RchiOBHm_Chr4g0434211

Ubiquitin-2 like Rad60 SUMO-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014096
Physical Location & Seq
Reverse (-)
58057297 .. 58060211
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGCGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAACGGTCGATGACAGTGTGAAGGTTACAGTTATTGAGGATGACGACGAGGACTGGTTGCTTCCTCCGCCCAAAGTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAACTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACAAGAACTTCTTAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCGCCACATCCAAAGCCCCAAGTTGAAAGGAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

227

Amino Acids

25.38

Weight (kDa)

4.54

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 144 - 211 1.4e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68185 AT1G68185 AT1G68185
fragaria_vesca FvH4_4g26560
malus_domestica MD13G1034500.v1.1 MD16G1036000.v1.1
prunus_persica Prupe.1G318000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434211
rosa_laevigata RLG00000006692
rosa_multiflora Rmu_sc0000459.1_g000010
rosa_roxburghii Rroxscaffold_5G00375590
rosa_rugosa Rorug04G0275500
rosa_samantha Rh4AG330100 Rh4BG337700 Rh4CG353100 Rh4DG333700
rosa_wichuraiana Rw4G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 499
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 3 cut(s) 46, 224, 499
AcyI GRCGYC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 331, 610
AgsI TTSAA 6 cut(s) 158, 419, 446, 508, 645, 666
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 3 cut(s) 302, 329, 527
AluI AGCT 3 cut(s) 302, 329, 527
Alw26I GTCTC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 52, 392
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 322, 578
AsuHPI GGTGA 2 cut(s) 260, 369
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 2 cut(s) 322, 578
BbvI GCAGC 2 cut(s) 64, 404
BccI CCATC 4 cut(s) 266, 449, 557, 601
BceAI ACGGC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 4 cut(s) 46, 53, 393, 500
BlsI GCNGC 4 cut(s) 47, 54, 394, 501
Bme18I GGWCC 2 cut(s) 322, 578
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 322, 578
BmsI GCATC 3 cut(s) 305, 373, 574
Bpu14I TTCGAA 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 669
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 610
Bse1I ACTGG 2 cut(s) 215, 297
BseAI TCCGGA 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BseLI CCNNNNNNNGG 2 cut(s) 331, 610
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 215, 297
BseRI GAGGAG 2 cut(s) 105, 350
BseXI GCAGC 2 cut(s) 64, 404
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 331, 610
BsmAI GTCTC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 1 cut(s) 624
BspACI CCGC 3 cut(s) 46, 224, 499
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 499
BsrI ACTGG 2 cut(s) 215, 297
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 1 cut(s) 624
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 669
Bst4CI ACNGT 3 cut(s) 163, 173, 187
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 303, 359, 528
BstF5I GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 1 cut(s) 627
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 624
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 64, 404
BstXI CCANNNNNNTGG 1 cut(s) 244
BtsCI GGATG 6 cut(s) 202, 400, 460, 490, 612, 619
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 322, 578
CseI GACGC 1 cut(s) 93
CviAII CATG 3 cut(s) 481, 622, 635
DdeI CTNAG 3 cut(s) 303, 359, 528
DpnI GATC 1 cut(s) 626
DpnII GATC 1 cut(s) 624
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 122
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 322, 578
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 484, 625, 638
FaiI YATR 7 cut(s) 437, 476, 478, 482, 516, 623, 636
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 3 cut(s) 480, 621, 634
Fnu4HI GCNGC 4 cut(s) 46, 53, 393, 500
FokI GGATG 6 cut(s) 209, 387, 467, 497, 619, 626
Fsp4HI GCNGC 4 cut(s) 46, 53, 393, 500
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 46, 53, 393, 500
HaeII RGCGCY 1 cut(s) 398
HapII CCGG 1 cut(s) 604
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 484, 625, 638
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 6 cut(s) 145, 254, 305, 338, 459, 596
HpaII CCGG 1 cut(s) 604
HphI GGTGA 2 cut(s) 260, 369
Hpy188I TCNGA 3 cut(s) 120, 326, 543
Hpy188III TCNNGA 3 cut(s) 446, 581, 604
HpyAV CCTTC 2 cut(s) 130, 172
HpyCH4III ACNGT 3 cut(s) 163, 173, 187
HpyCH4V TGCA 3 cut(s) 52, 518, 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
HpyF3I CTNAG 3 cut(s) 303, 359, 528
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 484, 625, 638
HspAI GCGC 1 cut(s) 395
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 1 cut(s) 624
LpnPI CCDG 7 cut(s) 162, 196, 278, 393, 594, 606, 617
Lsp1109I GCAGC 2 cut(s) 64, 404
LweI GCATC 3 cut(s) 305, 373, 574
MaeIII GTNAC 3 cut(s) 181, 232, 276
MalI GATC 1 cut(s) 626
MbiI CCGCTC 1 cut(s) 499
MboI GATC 1 cut(s) 624
MboII GAAGA 5 cut(s) 29, 139, 145, 366, 654
MluCI AATT 2 cut(s) 242, 467
MlyI GAGTC 3 cut(s) 314, 347, 468
MroI TCCGGA 1 cut(s) 603
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 223, 308, 392, 524
NdeII GATC 1 cut(s) 624
NlaIII CATG 3 cut(s) 484, 625, 638
NspV TTCGAA 1 cut(s) 143
PcsI WCGNNNNNNNCGW 6 cut(s) 81, 84, 87, 90, 93, 96
PfeI GAWTC 3 cut(s) 145, 254, 596
PkrI GCNGC 4 cut(s) 47, 54, 394, 501
PleI GAGTC 3 cut(s) 313, 346, 467
PpsI GAGTC 3 cut(s) 313, 346, 467
PspPI GGNCC 2 cut(s) 322, 578
PvuII CAGCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 4 cut(s) 46, 53, 393, 500
Sau3AI GATC 1 cut(s) 624
Sau96I GGNCC 2 cut(s) 322, 578
SchI GAGTC 3 cut(s) 314, 347, 468
SetI ASST 8 cut(s) 183, 278, 304, 331, 529, 580, 595, 658
SfaNI GCATC 3 cut(s) 305, 373, 574
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 2 cut(s) 322, 578
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 2 cut(s) 242, 467
SsiI CCGC 3 cut(s) 46, 224, 499
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 163, 173, 187
TaqI TCGA 7 cut(s) 24, 36, 75, 143, 165, 627, 679
TasI AATT 2 cut(s) 242, 467
TauI GCSGC 2 cut(s) 48, 502
TfiI GAWTC 3 cut(s) 145, 254, 596
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 52, 392
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 322, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.