Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014808

Physical Location & Seq

Genomic Coordinates Reverse (-)

44395389 .. 44400779

Gene Structure 5391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGGGACATCAGGGCATATGAAAAGAAAGTAAAGAAAGCCGAGGCGAAGAAGAACAGGGACCGTGCTATTATTCTCAGGCAGAGAAGACCCACTTACAAATTAGATAAAGTCATTCTGCAGAGGTATCCAAAGTTCATTGATGCATTGAGAGATTTGGATGATTGTCTCACAATGGTTCACCTCTTTGCGGCCTTACCTGCTATAGAGGATAGAATTGACGTGAAACGCATCCATAACTGTCGGAGGATGAGCCATGAATGGCAAGCTTTCATATCTCGGACTCATAAATTGCGCAAAGTCTTTGTATCTGTTAAAGGCATATATTATCAGGCCGAGGTAAAGGGGCAATTGATCACATGGTTGACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATGTTGACTTCAATATCATGCTCAACTTTTTGAGGTTACATTTTTACCGTTATGCTCTTCTTGCTTTTGTGAATTGTCATTTATATCGTTCTGTAAATGTGAAGTATCCACCGATTCTTGATCCTCGATTGGAAGCTTTTGCAGCAGATACTTTGATGCAGGTTCTCGGTCCTCTGTGTTGGATCCTCAGGTTTCAAGTTTGCCTGGATCCGGTAAAATTGATGAGTGCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

211

Amino Acids

25.06

Weight (kDa)

9.79

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	1 - 182	2.9e-69	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014808)

Species	Orthologous Gene IDs
malus_domestica	MD10G1043900.v1.1
rosa_chinensis	RchiOBHm_Chr5g0047691 RchiOBHm_Chr5g0047861
rosa_laevigata	RLG00000002735 RLG00000009539 RLG00000029900
rosa_multiflora	Rmu_sc0003382.1_g000015 Rmu_sc0003441.1_g000032
rosa_roxburghii	Rroxscaffold_2G00123090 Rroxscaffold_7G00170290
rosa_rugosa	Rorug02G0231000
rosa_samantha	Rh1CG102100 Rh2AG287600 Rh2DG306400 Rh2DG312900 Rh5CG351500 Rh5DG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
Acc36I	ACCTGC	2 cut(s)	208, 550
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	5 cut(s)	515, 577, 590, 602, 615
AfiI	CCNNNNNNNGG	2 cut(s)	190, 610
AgsI	TTSAA	2 cut(s)	412, 596
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	2 cut(s)	269, 536
AluI	AGCT	2 cut(s)	269, 536
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	5 cut(s)	515, 577, 590, 602, 615
AoxI	GGCC	2 cut(s)	192, 333
ApeKI	GCWGC	2 cut(s)	382, 542
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	61, 569
AsuHPI	GGTGA	2 cut(s)	173, 365
AvaII	GGWCC	2 cut(s)	61, 569
AxyI	CCTNAGG	1 cut(s)	587
BamHI	GGATCC	2 cut(s)	582, 607
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	394, 554
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	2 cut(s)	138, 516
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	119, 204
BfuAI	ACCTGC	2 cut(s)	208, 550
BfuI	GTATCC	2 cut(s)	138, 516
BisI	GCNGC	3 cut(s)	192, 383, 543
BlsI	GCNGC	3 cut(s)	193, 384, 544
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	2 cut(s)	61, 569
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	61, 569
BmiI	GGNNCC	3 cut(s)	62, 584, 609
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	3 cut(s)	133, 240, 546
BpiI	GAAGAC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	42, 336
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 610
Bse21I	CCTNAGG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	42, 336
BseGI	GGATG	3 cut(s)	166, 231, 255
BseLI	CCNNNNNNNGG	2 cut(s)	190, 610
BseMII	CTCAG	2 cut(s)	91, 601
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	394, 554
BshFI	GGCC	2 cut(s)	194, 335
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	2 cut(s)	20, 74
BslI	CCNNNNNNNGG	2 cut(s)	190, 610
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	20, 74
BsnI	GGCC	2 cut(s)	194, 335
Bsp143I	GATC	4 cut(s)	354, 520, 582, 607
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	194, 335
BspCNI	CTCAG	2 cut(s)	90, 600
BspLI	GGNNCC	3 cut(s)	62, 584, 609
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	208, 550
BspPI	GGATC	5 cut(s)	515, 577, 590, 602, 615
BspQI	GCTCTTC	1 cut(s)	462
BssECI	CCNNGG	2 cut(s)	42, 336
BssMI	GATC	4 cut(s)	354, 520, 582, 607
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	65, 242, 449
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	77, 587
BstF5I	GGATG	3 cut(s)	166, 231, 255
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	4 cut(s)	357, 523, 585, 610
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	4 cut(s)	354, 520, 582, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 461, 542
BstNI	CCWGG	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	2 cut(s)	119, 204
BstV1I	GCAGC	2 cut(s)	394, 554
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	582, 607
BstYI	RGATCY	2 cut(s)	582, 607
Bsu36I	CCTNAGG	1 cut(s)	587
BsuI	GTATCC	2 cut(s)	138, 516
BsuRI	GGCC	2 cut(s)	194, 335
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	166, 231, 255
BveI	ACCTGC	2 cut(s)	208, 550
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	61, 569
CviAII	CATG	3 cut(s)	257, 360, 418
CviJI	RGCY	6 cut(s)	41, 194, 255, 269, 335, 536
CviKI_1	RGCY	6 cut(s)	41, 194, 255, 269, 335, 536
DdeI	CTNAG	2 cut(s)	77, 587
DpnI	GATC	4 cut(s)	356, 522, 584, 609
DpnII	GATC	4 cut(s)	354, 520, 582, 607
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	61, 569
Eco81I	CCTNAGG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	603
EcoT22I	ATGCAT	1 cut(s)	148
FaeI	CATG	3 cut(s)	260, 363, 421
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	2 cut(s)	20, 74
FatI	CATG	3 cut(s)	256, 359, 417
FauNDI	CATATG	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	192, 383, 543
FokI	GGATG	3 cut(s)	173, 218, 262
Fsp4HI	GCNGC	3 cut(s)	192, 383, 543
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	192, 383, 543
HaeIII	GGCC	2 cut(s)	194, 335
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	260, 363, 421
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	366, 406
HindII	GTYRAC	2 cut(s)	366, 406
HindIII	AAGCTT	2 cut(s)	267, 534
HinfI	GANTC	3 cut(s)	283, 367, 514
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	2 cut(s)	173, 365
Hpy166II	GTNNAC	3 cut(s)	181, 366, 406
Hpy188I	TCNGA	2 cut(s)	246, 282
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	3 cut(s)	181, 366, 406
HpyCH4III	ACNGT	3 cut(s)	65, 242, 449
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	121, 146, 382, 542, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 461, 542
HpyF3I	CTNAG	2 cut(s)	77, 587
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	260, 363, 421
HspAI	GCGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	354, 520, 582, 607
LguI	GCTCTTC	1 cut(s)	462
LpnPI	CCDG	9 cut(s)	43, 64, 213, 317, 545, 574, 590, 617, 624
Lsp1109I	GCAGC	2 cut(s)	394, 554
LweI	GCATC	3 cut(s)	133, 240, 546
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	4 cut(s)	356, 522, 584, 609
MboI	GATC	4 cut(s)	354, 520, 582, 607
MboII	GAAGA	4 cut(s)	61, 64, 99, 449
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	2 cut(s)	582, 607
MluCI	AATT	7 cut(s)	101, 216, 290, 350, 472, 617, 631
MlyI	GAGTC	2 cut(s)	277, 361
MmeI	TCCRAC	2 cut(s)	224, 560
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	2 cut(s)	315, 634
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	605
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	200, 461, 542
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	4 cut(s)	354, 520, 582, 607
NlaIII	CATG	3 cut(s)	260, 363, 421
NlaIV	GGNNCC	3 cut(s)	62, 584, 609
NmeAIII	GCCGAG	2 cut(s)	67, 361
NsbI	TGCGCA	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	3 cut(s)	193, 384, 544
PleI	GAGTC	2 cut(s)	277, 361
PpsI	GAGTC	2 cut(s)	277, 361
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	62, 584, 609
PspPI	GGNCC	2 cut(s)	61, 569
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	582, 607
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	315, 634
SatI	GCNGC	3 cut(s)	192, 383, 543
Sau3AI	GATC	4 cut(s)	354, 520, 582, 607
Sau96I	GGNCC	2 cut(s)	61, 569
SchI	GAGTC	2 cut(s)	277, 361
ScrFI	CCNGG	1 cut(s)	605
SfaNI	GCATC	3 cut(s)	133, 240, 546
SfcI	CTRYAG	2 cut(s)	119, 204
SinI	GGWCC	2 cut(s)	61, 569
Sse9I	AATT	7 cut(s)	101, 216, 290, 350, 472, 617, 631
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	3 cut(s)	65, 242, 449
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	526
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	7 cut(s)	101, 216, 290, 350, 472, 617, 631
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	315, 634
Tru9I	TTAA	2 cut(s)	315, 634
TseI	GCWGC	2 cut(s)	382, 542
TspDTI	ATGAA	4 cut(s)	36, 127, 262, 273
VpaK11BI	GGWCC	2 cut(s)	61, 569
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.