Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

52264467 .. 52265526

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTGGACAAAAAGCAATAGAGACGGGGAGTATTGTAACGGTTGACTACAAGTTTTTTTTGCTTAATCGGCAAAAGGAGAAGAAGACCTACCTGGTTCTTGAAGATGCCAATAAAAAGGAGAAGAAGTATTGTTTTTATAGGACAATAGTTGGTGGTTTGGCTGGATTTGATCGATTTATCTCTATTGAAGATTTTACTGATGCCTTGAATGGTTATCTCATTGATGATACATGTGAGTTTGGAGCGGATGTATTTGTATCTAAATCGAGAAGAAAAGGCAAAGGAGAGCGTGTTTCAATGAATCTCAATACCATTATGTACAAACACACTTGGAAAGTTACTGATTTTTCGAAGTTTGACACACCATCTTGTTCACAACCATTCACCGCTGCAGATCAAAAATATTGCACATGGAAATTGGTGCTCTATCCCAGGGGTCTAGGCATAGGAAAAGGTAGTCATCTTTCTGTTTTTTTGCATGTATATGAACCGGAAAACCAGCTTCCTATTGGATCTAAGATACTTGCGGAGTATACCATACGCATTATGGATCAAATCCATGGCAAGCATCGTTCTATTAAAGGTAAAAAGTGGTTCAGTGCCCCGTTTTGGAGTTGGGGTCACTATCAGTTCATTACACAAGAAGCCAACGCGGCGTGCCTTAAGAAAGATAGTTGTATATTGGAGGTCGAAATCTGTATCTTAGGACTTTCCATTCCTGGAATTTCTACGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

246

Amino Acids

28.0

Weight (kDa)

9.02

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	10 - 85	6e-08	MATH domain
MATH_2	PF22486	109 - 233	5.3e-22	MATH domain
MATH	PF00917	115 - 235	7.1e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	1 cut(s)	656
AciI	CCGC	4 cut(s)	248, 390, 530, 656
AclWI	GGATC	2 cut(s)	523, 561
AcsI	RAATTY	1 cut(s)	726
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	612
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	104, 191, 211, 300
AjnI	CCWGG	3 cut(s)	93, 434, 721
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	523, 561
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	726
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	95, 436, 723
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	393, 657
BlsI	GCNGC	2 cut(s)	394, 658
Bme1390I	CCNGG	3 cut(s)	95, 436, 723
BmrFI	CCNGG	3 cut(s)	95, 436, 723
BmsI	GCATC	3 cut(s)	97, 193, 580
BpiI	GAAGAC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	434, 435, 562
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 143, 237, 267, 279, 309, 607, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
BseBI	CCWGG	3 cut(s)	95, 436, 723
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	434, 435, 562
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	656
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	429, 607
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	172, 397, 515, 553
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	4 cut(s)	248, 390, 530, 656
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	656
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	523, 561
BspT104I	TTCGAA	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	434, 435, 562
BssMI	GATC	4 cut(s)	172, 397, 515, 553
BssNAI	GTATAC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	95, 436, 723
Bst4CI	ACNGT	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	569, 661
BstDEI	CTNAG	2 cut(s)	519, 706
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	4 cut(s)	175, 400, 518, 556
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	172, 397, 515, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 656
BstNI	CCWGG	3 cut(s)	95, 436, 723
BstNSI	RCATGY	2 cut(s)	237, 485
BstSCI	CCNGG	3 cut(s)	93, 434, 721
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BstZ17I	GTATAC	1 cut(s)	537
Bsu15I	ATCGAT	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	569, 661
ClaI	ATCGAT	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	234, 414, 482, 563
CviJI	RGCY	3 cut(s)	164, 505, 650
CviKI_1	RGCY	3 cut(s)	164, 505, 650
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	519, 706
DpnI	GATC	4 cut(s)	174, 399, 517, 555
DpnII	GATC	4 cut(s)	172, 397, 515, 553
Eco130I	CCWWGG	1 cut(s)	562
EcoRII	CCWGG	3 cut(s)	93, 434, 721
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	237, 417, 485, 566
FatI	CATG	4 cut(s)	233, 413, 481, 562
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	393, 657
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	393, 657
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	2 cut(s)	393, 657
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	4 cut(s)	237, 417, 485, 566
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	4 cut(s)	8, 46, 377, 537
Hpy188III	TCNNGA	2 cut(s)	101, 270
Hpy8I	GTNNAC	4 cut(s)	8, 46, 377, 537
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	395, 411, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 656
HpyF3I	CTNAG	2 cut(s)	519, 706
Hsp92II	CATG	4 cut(s)	237, 417, 485, 566
Kzo9I	GATC	4 cut(s)	172, 397, 515, 553
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	9 cut(s)	80, 107, 150, 421, 448, 507, 515, 708, 735
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	3 cut(s)	97, 193, 580
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	3 cut(s)	37, 340, 623
MalI	GATC	4 cut(s)	174, 399, 517, 555
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	4 cut(s)	172, 397, 515, 553
MboII	GAAGA	6 cut(s)	94, 97, 116, 136, 203, 285
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	429, 607
MluCI	AATT	2 cut(s)	419, 726
MnlI	CCTC	1 cut(s)	682
MseI	TTAA	3 cut(s)	66, 582, 666
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	392
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	3 cut(s)	95, 436, 723
MvaI	CCWGG	3 cut(s)	95, 436, 723
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	70, 656
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	4 cut(s)	172, 397, 515, 553
NlaIII	CATG	4 cut(s)	237, 417, 485, 566
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	2 cut(s)	237, 485
NspV	TTCGAA	1 cut(s)	353
PasI	CCCWGGG	1 cut(s)	435
PciI	ACATGT	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	394, 658
PscI	ACATGT	1 cut(s)	233
Psp6I	CCWGG	3 cut(s)	93, 434, 721
PspGI	CCWGG	3 cut(s)	93, 434, 721
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	66, 582, 666
SatI	GCNGC	2 cut(s)	393, 657
Sau3AI	GATC	4 cut(s)	172, 397, 515, 553
ScrFI	CCNGG	3 cut(s)	95, 436, 723
SduI	GDGCHC	2 cut(s)	429, 607
SetI	ASST	6 cut(s)	92, 96, 460, 507, 589, 693
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	3 cut(s)	97, 193, 580
SfcI	CTRYAG	1 cut(s)	393
SfuI	TTCGAA	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	2 cut(s)	419, 726
SsiI	CCGC	4 cut(s)	248, 390, 530, 656
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	93, 434, 721
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	175, 269, 353, 693
TasI	AATT	2 cut(s)	419, 726
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	3 cut(s)	66, 582, 666
Tru9I	TTAA	3 cut(s)	66, 582, 666
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	317, 504, 625
TspRI	CASTG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	665
XapI	RAATTY	1 cut(s)	726
XceI	RCATGY	2 cut(s)	237, 485
XcmI	CCANNNNNNNNNTGG	2 cut(s)	509, 547
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.