RchiOBHm_Chr5g0053681

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
56050189 .. 56052597
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGAGGAAGCCAACATTGCTTTCGAAAACCCACTCTTTCAGTCAAGTGTTCCCTCAGTGAAGGAGCAGCAGCAGACAACTTCCCTTCAAACGATTATGAACAATTGGAGCTGTAAGCTGCTTGATGCGGTTACGTACACCTCCTTTTTTGTGTTTGCATTTCTGGGGTATGAGAAAAGTACTGGAAAGAATCCTGCTGCCAATATCAAGGCCCTTATAGGGATTGTTCACCTGATGTGGGATGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.29

Weight (kDa)

5.64

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AfaI GTAC 2 cut(s) 137, 181
AfiI CCNNNNNNNGG 2 cut(s) 219, 238
AgsI TTSAA 1 cut(s) 89
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 111, 118
AluI AGCT 2 cut(s) 111, 118
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 67, 70, 118, 197
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 24
BbvI GCAGC 4 cut(s) 79, 82, 105, 184
BccI CCATC 1 cut(s) 236
BisI GCNGC 4 cut(s) 68, 71, 119, 198
BlsI GCNGC 4 cut(s) 69, 72, 120, 199
BmcAI AGTACT 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 238
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 15
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 219, 238
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 4 cut(s) 79, 82, 105, 184
BshFI GGCC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 219, 238
BsnI GGCC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 24
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 79, 82, 105, 184
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 136, 180
CviJI RGCY 4 cut(s) 11, 111, 118, 212
CviKI_1 RGCY 4 cut(s) 11, 111, 118, 212
CviQI GTAC 2 cut(s) 136, 180
DdeI CTNAG 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 211
FaiI YATR 3 cut(s) 98, 171, 218
Fnu4HI GCNGC 4 cut(s) 68, 71, 119, 198
Fsp4HI GCNGC 4 cut(s) 68, 71, 119, 198
GluI GCNGC 4 cut(s) 68, 71, 119, 198
HaeIII GGCC 1 cut(s) 212
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 138, 229
Hpy8I GTNNAC 2 cut(s) 138, 229
HpyAV CCTTC 2 cut(s) 55, 95
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 134
LmnI GCTCC 2 cut(s) 64, 108
LpnPI CCDG 4 cut(s) 149, 168, 207, 245
Lsp1109I GCAGC 4 cut(s) 79, 82, 105, 184
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 130
MfeI CAATTG 1 cut(s) 103
MluCI AATT 1 cut(s) 103
MnlI CCTC 2 cut(s) 64, 151
MunI CAATTG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 24
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 4 cut(s) 69, 72, 120, 199
Ppu21I YACGTR 1 cut(s) 135
PspPI GGNCC 1 cut(s) 211
RsaI GTAC 2 cut(s) 137, 181
RsaNI GTAC 2 cut(s) 136, 180
SatI GCNGC 4 cut(s) 68, 71, 119, 198
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 181
SetI ASST 5 cut(s) 113, 120, 137, 143, 234
SfaNI GCATC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 24
SgeI CNNG 7 cut(s) 57, 134, 176, 195, 206, 220, 244
SnaBI TACGTA 1 cut(s) 135
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 128
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 103
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 1 cut(s) 63
TseI GCWGC 4 cut(s) 67, 70, 118, 197
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.