Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010768

Physical Location & Seq

Genomic Coordinates Forward (+)

412613 .. 414382

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCATCTGGGATCATCACGAGCTCAGGAGGAGTACTGAAAAGTGTGAACGGCAGATGGAGATCAGTTTGCATAGCTTCTTTGGCTCTCTGTTTCGTTTTTATGCTTCCTTTGCTCTTCGTGGAGGACTTGTTTCACATGGGAGGAACTCAGGGTACTGCAGCAGCTGGGGAAATAGATGACATTAAGAGACTAGTGGTCTTTACCAAGAAAAACACCAACACTGCCGCCCTATTTGGACCTCGACCTGGTCGGAAGCTGTTGCAGTCATCTGATGGAGATGGAGATGGAGATGGATCAGATGAAAATGGGGAAGGAGAAGGATCAGATGGAAATGGAAATGGAAATGGAGATGGATCAGATGGGGGTGACATGAATCCAGTTGGGAAAGCATGCTCAAAGGACGACATAACAATCTTCCAAGGGGAAACGGCTCCACTCCCAAGTGGAATTCCGGCTTACACAGTTCAGATCCTCAACACGTGCGTCTCAGGTTGCAGCATCTCTGACATTCACATCAACTGTGGATGGTTTAGCTCCGCCCGCCTTGTCAATCCTAAAGTCTTCAGGCGCATGGACTACAACGACTGCCTAGTCAATGATGGTCAGCCTCTTGGCCCTGGACAAACCCTCTCTTTCCAATATGCCAATAGCTTTCGTTACCCTCTCTCTGTTTCGTCTGTAGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

24.07

Weight (kDa)

4.74

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	133 - 230	1.5e-42	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32583 AT1G32583
fragaria_vesca	FvH4_3g00520
malus_domestica	MD00G1057600.v1.1
prunus_persica	Prupe.4G006300_v2.0.a1
pyrus_communis	pycom05g32640
rosa_chinensis	RchiOBHm_Chr5g0000721
rosa_laevigata	RLG00000030889
rosa_multiflora	Rmu_sc0000255.1_g000002 Rmu_sc0011992.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075510
rosa_rugosa	Rorug04G0386100 Rorug04G0386100
rosa_samantha	Rh5AG005900 Rh5BG007600 Rh5BG007700 Rh5CG006400 Rh5DG006300 Rh5DG006400
rosa_wichuraiana	Rw5G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AciI	CCGC	3 cut(s)	228, 540, 544
AclWI	GGATC	5 cut(s)	20, 304, 331, 364, 466
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	550
AcvI	CACGTG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	36, 157
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	480
AhdI	GACNNNNNGTC	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	247, 619
AluBI	AGCT	7 cut(s)	24, 77, 167, 259, 537, 654, 686
AluI	AGCT	7 cut(s)	24, 77, 167, 259, 537, 654, 686
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	184, 493
AlwI	GGATC	5 cut(s)	20, 304, 331, 364, 466
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	161, 164, 498
ApoI	RAATTY	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	239, 617
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	19
BbrPI	CACGTG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	173, 176, 510
BceAI	ACGGC	2 cut(s)	67, 447
BciT130I	CCWGG	2 cut(s)	249, 621
BcoDI	GTCTC	2 cut(s)	184, 493
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	2 cut(s)	194, 593
BfmI	CTRYAG	2 cut(s)	159, 681
BisI	GCNGC	4 cut(s)	162, 165, 228, 499
BlsI	GCNGC	4 cut(s)	163, 166, 229, 500
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	249, 621
Bme18I	GGWCC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	239, 617
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	249, 621
BmsI	GCATC	2 cut(s)	14, 510
BpiI	GAAGAC	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	421, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	249, 621
BseDI	CCNNGG	2 cut(s)	421, 619
BseGI	GGATG	1 cut(s)	533
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	3 cut(s)	39, 164, 504
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	173, 176, 510
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	184, 493
BsmBI	CGTCTC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
BspACI	CCGC	3 cut(s)	228, 540, 544
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	3 cut(s)	38, 163, 503
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	5 cut(s)	20, 304, 331, 364, 466
BspQI	GCTCTTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	421, 619
BssMI	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	249, 621
Bst4CI	ACNGT	2 cut(s)	466, 524
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	394, 544
BstDEI	CTNAG	3 cut(s)	25, 150, 490
BstF5I	GGATG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	6 cut(s)	15, 65, 299, 326, 359, 474
BstMAI	GTCTC	2 cut(s)	184, 493
BstMBI	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 112, 543
BstNI	CCWGG	2 cut(s)	249, 621
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	247, 619
BstSFI	CTRYAG	2 cut(s)	159, 681
BstV1I	GCAGC	3 cut(s)	173, 176, 510
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	533
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	394, 544
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	2 cut(s)	239, 617
CseI	GACGC	1 cut(s)	475
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	35, 156
CviAII	CATG	4 cut(s)	139, 373, 393, 574
CviQI	GTAC	2 cut(s)	35, 156
DdeI	CTNAG	3 cut(s)	25, 150, 490
DpnI	GATC	6 cut(s)	14, 64, 298, 325, 358, 473
DpnII	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
DrdI	GACNNNNNNGTC	1 cut(s)	593
DriI	GACNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	550
Eco72I	CACGTG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	450
EcoRII	CCWGG	2 cut(s)	247, 619
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	4 cut(s)	142, 376, 396, 577
FaiI	YATR	8 cut(s)	74, 104, 140, 374, 394, 410, 575, 645
FatI	CATG	4 cut(s)	138, 372, 392, 573
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	4 cut(s)	162, 165, 228, 499
FokI	GGATG	1 cut(s)	540
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	162, 165, 228, 499
FspBI	CTAG	2 cut(s)	194, 593
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	4 cut(s)	162, 165, 228, 499
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	618
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	142, 376, 396, 577
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	7 cut(s)	255, 274, 301, 328, 361, 471, 508
Hpy188III	TCNNGA	2 cut(s)	19, 27
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	308, 314
HpyCH4III	ACNGT	2 cut(s)	466, 524
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	4 cut(s)	72, 161, 265, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 112, 543
HpyF3I	CTNAG	3 cut(s)	25, 150, 490
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	4 cut(s)	142, 376, 396, 577
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	439, 542
Lsp1109I	GCAGC	3 cut(s)	173, 176, 510
LweI	GCATC	2 cut(s)	14, 510
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	2 cut(s)	194, 593
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	368, 659
MalI	GATC	6 cut(s)	14, 64, 298, 325, 358, 473
MboI	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
MboII	GAAGA	3 cut(s)	109, 409, 556
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	23, 118, 137, 252, 485, 621, 641, 675
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	249, 621
MvaI	CCWGG	2 cut(s)	249, 621
MwoI	GCNNNNNNNGC	3 cut(s)	83, 112, 543
NdeII	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
NlaIII	CATG	4 cut(s)	142, 376, 396, 577
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	163, 166, 229, 500
PmaCI	CACGTG	1 cut(s)	483
PmlI	CACGTG	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	247, 619
PspCI	CACGTG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	247, 619
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	239, 617
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	471
PsyI	GACNNNGTC	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	36, 157
RsaNI	GTAC	2 cut(s)	35, 156
SacI	GAGCTC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	162, 165, 228, 499
Sau3AI	GATC	6 cut(s)	12, 62, 296, 323, 356, 471
Sau96I	GGNCC	2 cut(s)	239, 617
ScaI	AGTACT	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	249, 621
SduI	GDGCHC	1 cut(s)	26
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	14, 510
SfcI	CTRYAG	2 cut(s)	159, 681
SinI	GGWCC	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	193
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	3 cut(s)	228, 540, 544
SspMI	CTAG	2 cut(s)	194, 593
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	247, 619
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	466, 524
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	244
TasI	AATT	1 cut(s)	450
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	161, 164, 498
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	318, 389
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	1 cut(s)	396
XspI	CTAG	2 cut(s)	194, 593
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.