RchiOBHm_Chr5g0014241

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010283
Physical Location & Seq
Reverse (-)
9726683 .. 9728183
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 630 bp
ATGGCGCTCTCGGCGTTTCGTGACCGACTCGAACACATGGATCACACTCGTCACCAACGTCTCTCTCTCCTCCAGGTGGAGAAAGAATCGCAGGCGAACAAGTCTCAGGAGCTGGCGTTGAAGCTCGCGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGCGGCTCGACGCGAAATACCAGAGTGATTTAGAGAAATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGGATTGGAGAAGGAGAGGAACAGGTTTTATGAGGTGAAGGGAGCTGAAATGAAGGAGTTTAAGCAAAATGTGGAGAGTTTTGCTTGGGAATGTCAATTGCAGATTGAGAATTTGAAGAATGGTATCAATGAGGTTAAGTCAAGCTTTGTGGAATTTCAAGGCAGTGACAATTGCACAAGTAACTGTGAGATAGCTGCAGCTGAGAAGAGAAAGTCTGAGCTTTTGGCTATGAAGGAAGAGGTGAACAGAAAGCTGGCTTCTAATTACCAAACAAGAGCCCGATTGCAAAAGCAGCTTCAGACCATTCTAATTGCCAATCCTCTACAGAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

209

Amino Acids

24.22

Weight (kDa)

7.64

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 21 - 140 1.2e-21 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 3 cut(s) 128, 179, 233
AciI CCGC 3 cut(s) 151, 179, 223
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 403, 446
AcuI CTGAAG 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 5 cut(s) 121, 193, 271, 409, 452
AjnI CCWGG 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 65, 108
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 148, 488, 491, 586
ApoI RAATTY 2 cut(s) 403, 446
AspLEI GCGC 2 cut(s) 7, 205
AspS9I GGNCC 2 cut(s) 181, 210
AsuHPI GGTGA 3 cut(s) 44, 340, 547
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 574
BbvI GCAGC 4 cut(s) 160, 475, 503, 598
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 65, 108
BfmI CTRYAG 2 cut(s) 489, 617
BfoI RGCGCY 2 cut(s) 8, 206
BglII AGATCT 1 cut(s) 195
BisI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
BlsI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 181, 210
BmrFI CCNGG 1 cut(s) 74
BpmI CTGGAG 2 cut(s) 56, 185
BpuEI CTTGAG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 3 cut(s) 119, 486, 501
BseRI GAGGAG 2 cut(s) 59, 299
BseXI GCAGC 4 cut(s) 160, 475, 503, 598
Bsh1236I CGCG 3 cut(s) 128, 179, 233
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 65, 108
BsmBI CGTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 3 cut(s) 40, 174, 195
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 3 cut(s) 151, 179, 223
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 3 cut(s) 118, 487, 502
BspFNI CGCG 3 cut(s) 128, 179, 233
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 223
BssMI GATC 3 cut(s) 40, 174, 195
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 3 cut(s) 266, 494, 525
BstC8I GCNNGC 5 cut(s) 93, 114, 126, 130, 549
BstDEI CTNAG 3 cut(s) 105, 495, 510
BstFNI CGCG 3 cut(s) 128, 179, 233
BstH2I RGCGCY 2 cut(s) 8, 206
BstHHI GCGC 2 cut(s) 7, 205
BstKTI GATC 3 cut(s) 43, 177, 198
BstMAI GTCTC 2 cut(s) 65, 108
BstMBI GATC 3 cut(s) 40, 174, 195
BstMWI GCNNNNNNNGC 2 cut(s) 11, 586
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 489, 617
BstUI CGCG 3 cut(s) 128, 179, 233
BstV1I GCAGC 4 cut(s) 160, 475, 503, 598
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 5 cut(s) 93, 114, 126, 130, 549
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 7, 205
Cfr13I GGNCC 2 cut(s) 181, 210
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 2 cut(s) 37, 133
DdeI CTNAG 3 cut(s) 105, 495, 510
DpnI GATC 3 cut(s) 42, 176, 197
DpnII GATC 3 cut(s) 40, 174, 195
Eam1104I CTCTTC 3 cut(s) 266, 494, 525
EarI CTCTTC 3 cut(s) 266, 494, 525
Eco24I GRGCYC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 2 cut(s) 40, 136
FaiI YATR 5 cut(s) 38, 134, 324, 524, 628
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 2 cut(s) 36, 132
Fnu4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GlaI GCGC 2 cut(s) 6, 204
GluI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GsuI CTGGAG 2 cut(s) 56, 185
HaeII RGCGCY 2 cut(s) 8, 206
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 7, 205
Hin1II CATG 2 cut(s) 40, 136
Hin6I GCGC 2 cut(s) 5, 203
HinP1I GCGC 2 cut(s) 5, 203
HindIII AAGCTT 2 cut(s) 187, 436
HinfI GANTC 2 cut(s) 27, 86
HpaII CCGG 1 cut(s) 208
HphI GGTGA 3 cut(s) 44, 340, 547
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 3 cut(s) 214, 511, 594
Hpy188III TCNNGA 4 cut(s) 20, 107, 127, 193
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 298, 325, 340, 520, 616
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 394, 468, 491, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 586
HpyF3I CTNAG 3 cut(s) 105, 495, 510
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 40, 136
HspAI GCGC 2 cut(s) 5, 203
Kzo9I GATC 3 cut(s) 40, 174, 195
LmnI GCTCC 6 cut(s) 109, 145, 166, 210, 286, 335
Lsp1109I GCAGC 4 cut(s) 160, 475, 503, 598
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 4 cut(s) 20, 50, 458, 473
MalI GATC 3 cut(s) 42, 176, 197
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 40, 174, 195
MboII GAAGA 5 cut(s) 184, 283, 421, 511, 542
MfeI CAATTG 2 cut(s) 389, 463
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
MlyI GAGTC 1 cut(s) 21
MseI TTAA 2 cut(s) 354, 429
MspA1I CMGCKG 2 cut(s) 151, 494
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 2 cut(s) 389, 463
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 3 cut(s) 128, 179, 233
MwoI GCNNNNNNNGC 2 cut(s) 11, 586
NdeII GATC 3 cut(s) 40, 174, 195
NlaIII CATG 2 cut(s) 40, 136
NmuCI GTSAC 3 cut(s) 20, 50, 458
NruI TCGCGA 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 225
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 2 cut(s) 181, 210
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 494
RruI TCGCGA 1 cut(s) 128
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 354, 429
SatI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
Sau3AI GATC 3 cut(s) 40, 174, 195
Sau96I GGNCC 2 cut(s) 181, 210
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 489, 617
SinI GGWCC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
SsiI CCGC 3 cut(s) 151, 179, 223
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 30, 219, 228
TaqII GACCGA 1 cut(s) 39
TasI AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
TauI GCSGC 2 cut(s) 182, 226
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 354, 429
Tru9I TTAA 2 cut(s) 354, 429
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 3 cut(s) 20, 50, 458
TseI GCWGC 4 cut(s) 148, 488, 491, 586
Tsp45I GTSAC 3 cut(s) 20, 50, 458
TspDTI ATGAA 2 cut(s) 359, 539
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 403, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.