Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005699

Physical Location & Seq

Genomic Coordinates Forward (+)

25968811 .. 25972068

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTGCAATCACGGGGCGAGGTCGGCGAAGAGTAGCAGCAGCAGCAACAGCAGTAGTAGTCAGCAGCAGCAGCAGGAGGAGAAGAAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTCATCTTCAGCGTCTTTGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAGCGGTGATGAGCTCGAAGGATATGGGAGCTCTGCTGGGGAATTTCTCCAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACGCTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGAAGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAGACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCCCGCTTTTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCATTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGGGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCGTAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACATAGTGCTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034285 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1901700 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

356

Amino Acids

40.27

Weight (kDa)

9.19

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HlyIII	PF03006	70 - 337	4.7e-63	Haemolysin-III related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24150 AT2G24150 AT4G30850 AT4G30850
fragaria_vesca	FvH4_4g08550 FvH4_4g08550 FvH4_4g08550 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370 FvH4_6g47370
malus_domestica	MD15G1444500.v1.1
prunus_persica	Prupe.1G101700_v2.0.a1 Prupe.1G101700_v2.0.a1
pyrus_communis	pycom08g21610
rosa_chinensis	RchiOBHm_Chr4g0405431
rosa_laevigata	RLG00000008843
rosa_multiflora	Rmu_co8267361.1_g000001 Rmu_sc0000575.1_g000016 Rmu_sc0029762.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349890
rosa_rugosa	Rorug04G0060100
rosa_samantha	Rh4AG131800 Rh4BG126700 Rh4CG139200 Rh4DG125800
rosa_wichuraiana	Rw4G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccIII	TCCGGA	2 cut(s)	394, 750
AciI	CCGC	4 cut(s)	169, 278, 590, 664
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	316, 944
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	577, 699
AdeI	CACNNNGTG	1 cut(s)	1013
AfaI	GTAC	2 cut(s)	152, 460
AfiI	CCNNNNNNNGG	2 cut(s)	750, 781
AflII	CTTAAG	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	409, 562, 684
AjnI	CCWGG	2 cut(s)	212, 323
AluBI	AGCT	6 cut(s)	288, 305, 367, 471, 522, 899
AluI	AGCT	6 cut(s)	288, 305, 367, 471, 522, 899
Alw21I	GWGCWC	3 cut(s)	290, 307, 1003
Alw26I	GTCTC	2 cut(s)	379, 737
Alw44I	GTGCAC	1 cut(s)	999
Aor13HI	TCCGGA	2 cut(s)	394, 750
AoxI	GGCC	4 cut(s)	179, 341, 473, 762
ApaLI	GTGCAC	1 cut(s)	999
ApoI	RAATTY	2 cut(s)	316, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspS9I	GGNCC	3 cut(s)	341, 762, 832
AsuC2I	CCSGG	2 cut(s)	939, 1046
AsuHPI	GGTGA	2 cut(s)	292, 769
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	1003
BanII	GRGCYC	2 cut(s)	290, 307
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	3 cut(s)	290, 307, 1003
BccI	CCATC	3 cut(s)	443, 843, 975
BceAI	ACGGC	2 cut(s)	166, 328
BciT130I	CCWGG	2 cut(s)	214, 325
BciVI	GTATCC	1 cut(s)	912
BcnI	CCSGG	2 cut(s)	939, 1046
BcoDI	GTCTC	2 cut(s)	379, 737
BfaI	CTAG	2 cut(s)	275, 1025
BfmI	CTRYAG	1 cut(s)	517
BfrI	CTTAAG	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	912
BglII	AGATCT	1 cut(s)	972
Bme1390I	CCNGG	4 cut(s)	214, 325, 939, 1046
Bme18I	GGWCC	1 cut(s)	832
BmgT120I	GGNCC	3 cut(s)	341, 762, 832
BmiI	GGNNCC	1 cut(s)	833
BmrFI	CCNGG	4 cut(s)	214, 325, 939, 1046
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	307, 535
BpuMI	CCSGG	2 cut(s)	939, 1046
BsaHI	GRCGYC	2 cut(s)	577, 699
BsaJI	CCNNGG	5 cut(s)	324, 476, 780, 891, 1045
BsaWI	WCCGGW	2 cut(s)	394, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	750, 781
Bse1I	ACTGG	1 cut(s)	162
BseAI	TCCGGA	2 cut(s)	394, 750
BseBI	CCWGG	2 cut(s)	214, 325
BseDI	CCNNGG	5 cut(s)	324, 476, 780, 891, 1045
BseGI	GGATG	2 cut(s)	108, 196
BseLI	CCNNNNNNNGG	2 cut(s)	750, 781
BseMII	CTCAG	1 cut(s)	804
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	1003
BseYI	CCCAGC	2 cut(s)	310, 899
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	4 cut(s)	181, 343, 475, 764
BsiHKAI	GWGCWC	3 cut(s)	290, 307, 1003
BsiSI	CCGG	4 cut(s)	395, 751, 939, 1045
BslFI	GGGAC	2 cut(s)	285, 845
BslI	CCNNNNNNNGG	2 cut(s)	750, 781
BsmAI	GTCTC	2 cut(s)	379, 737
BsmFI	GGGAC	2 cut(s)	285, 845
BsnI	GGCC	4 cut(s)	181, 343, 475, 764
Bsp1286I	GDGCHC	3 cut(s)	290, 307, 1003
Bsp13I	TCCGGA	2 cut(s)	394, 750
Bsp143I	GATC	1 cut(s)	972
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	4 cut(s)	169, 278, 590, 664
BspANI	GGCC	4 cut(s)	181, 343, 475, 764
BspCNI	CTCAG	1 cut(s)	803
BspEI	TCCGGA	2 cut(s)	394, 750
BspLI	GGNNCC	1 cut(s)	833
BspMAI	CTGCAG	1 cut(s)	521
BspMI	ACCTGC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	5 cut(s)	324, 476, 780, 891, 1045
BssMI	GATC	1 cut(s)	972
BssNI	GRCGYC	2 cut(s)	577, 699
BssT1I	CCWWGG	2 cut(s)	476, 780
Bst2UI	CCWGG	2 cut(s)	214, 325
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	3 cut(s)	23, 685, 776
BstACI	GRCGYC	2 cut(s)	577, 699
BstAFI	CTTAAG	1 cut(s)	490
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstC8I	GCNNGC	2 cut(s)	473, 592
BstDEI	CTNAG	2 cut(s)	511, 790
BstDSI	CCRYGG	2 cut(s)	780, 891
BstF5I	GGATG	2 cut(s)	108, 196
BstKTI	GATC	1 cut(s)	975
BstMAI	GTCTC	2 cut(s)	379, 737
BstMBI	GATC	1 cut(s)	972
BstNI	CCWGG	2 cut(s)	214, 325
BstSCI	CCNGG	4 cut(s)	212, 323, 937, 1044
BstSFI	CTRYAG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	1003
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	972
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	1 cut(s)	972
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	4 cut(s)	181, 343, 475, 764
BtgI	CCRYGG	2 cut(s)	780, 891
BtsCI	GGATG	2 cut(s)	108, 196
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	646
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	473, 592
Cfr13I	GGNCC	3 cut(s)	341, 762, 832
CseI	GACGC	6 cut(s)	193, 250, 389, 564, 566, 688
Csp6I	GTAC	2 cut(s)	151, 459
CviAII	CATG	4 cut(s)	781, 812, 980, 1033
CviQI	GTAC	2 cut(s)	151, 459
DdeI	CTNAG	2 cut(s)	511, 790
DpnI	GATC	1 cut(s)	974
DpnII	GATC	1 cut(s)	972
DraI	TTTAAA	1 cut(s)	118
DraIII	CACNNNGTG	1 cut(s)	1013
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	3 cut(s)	23, 685, 776
EarI	CTCTTC	3 cut(s)	23, 685, 776
Ecl136II	GAGCTC	2 cut(s)	288, 305
Eco130I	CCWWGG	2 cut(s)	476, 780
Eco24I	GRGCYC	2 cut(s)	290, 307
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	2 cut(s)	288, 305
Eco57I	CTGAAG	1 cut(s)	184
EcoICRI	GAGCTC	2 cut(s)	288, 305
EcoRII	CCWGG	2 cut(s)	212, 323
EcoT14I	CCWWGG	2 cut(s)	476, 780
EcoT38I	GRGCYC	2 cut(s)	290, 307
ErhI	CCWWGG	2 cut(s)	476, 780
FaeI	CATG	4 cut(s)	784, 815, 983, 1036
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	2 cut(s)	285, 845
FatI	CATG	4 cut(s)	780, 811, 979, 1032
FauI	CCCGC	2 cut(s)	583, 671
FokI	GGATG	2 cut(s)	115, 203
FriOI	GRGCYC	2 cut(s)	290, 307
FspBI	CTAG	2 cut(s)	275, 1025
GsaI	CCCAGC	2 cut(s)	314, 903
GsuI	CTGGAG	2 cut(s)	307, 535
HaeIII	GGCC	4 cut(s)	181, 343, 475, 764
HapII	CCGG	4 cut(s)	395, 751, 939, 1045
HgaI	GACGC	6 cut(s)	193, 250, 389, 564, 566, 688
Hin1I	GRCGYC	2 cut(s)	577, 699
Hin1II	CATG	4 cut(s)	784, 815, 983, 1036
HinfI	GANTC	3 cut(s)	398, 422, 730
HpaII	CCGG	4 cut(s)	395, 751, 939, 1045
HphI	GGTGA	2 cut(s)	292, 769
Hpy166II	GTNNAC	1 cut(s)	1001
Hpy188I	TCNGA	3 cut(s)	379, 421, 972
Hpy188III	TCNNGA	6 cut(s)	238, 259, 395, 552, 581, 751
Hpy8I	GTNNAC	1 cut(s)	1001
Hpy99I	CGWCG	2 cut(s)	349, 383
HpyAV	CCTTC	4 cut(s)	133, 286, 628, 652
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	7 cut(s)	6, 519, 651, 740, 956, 1001, 1007
HpyF3I	CTNAG	2 cut(s)	511, 790
Hsp92I	GRCGYC	2 cut(s)	577, 699
Hsp92II	CATG	4 cut(s)	784, 815, 983, 1036
Kpn2I	TCCGGA	2 cut(s)	394, 750
Kzo9I	GATC	1 cut(s)	972
LmnI	GCTCC	6 cut(s)	302, 397, 527, 620, 631, 896
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	275, 1025
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	1 cut(s)	974
MboI	GATC	1 cut(s)	972
MflI	RGATCY	1 cut(s)	972
MhlI	GDGCHC	3 cut(s)	290, 307, 1003
MluCI	AATT	4 cut(s)	316, 462, 846, 944
MlyI	GAGTC	2 cut(s)	431, 739
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	7 cut(s)	12, 70, 93, 239, 536, 545, 785
MroI	TCCGGA	2 cut(s)	394, 750
MseI	TTAA	5 cut(s)	111, 117, 185, 369, 491
MspA1I	CMGCKG	1 cut(s)	171
MspCI	CTTAAG	1 cut(s)	490
MspI	CCGG	4 cut(s)	395, 751, 939, 1045
MspR9I	CCNGG	4 cut(s)	214, 325, 939, 1046
MvaI	CCWGG	2 cut(s)	214, 325
NciI	CCSGG	2 cut(s)	939, 1046
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	1 cut(s)	972
NlaIII	CATG	4 cut(s)	784, 815, 983, 1036
NlaIV	GGNNCC	1 cut(s)	833
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	398
PleI	GAGTC	2 cut(s)	430, 738
PpsI	GAGTC	2 cut(s)	430, 738
Psp124BI	GAGCTC	2 cut(s)	290, 307
Psp6I	CCWGG	2 cut(s)	212, 323
PspFI	CCCAGC	2 cut(s)	310, 899
PspGI	CCWGG	2 cut(s)	212, 323
PspN4I	GGNNCC	1 cut(s)	833
PspPI	GGNCC	3 cut(s)	341, 762, 832
PstI	CTGCAG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	972
RsaI	GTAC	2 cut(s)	152, 460
RsaNI	GTAC	2 cut(s)	151, 459
SacI	GAGCTC	2 cut(s)	290, 307
SaqAI	TTAA	5 cut(s)	111, 117, 185, 369, 491
Sau3AI	GATC	1 cut(s)	972
Sau96I	GGNCC	3 cut(s)	341, 762, 832
SchI	GAGTC	2 cut(s)	431, 739
ScrFI	CCNGG	4 cut(s)	214, 325, 939, 1046
SduI	GDGCHC	3 cut(s)	290, 307, 1003
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	832
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	4 cut(s)	316, 462, 846, 944
SsiI	CCGC	4 cut(s)	169, 278, 590, 664
SspMI	CTAG	2 cut(s)	275, 1025
SstI	GAGCTC	2 cut(s)	290, 307
StyD4I	CCNGG	4 cut(s)	212, 323, 937, 1044
StyI	CCWWGG	2 cut(s)	476, 780
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	290, 347
TasI	AATT	4 cut(s)	316, 462, 846, 944
TatI	WGTACW	2 cut(s)	150, 458
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	5 cut(s)	111, 117, 185, 369, 491
Tru9I	TTAA	5 cut(s)	111, 117, 185, 369, 491
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	6 cut(s)	152, 368, 374, 418, 800, 879
TspRI	CASTG	1 cut(s)	653
Vha464I	CTTAAG	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	999
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	2 cut(s)	316, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XspI	CTAG	2 cut(s)	275, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.