351 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| Sse9I | AATT | 2 cut(s) | 130, 277 |
| SspMI | CTAG | 1 cut(s) | 314 |
| TaqI | TCGA | 1 cut(s) | 307 |
| TasI | AATT | 2 cut(s) | 130, 277 |
| TfiI | GAWTC | 2 cut(s) | 203, 337 |
| Tru1I | TTAA | 4 cut(s) | 129, 197, 224, 384 |
| Tru9I | TTAA | 4 cut(s) | 129, 197, 224, 384 |
| TscAI | CASTG | 2 cut(s) | 174, 349 |
| TspDTI | ATGAA | 2 cut(s) | 188, 279 |
| TspRI | CASTG | 2 cut(s) | 174, 349 |
| VspI | ATTAAT | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 314 |