Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013642

Physical Location & Seq

Genomic Coordinates Forward (+)

32665430 .. 32668376

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGAATCTCTTTCTCTCTGCCTTCAAACTCCTCCTCGAAGCCAAACCCTATCGAACCCTCCACTTCCTTCGAAGACGACGACGACGACGACGACACCACTACCCCCAACCTAAACGACGACGCATCGAAACAATACATCCACGAATTCACCGCCGCGGAAGAGCCCTCAGCCAAACCCCGCGTGATCCCGCCCATCCCAAACGAATGGCAGCCGGGGAAGAACACCATGAACAGCCTCGAATTCGTGGCCGAGTCTCTCTCAATCGATGGCTCATATTCCGAGATCCCGTACTGCCTCAATCTCCGGCAGAGACCCGAATCCGAGGAGGCGGTGGTTCAGAAATTGAAAGAGGAATTGAAGGCGTTGCCGGAGATTAGGGGGATGGAGGAGTTTGATGAGAATCCGGTGGAGGGGTTCGGTGCAGCTCTGCTCGCCGGGTACGGGTGGCAACCGGGGCGAGGAATCGGCAAGAACGCAAAGGAAGATGTTGGTGTTGTGGAGGTCCGGGCCAATGTGGGAAGGCAAGGGTTAGGGTTTCGACCGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

183

Amino Acids

20.18

Weight (kDa)

4.45

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	124 - 182	4.3e-16	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22140
prunus_persica	Prupe.4G208700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037991
rosa_laevigata	RLG00000022536 RLG00000032059 RLG00000033830
rosa_multiflora	Rmu_sc0002670.1_g000012 Rmu_sc0008278.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042900
rosa_rugosa	Rorug05G0170000
rosa_samantha	Rh2AG312700 Rh5AG258200 Rh5BG105000 Rh5BG261200 Rh5CG116800 Rh5CG293500 Rh5DG103800 Rh5DG270400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	158, 183
AciI	CCGC	6 cut(s)	153, 156, 158, 181, 191, 332
AclWI	GGATC	2 cut(s)	181, 280
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	146, 242
AfaI	GTAC	2 cut(s)	293, 443
AfiI	CCNNNNNNNGG	3 cut(s)	413, 444, 461
AgsI	TTSAA	3 cut(s)	27, 349, 361
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw26I	GTCTC	2 cut(s)	261, 307
AlwI	GGATC	2 cut(s)	181, 280
AoxI	GGCC	2 cut(s)	249, 510
ApeKI	GCWGC	2 cut(s)	211, 425
ApoI	RAATTY	2 cut(s)	146, 242
AspS9I	GGNCC	2 cut(s)	505, 510
AsuC2I	CCSGG	4 cut(s)	216, 439, 456, 509
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	223, 437
BccI	CCATC	3 cut(s)	203, 263, 379
BcnI	CCSGG	4 cut(s)	216, 439, 456, 509
BcoDI	GTCTC	2 cut(s)	261, 307
BisI	GCNGC	3 cut(s)	156, 212, 426
BlsI	GCNGC	3 cut(s)	157, 213, 427
Bme1390I	CCNGG	4 cut(s)	216, 439, 456, 509
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	2 cut(s)	505, 510
BmrFI	CCNGG	4 cut(s)	216, 439, 456, 509
BmsI	GCATC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	4 cut(s)	216, 439, 456, 509
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	4 cut(s)	156, 215, 324, 455
BsaWI	WCCGGW	2 cut(s)	406, 544
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 444, 461
Bse8I	GATNNNNATC	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	4 cut(s)	156, 215, 324, 455
BseGI	GGATG	3 cut(s)	138, 195, 390
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	3 cut(s)	413, 444, 461
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	4 cut(s)	22, 25, 341, 404
BseXI	GCAGC	2 cut(s)	223, 437
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	158, 183
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	251, 512
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	545
BsiSI	CCGG	8 cut(s)	215, 307, 371, 407, 438, 455, 508, 545
BslI	CCNNNNNNNGG	3 cut(s)	413, 444, 461
BsmAI	GTCTC	2 cut(s)	261, 307
BsnI	GGCC	2 cut(s)	251, 512
Bso31I	GGTCTC	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	186, 285
BspACI	CCGC	6 cut(s)	153, 156, 158, 181, 191, 332
BspANI	GGCC	2 cut(s)	251, 512
BspCNI	CTCAG	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	2 cut(s)	158, 183
BspPI	GGATC	2 cut(s)	181, 280
BspQI	GCTCTTC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	307
BssECI	CCNNGG	4 cut(s)	156, 215, 324, 455
BssMI	GATC	2 cut(s)	186, 285
Bst6I	CTCTTC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	138, 195, 390
BstFNI	CGCG	2 cut(s)	158, 183
BstKTI	GATC	2 cut(s)	189, 288
BstMAI	GTCTC	2 cut(s)	261, 307
BstMBI	GATC	2 cut(s)	186, 285
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 457
BstSCI	CCNGG	4 cut(s)	214, 437, 454, 507
BstUI	CGCG	2 cut(s)	158, 183
BstV1I	GCAGC	2 cut(s)	223, 437
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	251, 512
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	138, 195, 390
Cac8I	GCNNGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	505, 510
Cfr42I	CCGCGG	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	292, 442
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	9 cut(s)	43, 166, 173, 214, 237, 251, 273, 428, 512
CviKI_1	RGCY	9 cut(s)	43, 166, 173, 214, 237, 251, 273, 428, 512
CviQI	GTAC	2 cut(s)	292, 442
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	2 cut(s)	188, 287
DpnII	GATC	2 cut(s)	186, 285
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	146, 242
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 277
FatI	CATG	1 cut(s)	228
FauI	CCCGC	2 cut(s)	188, 198
Fnu4HI	GCNGC	3 cut(s)	156, 212, 426
FokI	GGATG	3 cut(s)	125, 182, 397
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	156, 212, 426
GluI	GCNGC	3 cut(s)	156, 212, 426
HaeIII	GGCC	2 cut(s)	251, 512
HapII	CCGG	8 cut(s)	215, 307, 371, 407, 438, 455, 508, 545
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	5 cut(s)	6, 254, 320, 403, 465
HpaII	CCGG	8 cut(s)	215, 307, 371, 407, 438, 455, 508, 545
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	283, 325, 342
Hpy99I	CGWCG	7 cut(s)	83, 86, 89, 92, 95, 122, 125
HpyAV	CCTTC	4 cut(s)	33, 79, 355, 516
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 457
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	186, 285
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	228, 320, 384, 420, 451, 468, 521
Lsp1109I	GCAGC	2 cut(s)	223, 437
LweI	GCATC	1 cut(s)	134
MalI	GATC	2 cut(s)	188, 287
MboI	GATC	2 cut(s)	186, 285
MboII	GAAGA	4 cut(s)	86, 173, 232, 497
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	4 cut(s)	146, 242, 344, 356
MlyI	GAGTC	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	8 cut(s)	215, 307, 371, 407, 438, 455, 508, 545
MspR9I	CCNGG	4 cut(s)	216, 439, 456, 509
MvnI	CGCG	2 cut(s)	158, 183
MwoI	GCNNNNNNNGC	2 cut(s)	434, 457
NciI	CCSGG	4 cut(s)	216, 439, 456, 509
NdeII	GATC	2 cut(s)	186, 285
NlaIII	CATG	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	4 cut(s)	78, 84, 87, 90
PfeI	GAWTC	4 cut(s)	6, 320, 403, 465
PkrI	GCNGC	3 cut(s)	157, 213, 427
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspPI	GGNCC	2 cut(s)	505, 510
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	2 cut(s)	293, 443
RsaNI	GTAC	2 cut(s)	292, 442
SacII	CCGCGG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	156
SatI	GCNGC	3 cut(s)	156, 212, 426
Sau3AI	GATC	2 cut(s)	186, 285
Sau96I	GGNCC	2 cut(s)	505, 510
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	4 cut(s)	216, 439, 456, 509
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	114, 430, 507
SfaNI	GCATC	1 cut(s)	134
Sfr303I	CCGCGG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	4 cut(s)	146, 242, 344, 356
SsiI	CCGC	6 cut(s)	153, 156, 158, 181, 191, 332
StyD4I	CCNGG	4 cut(s)	214, 437, 454, 507
TaqI	TCGA	7 cut(s)	38, 54, 72, 128, 240, 267, 541
TasI	AATT	4 cut(s)	146, 242, 344, 356
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	4 cut(s)	6, 320, 403, 465
TseI	GCWGC	2 cut(s)	211, 425
TspDTI	ATGAA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	146, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.