Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007492

Physical Location & Seq

Genomic Coordinates Reverse (-)

6301639 .. 6302942

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATTCTAATGAAGCAAAGGACTTGTTCCAAGCTCAATCTCATGTGTACAAACACATATTCAACTTCGTGAGTTCTATGTCACTCAAGTGTGCAGTTCAGCTAGGCATACCAGACGTAATTAACAGCCATGGCCAAGCCATTACTCTACAGGAATTGGTCACAGCACTTCAACTTCACCCAGCTAAATCTGGCTACGTGCAGCGGCTCATGCGTCTGATGGTACACTCTGGTTTCTTTGCTACGAAAAAAGTCTGTAAGAATCATGATGAACAAGAGGAAGAGGCCTATGATCTTACACCGTCTTCTAGGCTCCTCCTGAAAAACAAGGTCCCGAGTTTGTTACCGTTTGCTCTGGGGATGTTTGATCCAGCTTTTGCAACCCCATGGCAGTTTTTGGGAAATTGGTTCCGAGGGAACGAGCTCACACCGTTTGAGACTGCACATGGGATGGGATTTTGGGAATACGGAGACAAAAACCCTGAATTCAACAGTGTTTTCAATGAAGCAATGGCCAGTGATTCCGGAATGATGAACTTGGTCATCAAAGACTGCAAGCCAATCTTTGAGGGGTTGACTTCTTTAGTTGATGTAGGAGGTGGTTCTGGAAAAGTTGCTAGGATCCTTTGTGAGGCTTTCCCCAGCTTGAATTGCACAGTTCTTGAACTTCCACAAGTTGTTGCTGACTTGCCGGATAGTGCGAATTTGAAGTTCATTGCAGGTGATATGTTCAATGCTATTCCTCCAGCTGATGCTATCCTGCTCAAGTTAACTTTACATGCTTTGAACGACGAGGAATGCTTGAAGGTTCTGAAGAAATGCAGGGAAGCCATTCCAGGCAATGGCCAAGGAAAGGTTATTATCATAGACATTGTGATAAACGCGGAGAAAGACGAGCACGAATCAATTGAAGCAAAGCTCTTCTTTGACATGTTGATGATGGTTGTGGTGACCGGAAGAGAGAGAAGTGAGAAAGAGTGGGAAAAGCTCTTTCTGGAGGCTGGTTTCAGCAAATACAAGATAACACCCATCTTTGGTTTAAGGTCCCTTATTGAAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009820 GO:0009821 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030766 GO:0032259 GO:0034641 GO:0042802 GO:0042803 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044464 GO:0046983 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

355

Amino Acids

39.58

Weight (kDa)

5.36

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 108	3.9e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	130 - 337	2.4e-51	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007492)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08410
malus_domestica	MD05G1308600.v1.1 MD05G1308800.v1.1
prunus_persica	Prupe.4G054200_v2.0.a1
pyrus_communis	pycom05g28530 pycom05g28540
rosa_chinensis	RchiOBHm_Chr5g0009461 RchiOBHm_Chr5g0009471
rosa_laevigata	RLG00000031664
rosa_multiflora	Rmu_sc0002711.1_g000015 Rmu_sc0002711.1_g000016
rosa_roxburghii	Rroxscaffold_1G00066660 Rroxscaffold_1G00067360
rosa_rugosa	Rorug04G0443300 Rorug04G0443300
rosa_samantha	Rh5AG074300 Rh5AG074400 Rh5BG070100 Rh5BG070200 Rh5CG082500 Rh5CG082600 Rh5DG070400 Rh5DG070500
rosa_wichuraiana	Rw5G006880 Rw5G006890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccII	CGCG	1 cut(s)	884
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	2 cut(s)	205, 884
AclWI	GGATC	3 cut(s)	362, 616, 629
AcoI	YGGCCR	3 cut(s)	133, 513, 844
AcsI	RAATTY	2 cut(s)	485, 703
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	2 cut(s)	50, 225
AfiI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
AflIII	ACRYGT	1 cut(s)	930
AjnI	CCWGG	1 cut(s)	835
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	9 cut(s)	35, 103, 185, 374, 424, 645, 749, 919, 988
AluI	AGCT	9 cut(s)	35, 103, 185, 374, 424, 645, 749, 919, 988
Alw21I	GWGCWC	2 cut(s)	426, 900
Alw26I	GTCTC	2 cut(s)	431, 465
AlwI	GGATC	3 cut(s)	362, 616, 629
Ama87I	CYCGRG	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	4 cut(s)	133, 285, 513, 844
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	2 cut(s)	485, 703
Asp700I	GAANNNNTTC	1 cut(s)	831
AspS9I	GGNCC	2 cut(s)	331, 1044
AsuHPI	GGTGA	3 cut(s)	170, 734, 961
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	331, 1044
BalI	TGGCCA	3 cut(s)	135, 515, 846
BamHI	GGATCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	426, 900
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	4 cut(s)	214, 445, 934, 1037
BciT130I	CCWGG	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	431, 465
BfaI	CTAG	3 cut(s)	104, 309, 618
BfmI	CTRYAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	710
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	2 cut(s)	331, 1044
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	331, 1044
BmiI	GGNNCC	5 cut(s)	314, 333, 410, 623, 1046
BmrFI	CCNGG	1 cut(s)	837
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	729, 1016
BpuEI	CTTGAG	2 cut(s)	71, 749
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	130, 386, 412, 847
BsaWI	WCCGGW	2 cut(s)	524, 953
Bsc4I	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	3 cut(s)	516, 714, 847
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	130, 386, 412, 847
BseGI	GGATG	2 cut(s)	366, 456
BseLI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
BseMI	GCAATG	3 cut(s)	516, 714, 847
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	2 cut(s)	181, 641
BsgI	GTGCAG	3 cut(s)	114, 221, 426
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	4 cut(s)	135, 287, 515, 846
BsiHKAI	GWGCWC	2 cut(s)	426, 900
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	525, 692, 954
BslFI	GGGAC	2 cut(s)	317, 1030
BslI	CCNNNNNNNGG	4 cut(s)	631, 842, 853, 1034
BsmAI	GTCTC	2 cut(s)	431, 465
BsmFI	GGGAC	2 cut(s)	317, 1030
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	4 cut(s)	135, 287, 515, 846
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	426, 900
Bsp13I	TCCGGA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	292, 367, 621
Bsp19I	CCATGG	2 cut(s)	130, 386
BspACI	CCGC	2 cut(s)	205, 884
BspANI	GGCC	4 cut(s)	135, 287, 515, 846
BspEI	TCCGGA	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	884
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	5 cut(s)	314, 333, 410, 623, 1046
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	362, 616, 629
BspQI	GCTCTTC	1 cut(s)	926
BsrDI	GCAATG	3 cut(s)	516, 714, 847
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	4 cut(s)	130, 386, 412, 847
BssMI	GATC	3 cut(s)	292, 367, 621
BssT1I	CCWWGG	3 cut(s)	130, 386, 847
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	5 cut(s)	303, 348, 432, 494, 658
Bst6I	CTCTTC	3 cut(s)	276, 926, 952
BstAUI	TGTACA	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	1 cut(s)	1065
BstDSI	CCRYGG	2 cut(s)	130, 386
BstEII	GGTNACC	1 cut(s)	949
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	366, 456
BstFNI	CGCG	1 cut(s)	884
BstKTI	GATC	3 cut(s)	295, 370, 624
BstMAI	GTCTC	2 cut(s)	431, 465
BstMBI	GATC	3 cut(s)	292, 367, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 651
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	2 cut(s)	782, 934
BstPI	GGTNACC	1 cut(s)	949
BstSCI	CCNGG	1 cut(s)	835
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	135, 287, 515, 846
BtgI	CCRYGG	2 cut(s)	130, 386
BtsCI	GGATG	2 cut(s)	366, 456
BtsIMutI	CAGTG	2 cut(s)	499, 523
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	557
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	331, 1044
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	49, 224
CviAII	CATG	8 cut(s)	44, 131, 211, 266, 387, 446, 779, 931
CviQI	GTAC	2 cut(s)	49, 224
DdeI	CTNAG	1 cut(s)	1065
DpnI	GATC	3 cut(s)	294, 369, 623
DpnII	GATC	3 cut(s)	292, 367, 621
EaeI	YGGCCR	3 cut(s)	133, 513, 844
Eam1104I	CTCTTC	3 cut(s)	276, 926, 952
EarI	CTCTTC	3 cut(s)	276, 926, 952
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	130, 386, 847
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	331, 1044
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	949
EcoICRI	GAGCTC	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	331, 1044
EcoO65I	GGTNACC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	3 cut(s)	130, 386, 847
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	3 cut(s)	130, 386, 847
FaeI	CATG	8 cut(s)	47, 134, 214, 269, 390, 449, 782, 934
FalI	AAGNNNNNCTT	4 cut(s)	548, 580, 908, 940
FaqI	GGGAC	2 cut(s)	317, 1030
FatI	CATG	8 cut(s)	43, 130, 210, 265, 386, 445, 778, 930
Fnu4HI	GCNGC	2 cut(s)	203, 206
FokI	GGATG	2 cut(s)	373, 463
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	3 cut(s)	104, 309, 618
GluI	GCNGC	2 cut(s)	203, 206
GsaI	CCCAGC	2 cut(s)	185, 645
GsuI	CTGGAG	2 cut(s)	729, 1016
HaeIII	GGCC	4 cut(s)	135, 287, 515, 846
HapII	CCGG	3 cut(s)	525, 692, 954
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	8 cut(s)	47, 134, 214, 269, 390, 449, 782, 934
HincII	GTYRAC	2 cut(s)	576, 771
HindII	GTYRAC	2 cut(s)	576, 771
HinfI	GANTC	4 cut(s)	5, 262, 521, 902
HpaI	GTTAAC	1 cut(s)	771
HpaII	CCGG	3 cut(s)	525, 692, 954
HphI	GGTGA	3 cut(s)	170, 734, 961
Hpy166II	GTNNAC	4 cut(s)	49, 226, 576, 771
Hpy188I	TCNGA	3 cut(s)	219, 413, 813
Hpy188III	TCNNGA	8 cut(s)	70, 266, 319, 334, 525, 606, 662, 995
Hpy8I	GTNNAC	4 cut(s)	49, 226, 576, 771
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	5 cut(s)	303, 348, 432, 494, 658
HpyCH4IV	ACGT	2 cut(s)	117, 198
HpyCH4V	TGCA	8 cut(s)	95, 202, 380, 443, 555, 654, 719, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 651
HpyF3I	CTNAG	1 cut(s)	1065
HpySE526I	ACGT	2 cut(s)	117, 198
Hsp92II	CATG	8 cut(s)	47, 134, 214, 269, 390, 449, 782, 934
Kpn2I	TCCGGA	1 cut(s)	524
KspAI	GTTAAC	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	292, 367, 621
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	3 cut(s)	104, 309, 618
MaeII	ACGT	2 cut(s)	117, 198
MaeIII	GTNAC	4 cut(s)	81, 160, 342, 949
MalI	GATC	3 cut(s)	294, 369, 623
MboI	GATC	3 cut(s)	292, 367, 621
MboII	GAAGA	5 cut(s)	293, 297, 826, 913, 969
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	426, 900
MlsI	TGGCCA	3 cut(s)	135, 515, 846
MluCI	AATT	7 cut(s)	120, 155, 403, 485, 649, 703, 906
MluNI	TGGCCA	3 cut(s)	135, 515, 846
Mox20I	TGGCCA	3 cut(s)	135, 515, 846
MroI	TCCGGA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	3 cut(s)	135, 515, 846
MseI	TTAA	3 cut(s)	123, 770, 1040
MslI	CAYNNNNRTG	2 cut(s)	88, 935
Msp20I	TGGCCA	3 cut(s)	135, 515, 846
MspA1I	CMGCKG	2 cut(s)	205, 749
MspI	CCGG	3 cut(s)	525, 692, 954
MspR9I	CCNGG	1 cut(s)	837
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	1 cut(s)	837
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	2 cut(s)	211, 651
NcoI	CCATGG	2 cut(s)	130, 386
NdeII	GATC	3 cut(s)	292, 367, 621
NlaIII	CATG	8 cut(s)	47, 134, 214, 269, 390, 449, 782, 934
NlaIV	GGNNCC	5 cut(s)	314, 333, 410, 623, 1046
NmuCI	GTSAC	3 cut(s)	81, 160, 949
NspI	RCATGY	2 cut(s)	782, 934
OliI	CACNNNNGTG	1 cut(s)	88
PagI	TCATGA	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	287
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	926
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	4 cut(s)	5, 262, 521, 902
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	2 cut(s)	204, 207
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	2 cut(s)	331, 1044
PscI	ACATGT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	2 cut(s)	331, 1044
Psp6I	CCWGG	1 cut(s)	835
PspEI	GGTNACC	1 cut(s)	949
PspFI	CCCAGC	2 cut(s)	181, 641
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	5 cut(s)	314, 333, 410, 623, 1046
PspPI	GGNCC	2 cut(s)	331, 1044
PspPPI	RGGWCCY	2 cut(s)	331, 1044
PsuI	RGATCY	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	50, 225
RsaNI	GTAC	2 cut(s)	49, 224
RseI	CAYNNNNRTG	2 cut(s)	88, 935
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	3 cut(s)	123, 770, 1040
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	3 cut(s)	292, 367, 621
Sau96I	GGNCC	2 cut(s)	331, 1044
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	2 cut(s)	426, 900
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	2 cut(s)	331, 1044
SmiMI	CAYNNNNRTG	2 cut(s)	88, 935
SmlI	CTYRAG	2 cut(s)	86, 764
SmoI	CTYRAG	2 cut(s)	86, 764
Sse9I	AATT	7 cut(s)	120, 155, 403, 485, 649, 703, 906
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	205, 884
SspMI	CTAG	3 cut(s)	104, 309, 618
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	3 cut(s)	130, 386, 847
TaaI	ACNGT	5 cut(s)	303, 348, 432, 494, 658
TaiI	ACGT	2 cut(s)	120, 201
TasI	AATT	7 cut(s)	120, 155, 403, 485, 649, 703, 906
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	4 cut(s)	5, 262, 521, 902
Tru1I	TTAA	3 cut(s)	123, 770, 1040
Tru9I	TTAA	3 cut(s)	123, 770, 1040
TscAI	CASTG	2 cut(s)	499, 523
TseFI	GTSAC	3 cut(s)	81, 160, 949
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	3 cut(s)	81, 160, 949
TspDTI	ATGAA	5 cut(s)	27, 285, 519, 548, 703
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	499, 523
Van91I	CCANNNNNTGG	1 cut(s)	842
VpaK11BI	GGWCC	2 cut(s)	331, 1044
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	2 cut(s)	485, 703
XceI	RCATGY	2 cut(s)	782, 934
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	3 cut(s)	104, 309, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.