Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Reverse (-)

62682528 .. 62686467

Gene Structure 3940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGACAGTGCCTTGGTTGTATCCAGGTGGACCAGTCTACTGTTGCAATAAGAGAAACTTTTGGGAAGTTTGATGATGTGCTCGAACCTGGTTGTCATTGTTTGCCTTGGTGTTTGGGTAGCGCAGTAGCTGGTCATCTCTCTCTACGAGTGCAGCAATTGGATGTTCGCTGTGAAACAAAGACCAAGGATAACGTTTTTGTTACTGTGGTTGCTTCTATTCAATACCGAGCTTTAGCTGACAAAGCTTCAGATGCCTTCTACAAGCTCAGCAATACCAGGGGGCAGATCCAGTCTTATGTCTTTGATGTTATTAGGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGATAGTACAAACATTGATTGTGGATATCGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGCTGCATCTGAGAGAGCTGAAGGAGATAAGATACTACAGATTAAGCGAGCTGAGGGAGAGGCAGAGTCCAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGACGGGCTGAGAGACAGCGTGCTGGCTTTCTCTGAGAATGTACCTGGGACATCATCAAAGGATGTCATGGATATGGTTCTGGTGACCCAGTACTTCGATACAATGAAAGAGATCGGTGCATCTTCAAAGTCCAATTCGGTTTTCATCCCACATGGACCTGGTGCTGTGAAAGACATTGCTTCACAGATAAGAGATGGTCTCCTTCAAGGAAATTCAACTCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

286

Amino Acids

31.4

Weight (kDa)

5.35

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 182	4.6e-28	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	2 cut(s)	283, 345
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	2 cut(s)	234, 555
AfaI	GTAC	3 cut(s)	432, 675, 725
AgsI	TTSAA	6 cut(s)	224, 356, 398, 759, 839, 849
AjnI	CCWGG	6 cut(s)	24, 88, 278, 621, 676, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	9 cut(s)	131, 233, 239, 248, 268, 380, 500, 533, 566
AluI	AGCT	9 cut(s)	131, 233, 239, 248, 268, 380, 500, 533, 566
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	639, 836
AlwI	GGATC	2 cut(s)	283, 345
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
ApoI	RAATTY	1 cut(s)	844
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	125, 621
AspS9I	GGNCC	2 cut(s)	31, 788
AsuHPI	GGTGA	2 cut(s)	727, 845
AvaII	GGWCC	2 cut(s)	31, 788
Bbv12I	GWGCWC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BccI	CCATC	1 cut(s)	821
BciT130I	CCWGG	6 cut(s)	26, 90, 280, 623, 678, 792
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	639, 836
BfaI	CTAG	2 cut(s)	341, 504
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	6 cut(s)	26, 90, 280, 623, 678, 792
Bme18I	GGWCC	2 cut(s)	31, 788
BmgT120I	GGNCC	2 cut(s)	31, 788
BmrFI	CCNGG	6 cut(s)	26, 90, 280, 623, 678, 792
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	3 cut(s)	244, 530, 761
BmuI	ACTGGG	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	5 cut(s)	13, 107, 186, 279, 677
Bse1I	ACTGG	4 cut(s)	34, 292, 721, 856
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	6 cut(s)	26, 90, 280, 623, 678, 792
BseDI	CCNNGG	5 cut(s)	13, 107, 186, 279, 677
BseGI	GGATG	4 cut(s)	169, 513, 700, 777
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	5 cut(s)	283, 516, 558, 632, 657
BseNI	ACTGG	4 cut(s)	34, 292, 721, 856
BseXI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	18, 694
BsmAI	GTCTC	2 cut(s)	639, 836
BsmFI	GGGAC	2 cut(s)	18, 694
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	288, 337, 744
Bsp1720I	GCTNAGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	5 cut(s)	282, 517, 559, 633, 658
BspPI	GGATC	2 cut(s)	283, 345
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	4 cut(s)	34, 292, 721, 856
BssECI	CCNNGG	5 cut(s)	13, 107, 186, 279, 677
BssMI	GATC	3 cut(s)	288, 337, 744
BssT1I	CCWWGG	3 cut(s)	13, 107, 186
Bst2UI	CCWGG	6 cut(s)	26, 90, 280, 623, 678, 792
Bst4CI	ACNGT	3 cut(s)	9, 43, 208
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	564, 653, 657
BstDEI	CTNAG	5 cut(s)	269, 525, 567, 641, 666
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	4 cut(s)	169, 513, 700, 777
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	2 cut(s)	125, 621
BstKTI	GATC	3 cut(s)	291, 340, 747
BstMAI	GTCTC	2 cut(s)	639, 836
BstMBI	GATC	3 cut(s)	288, 337, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstNI	CCWGG	6 cut(s)	26, 90, 280, 623, 678, 792
BstNSI	RCATGY	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	6 cut(s)	24, 88, 278, 621, 676, 790
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BstX2I	RGATCY	2 cut(s)	288, 337
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	2 cut(s)	288, 337
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	4 cut(s)	169, 513, 700, 777
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	564, 653, 657
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	2 cut(s)	125, 621
Cfr13I	GGNCC	2 cut(s)	31, 788
CsiI	ACCWGGT	2 cut(s)	88, 790
Csp6I	GTAC	3 cut(s)	431, 674, 724
CviAII	CATG	4 cut(s)	406, 467, 700, 785
CviQI	GTAC	3 cut(s)	431, 674, 724
DdeI	CTNAG	5 cut(s)	269, 525, 567, 641, 666
DpnI	GATC	3 cut(s)	290, 339, 746
DpnII	GATC	3 cut(s)	288, 337, 744
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	3 cut(s)	13, 107, 186
Eco31I	GGTCTC	1 cut(s)	836
Eco32I	GATATC	2 cut(s)	370, 451
Eco47I	GGWCC	2 cut(s)	31, 788
Eco57I	CTGAAG	2 cut(s)	234, 555
Eco91I	GGTNACC	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	6 cut(s)	24, 88, 278, 621, 676, 790
EcoRV	GATATC	2 cut(s)	370, 451
EcoT14I	CCWWGG	3 cut(s)	13, 107, 186
ErhI	CCWWGG	3 cut(s)	13, 107, 186
FaeI	CATG	4 cut(s)	409, 470, 703, 788
FaiI	YATR	8 cut(s)	300, 407, 417, 468, 608, 701, 707, 786
FalI	AAGNNNNNCTT	4 cut(s)	43, 75, 378, 410
FaqI	GGGAC	2 cut(s)	18, 694
FatI	CATG	4 cut(s)	405, 466, 699, 784
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FokI	GGATG	4 cut(s)	176, 520, 707, 764
Fsp4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FspBI	CTAG	2 cut(s)	341, 504
GlaI	GCGC	2 cut(s)	124, 620
GluI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	1 cut(s)	404
HhaI	GCGC	2 cut(s)	125, 621
Hin1II	CATG	4 cut(s)	409, 470, 703, 788
Hin6I	GCGC	2 cut(s)	123, 619
HinP1I	GCGC	2 cut(s)	123, 619
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	344, 581
HphI	GGTGA	2 cut(s)	727, 845
Hpy166II	GTNNAC	3 cut(s)	31, 39, 634
Hpy188I	TCNGA	3 cut(s)	253, 526, 667
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	3 cut(s)	31, 39, 634
HpyAV	CCTTC	3 cut(s)	268, 530, 845
HpyCH4III	ACNGT	3 cut(s)	9, 43, 208
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	47, 154, 497, 521, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpyF3I	CTNAG	5 cut(s)	269, 525, 567, 641, 666
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	409, 470, 703, 788
HspAI	GCGC	2 cut(s)	123, 619
Kzo9I	GATC	3 cut(s)	288, 337, 744
Lsp1109I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
LweI	GCATC	3 cut(s)	244, 530, 761
MabI	ACCWGGT	2 cut(s)	88, 790
MaeI	CTAG	2 cut(s)	341, 504
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	202, 408, 715
MalI	GATC	3 cut(s)	290, 339, 746
MboI	GATC	3 cut(s)	288, 337, 744
MboII	GAAGA	5 cut(s)	373, 398, 401, 484, 747
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	288, 337
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	158, 766, 844
MlyI	GAGTC	2 cut(s)	338, 590
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	3 cut(s)	504, 562, 568
MseI	TTAA	2 cut(s)	492, 558
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	500
MspR9I	CCNGG	6 cut(s)	26, 90, 280, 623, 678, 792
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	6 cut(s)	26, 90, 280, 623, 678, 792
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NdeII	GATC	3 cut(s)	288, 337, 744
NlaIII	CATG	4 cut(s)	409, 470, 703, 788
NmuCI	GTSAC	2 cut(s)	408, 715
NspI	RCATGY	1 cut(s)	470
PkrI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
PleI	GAGTC	2 cut(s)	338, 589
PpsI	GAGTC	2 cut(s)	338, 589
PshBI	ATTAAT	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	6 cut(s)	24, 88, 278, 621, 676, 790
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	6 cut(s)	24, 88, 278, 621, 676, 790
PspPI	GGNCC	2 cut(s)	31, 788
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	288, 337
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	432, 675, 725
RsaNI	GTAC	3 cut(s)	431, 674, 724
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	2 cut(s)	492, 558
SatI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
Sau3AI	GATC	3 cut(s)	288, 337, 744
Sau96I	GGNCC	2 cut(s)	31, 788
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	2 cut(s)	338, 590
ScrFI	CCNGG	6 cut(s)	26, 90, 280, 623, 678, 792
SduI	GDGCHC	1 cut(s)	84
SexAI	ACCWGGT	2 cut(s)	88, 790
SfaNI	GCATC	3 cut(s)	244, 530, 761
SfcI	CTRYAG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	31, 788
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	3 cut(s)	158, 766, 844
SspMI	CTAG	2 cut(s)	341, 504
StyD4I	CCNGG	6 cut(s)	24, 88, 278, 621, 676, 790
StyI	CCWWGG	3 cut(s)	13, 107, 186
TaaI	ACNGT	3 cut(s)	9, 43, 208
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	84, 453, 729
TasI	AATT	3 cut(s)	158, 766, 844
TatI	WGTACW	2 cut(s)	430, 723
Tru1I	TTAA	2 cut(s)	492, 558
Tru9I	TTAA	2 cut(s)	492, 558
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	2 cut(s)	408, 715
TseI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
Tsp45I	GTSAC	2 cut(s)	408, 715
TspDTI	ATGAA	3 cut(s)	497, 752, 766
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	31, 788
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	844
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	2 cut(s)	341, 504
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.