Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006799

Physical Location & Seq

Genomic Coordinates Forward (+)

44522727 .. 44524494

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTTTCTCTTCATTTTCCAAAGTCTCCCTTCTGCTCTTCATTGTGCCTTTCTGTTTAGGCACTTATTGTCTGGCTCATGATTTTTCGATCGTGGGTTATTCACCCGAGCACTTGTCTTCCATGGACAAGTTCATTGAGCTCTTCGAGTCATGGATATCGAAACATGGCAAGATTTACCACGACATGGAGGAGAAGCTCCATAGGTTCGAGATATTCAGAGACAATGTCAAGCACATTGATGAAAGGAATAAGAAGCTTGATGTTGACAGCTACTGGCTTGGATTGAATGAGTTTGCTGACTTGAGCCACGAAGAGTTCAAAAGCAAGTACTTGGGGCTAAAAGGTGAATCCCCAAGAAGGAGAGACTCCTCTGAAGAAGAGTTCAGTTACCGTGATTTCGACGTAGCAGAGGCATTGCCCAAGTCTGTGGACTGGAGAAAGAAAGGAGCTGTTACTCCAGTCAAGAACCAAGGTTCATGTGGTAGCTGTTGGGCATTTTCTACAGTTGCTGCTGTTGAAGGCATAAACCAGATAGTCACAGGAAACCTAACATCGCTGTCTGAACAGCAACTGATAGATTGTGACAAATCATTCAACAATGGCTGCAATGGCGGTTTGATGGACTATGCTTTTCAATTTATCATCTCTAATGGTGGGCTTCACAAGGAGGAAGAATACCCCTATATCATGGACGAAGGAACTTGTGAGGAATCAAGGGGACAATCAGAGGTGGTGACCATATCTGGTTATCAAGATGTGCCTCAAAATAGTGAACAAGCTCTCCTCAAGGCACTGGCTCACCAGCCCATTAGTGTTGCTATTGAGGCCTCTGACAGAGATTTCCAGTTCTACAGTGGGGGTGTGTTCAACGGGCGATGTGGTACTGAGCTAGATCATGGTGTAGCAGCAGTCGGCTATGGAACATCAAAGGGGTTGGATTACATCATTGTGAAGAACTCATGGGGACTGAAGTGGGGAGAGAAGGGATACATAAGGATGAAGAGAAACACAGGAAAGGCAGAAGGAATCTGCGGTATCAACAAAATGGCTTCATATCCCACCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0010623 GO:0012501 GO:0016787 GO:0019538 GO:0030154 GO:0030163 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

358

Amino Acids

40.21

Weight (kDa)

5.65

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	49 - 107	4.2e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	140 - 355	3.6e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20850 AT4G35350 AT4G35350
fragaria_vesca	FvH4_2g16940
malus_domestica	MD05G1141100.v1.1 MD10G1142500.v1.1 MD11G1242400.v1.1
prunus_persica	Prupe.8G181100_v2.0.a1
pyrus_communis	pycom05g13650
rosa_chinensis	RchiOBHm_Chr6g0281081 RchiOBHm_Chr6g0281131
rosa_laevigata	RLG00000012992 RLG00000012998
rosa_multiflora	Rmu_co8502169.1_g000002 Rmu_sc0001705.1_g000005 Rmu_sc0001705.1_g000018
rosa_roxburghii	Rroxscaffold_7G00187270 Rroxscaffold_7G00187300 Rroxscaffold_7G00187320
rosa_rugosa	Rorug06G0138900 Rorug06G0139000 Rorug06G0139100
rosa_samantha	Rh6BG253900 Rh6BG254100
rosa_wichuraiana	Rw6G021770 Rw6G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	2 cut(s)	615, 1035
AcuI	CTGAAG	2 cut(s)	396, 992
AfaI	GTAC	2 cut(s)	332, 886
AfiI	CCNNNNNNNGG	2 cut(s)	187, 360
AgsI	TTSAA	6 cut(s)	289, 322, 521, 598, 638, 871
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	8 cut(s)	142, 199, 259, 273, 452, 489, 782, 892
AluI	AGCT	8 cut(s)	142, 199, 259, 273, 452, 489, 782, 892
Alw21I	GWGCWC	2 cut(s)	114, 144
Alw26I	GTCTC	3 cut(s)	31, 216, 360
AlwNI	CAGNNNCTG	3 cut(s)	276, 512, 574
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	3 cut(s)	512, 606, 908
AsuHPI	GGTGA	4 cut(s)	96, 359, 748, 794
AvaI	CYCGRG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	114, 144
BbvI	GCAGC	3 cut(s)	499, 593, 920
BccI	CCATC	1 cut(s)	616
BciVI	GTATCC	1 cut(s)	983
BcoDI	GTCTC	3 cut(s)	31, 216, 360
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	2 cut(s)	504, 853
BfuI	GTATCC	1 cut(s)	983
BisI	GCNGC	3 cut(s)	513, 607, 909
BlsI	GCNGC	3 cut(s)	514, 608, 910
BmcAI	AGTACT	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	444, 457
BpuEI	CTTGAG	2 cut(s)	325, 773
BsaJI	CCNNGG	2 cut(s)	123, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 360
Bse1I	ACTGG	5 cut(s)	281, 440, 461, 801, 847
Bse3DI	GCAATG	2 cut(s)	416, 616
BseDI	CCNNGG	2 cut(s)	123, 472
BseGI	GGATG	1 cut(s)	1005
BseLI	CCNNNNNNNGG	2 cut(s)	187, 360
BseMI	GCAATG	2 cut(s)	416, 616
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	5 cut(s)	281, 440, 461, 801, 847
BseRI	GAGGAG	3 cut(s)	206, 361, 776
BseXI	GCAGC	3 cut(s)	499, 593, 920
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	830
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	114, 144
BsiHKCI	CYCGRG	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	735, 981
BslI	CCNNNNNNNGG	2 cut(s)	187, 360
BsmAI	GTCTC	3 cut(s)	31, 216, 360
BsmFI	GGGAC	2 cut(s)	735, 981
BsnI	GGCC	1 cut(s)	830
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	114, 144
Bsp143I	GATC	2 cut(s)	90, 895
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	615, 1035
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	79
BspQI	GCTCTTC	2 cut(s)	44, 149
BsrDI	GCAATG	2 cut(s)	416, 616
BsrI	ACTGG	5 cut(s)	281, 440, 461, 801, 847
BssECI	CCNNGG	2 cut(s)	123, 472
BssMI	GATC	2 cut(s)	90, 895
BssT1I	CCWWGG	2 cut(s)	123, 472
Bst4CI	ACNGT	3 cut(s)	395, 508, 857
Bst6I	CTCTTC	6 cut(s)	16, 44, 149, 309, 375, 998
BstDEI	CTNAG	1 cut(s)	888
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	1 cut(s)	1005
BstKTI	GATC	2 cut(s)	93, 898
BstMAI	GTCTC	3 cut(s)	31, 216, 360
BstMBI	GATC	2 cut(s)	90, 895
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	612, 827
BstPI	GGTNACC	1 cut(s)	736
BstSFI	CTRYAG	2 cut(s)	504, 853
BstV1I	GCAGC	3 cut(s)	499, 593, 920
BstV2I	GAAGAC	1 cut(s)	111
BstXI	CCANNNNNNTGG	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	983
BsuRI	GGCC	1 cut(s)	830
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	2 cut(s)	540, 892
BtsCI	GGATG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	794, 862
CaiI	CAGNNNCTG	3 cut(s)	276, 512, 574
CciI	TCATGA	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	331, 885
CviAII	CATG	9 cut(s)	80, 124, 153, 167, 187, 480, 691, 899, 963
CviQI	GTAC	2 cut(s)	331, 885
DdeI	CTNAG	1 cut(s)	888
DpnI	GATC	2 cut(s)	92, 897
DpnII	GATC	2 cut(s)	90, 895
Eam1104I	CTCTTC	6 cut(s)	16, 44, 149, 309, 375, 998
EarI	CTCTTC	6 cut(s)	16, 44, 149, 309, 375, 998
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	123, 472
Eco147I	AGGCCT	1 cut(s)	830
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	396, 992
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	736
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	123, 472
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	123, 472
FaeI	CATG	9 cut(s)	83, 127, 156, 170, 190, 483, 694, 902, 966
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	2 cut(s)	735, 981
FatI	CATG	9 cut(s)	79, 123, 152, 166, 186, 479, 690, 898, 962
Fnu4HI	GCNGC	3 cut(s)	513, 607, 909
FokI	GGATG	1 cut(s)	1012
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	513, 607, 909
FspBI	CTAG	1 cut(s)	893
GluI	GCNGC	3 cut(s)	513, 607, 909
GsuI	CTGGAG	2 cut(s)	444, 457
HaeIII	GGCC	1 cut(s)	830
Hin1II	CATG	9 cut(s)	83, 127, 156, 170, 190, 483, 694, 902, 966
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	5 cut(s)	149, 350, 368, 713, 1029
HphI	GGTGA	4 cut(s)	96, 359, 748, 794
Hpy166II	GTNNAC	3 cut(s)	268, 433, 776
Hpy188I	TCNGA	5 cut(s)	221, 376, 565, 730, 835
Hpy188III	TCNNGA	4 cut(s)	80, 211, 466, 755
Hpy8I	GTNNAC	3 cut(s)	268, 433, 776
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	6 cut(s)	41, 354, 515, 692, 979, 1019
HpyCH4III	ACNGT	3 cut(s)	395, 508, 857
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	612, 827
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	9 cut(s)	83, 127, 156, 170, 190, 483, 694, 902, 966
Kzo9I	GATC	2 cut(s)	90, 895
LguI	GCTCTTC	2 cut(s)	44, 149
LmnI	GCTCC	2 cut(s)	204, 449
Lsp1109I	GCAGC	3 cut(s)	499, 593, 920
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	5 cut(s)	389, 454, 538, 584, 736
MalI	GATC	2 cut(s)	92, 897
MboI	GATC	2 cut(s)	90, 895
MhlI	GDGCHC	2 cut(s)	114, 144
MluCI	AATT	1 cut(s)	638
MlyI	GAGTC	2 cut(s)	158, 362
MmeI	TCCRAC	1 cut(s)	918
MslI	CAYNNNNRTG	3 cut(s)	240, 950, 998
MwoI	GCNNNNNNNGC	2 cut(s)	612, 827
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	90, 895
NlaIII	CATG	9 cut(s)	83, 127, 156, 170, 190, 483, 694, 902, 966
NmuCI	GTSAC	3 cut(s)	538, 584, 736
PagI	TCATGA	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	830
PciSI	GCTCTTC	2 cut(s)	44, 149
PfeI	GAWTC	3 cut(s)	350, 713, 1029
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	514, 608, 910
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	2 cut(s)	157, 362
PpsI	GAGTC	2 cut(s)	157, 362
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	736
PstNI	CAGNNNCTG	3 cut(s)	276, 512, 574
PsyI	GACNNNGTC	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	93
RsaI	GTAC	2 cut(s)	332, 886
RsaNI	GTAC	2 cut(s)	331, 885
RseI	CAYNNNNRTG	3 cut(s)	240, 950, 998
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	44, 149
SatI	GCNGC	3 cut(s)	513, 607, 909
Sau3AI	GATC	2 cut(s)	90, 895
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	2 cut(s)	158, 362
SduI	GDGCHC	2 cut(s)	114, 144
SfcI	CTRYAG	2 cut(s)	504, 853
SmiMI	CAYNNNNRTG	3 cut(s)	240, 950, 998
SmlI	CTYRAG	2 cut(s)	304, 788
SmoI	CTYRAG	2 cut(s)	304, 788
Sse9I	AATT	1 cut(s)	638
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	2 cut(s)	615, 1035
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	830
StyI	CCWWGG	2 cut(s)	123, 472
TaaI	ACNGT	3 cut(s)	395, 508, 857
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	89, 147, 161, 210, 402
TasI	AATT	1 cut(s)	638
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	350, 713, 1029
TscAI	CASTG	2 cut(s)	801, 862
TseFI	GTSAC	3 cut(s)	538, 584, 736
TseI	GCWGC	3 cut(s)	512, 606, 908
Tsp45I	GTSAC	3 cut(s)	538, 584, 736
TspDTI	ATGAA	6 cut(s)	31, 124, 258, 468, 1016, 1044
TspRI	CASTG	2 cut(s)	801, 862
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	2 cut(s)	479, 854
XspI	CTAG	1 cut(s)	893
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.