RchiOBHm_Chr3g0447391

Splicing factor U2AF-associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
107582 .. 116129
8548 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGGCGAGGTTCGCAGGGAACGGCTCGGAGAATCTCCGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAAACGGCAGCAATCAGGTTCCGAACAGACAATATTGGAGATGGAAGCCAAAACCGAAATTTTGAGTGAAGTAGGATGGTTTATTCTCGGTGAAAATCAGCAACATCTTGGTCCCTACACATTTTCGGAGTTGCGCGAGCATTTCTTAAATGGCTACCTCACCCACTCTACGCTGGTCTGGTCACAAGGAAGAAGCGAATGGCAGCCACTGTCCTCAATTCCTAATTTGGTCACCCAACTTACTTGCCATGACCCAGTGCCCCCCAGTGGTAATGATGATGACTTTGAGAAATGGCAGAAGCAGATTTCTAAGGCAGAAGCAGATAGTGAAAGACCTTCAACACCGCCAGAGGGCGAGGAAGAGTTCATCGATGATGATGGCACTCAATATAAGTGGGATCGGGGTCTTAGGGCTTGGGTTCCTCAGGATAGCATGTTTGGGGTAGAGGAGATGACTTTCTTGCAAGAAGAGGAAGTCTTCATGAATGCCAAACTTTCTGACGACTCTTCAAGGGAGGAGGTTGATGCAACTGGAATTTTTTCTGATCCTTCTAAAGAAGAAGACACTGTTGTTAACTGTGAGGTAGAACAAGGGAATCCAAATTCAAAGAGAAAACTGTCGGATACGGAAGATGTGAAAAAGGAAGCTAATAAACCTCCTGATAGTTGGTTTGAGCTAAAGGTCAATTCACATGTTTATGTGACTGGATTACCCGATGATGTTACAGTTGACGAAGTGGTGGAGGTGTTTTCCAAGTGTGGGATAATAAAAGAGGATCCTGAATCAAAAAAGCCTCGTGTGAAGCTGTATACTGATAAAGCGACTGGAAAGAAAAAGGGAGATGCACTTGTTACATATTTGAAGGAGCCCTCAGTCGATTTGGCTCTCAAAATTTTGGATGGAACACCTCTGCGTCTTGGTAGCAAGGTTCTCATGTCAGTCACCCAAGCTAAGTTTGAGCAGAAAGGGGATAGATTTATTGCCAAACAAGCAGACAACAAGAGGAAAAAAAAACTGAAGAAGGTGGAAGAGAAGATGCTTGGCTGGGGTGGTCGTGATGATGCAAAACTGTTGATTCCAGCTACTGTTCTTCTTCGTTACATGTTCACTACTGCTGAAATGAGCGCAGATGAAAATTTACGTGCAGAATTGCAGGCAGATGTTGAGGAGGAATGTCAGAAGCTTGGTCCCGTGGACTCAGTCAAGGTTTGTGAGAATCATCCCCAGGGTGTTGTTTTGGTAAGATTCAAAGATAGGAAGGATGCTCAAAAGTGCATAGAGTTGATGAATGGAAGATGGTTTGGTGGTAGGCAGATACATGCAAGTGAGGATGATGGTTTAATTAACCATGCATTGGTCCGGAATCTGGATGATGATGCTGAACGCTTAGAGCAGTTTGCTTCCGAACTTGATGTATGA

Protein Analysis

496

Amino Acids

56.23

Weight (kDa)

4.7

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GYF_2 PF14237 50 - 100 1.9e-16 GYF domain 2
RRM_1 PF00076 256 - 328 2.2e-07 RNA recognition motif
RRM_1 PF00076 410 - 464 3.5e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1426
AccI GTMKAC 1 cut(s) 881
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 1431
AciI CCGC 1 cut(s) 416
AclWI GGATC 4 cut(s) 477, 611, 842, 855
AcsI RAATTY 5 cut(s) 129, 606, 673, 963, 1207
AcuI CTGAAG 1 cut(s) 1109
AfiI CCNNNNNNNGG 5 cut(s) 338, 422, 831, 1426, 1438
AflIII ACRYGT 2 cut(s) 763, 1173
AgsI TTSAA 5 cut(s) 411, 582, 678, 934, 1321
AjnI CCWGG 1 cut(s) 1296
AluBI AGCT 6 cut(s) 719, 748, 877, 1022, 1154, 1255
AluI AGCT 6 cut(s) 719, 748, 877, 1022, 1154, 1255
AlwI GGATC 4 cut(s) 477, 611, 842, 855
AlwNI CAGNNNCTG 2 cut(s) 280, 1157
Aor13HI TCCGGA 1 cut(s) 1431
ApeKI GCWGC 2 cut(s) 79, 274
ApoI RAATTY 5 cut(s) 129, 606, 673, 963, 1207
Asp700I GAANNNNTTC 1 cut(s) 610
AspLEI GCGC 2 cut(s) 207, 1199
AspS9I GGNCC 3 cut(s) 182, 1259, 1429
AsuHPI GGTGA 4 cut(s) 173, 223, 295, 1006
AvaII GGWCC 3 cut(s) 182, 1259, 1429
AxyI CCTNAGG 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 333
BamHI GGATCC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 942
BauI CACGAG 1 cut(s) 867
BbsI GAAGAC 2 cut(s) 541, 639
BbvI GCAGC 2 cut(s) 91, 286
BccI CCATC 6 cut(s) 106, 141, 443, 965, 1362, 1400
BceAI ACGGC 2 cut(s) 37, 92
BciT130I CCWGG 1 cut(s) 1298
BciVI GTATCC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 688
BisI GCNGC 2 cut(s) 80, 275
BlsI GCNGC 2 cut(s) 81, 276
Bme1390I CCNGG 1 cut(s) 1298
Bme18I GGWCC 3 cut(s) 182, 1259, 1429
BmgT120I GGNCC 3 cut(s) 182, 1259, 1429
BmiI GGNNCC 6 cut(s) 91, 184, 492, 849, 939, 1261
BmrFI CCNGG 1 cut(s) 1298
BmrI ACTGGG 2 cut(s) 320, 330
BmsI GCATC 6 cut(s) 586, 904, 1098, 1123, 1324, 1438
BmuI ACTGGG 2 cut(s) 320, 330
BpiI GAAGAC 2 cut(s) 541, 639
Bsa29I ATCGAT 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 1214
BsaJI CCNNGG 3 cut(s) 1263, 1296, 1297
BsaWI WCCGGW 1 cut(s) 1431
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 422, 831, 1426, 1438
Bse1I ACTGG 5 cut(s) 326, 336, 607, 781, 901
Bse21I CCTNAGG 1 cut(s) 495
BseAI TCCGGA 1 cut(s) 1431
BseBI CCWGG 1 cut(s) 1298
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 1263, 1296, 1297
BseGI GGATG 6 cut(s) 152, 976, 1291, 1339, 1408, 1447
BseLI CCNNNNNNNGG 5 cut(s) 338, 422, 831, 1426, 1438
BseMII CTCAG 3 cut(s) 509, 957, 1284
BseNI ACTGG 5 cut(s) 326, 336, 607, 781, 901
BseRI GAGGAG 3 cut(s) 533, 602, 1253
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 91, 286
BseYI CCCAGC 1 cut(s) 1116
BsgI GTGCAG 1 cut(s) 1236
Bsh1236I CGCG 1 cut(s) 207
BshVI ATCGAT 1 cut(s) 441
BsiSI CCGG 1 cut(s) 1432
BslFI GGGAC 2 cut(s) 168, 1245
BslI CCNNNNNNNGG 5 cut(s) 338, 422, 831, 1426, 1438
BsmFI GGGAC 2 cut(s) 168, 1245
BsmI GAATGC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 333, 942
Bsp13I TCCGGA 1 cut(s) 1431
Bsp143I GATC 3 cut(s) 469, 616, 847
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 3 cut(s) 508, 956, 1283
BspDI ATCGAT 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 1431
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 6 cut(s) 91, 184, 492, 849, 939, 1261
BspPI GGATC 4 cut(s) 477, 611, 842, 855
BsrI ACTGG 5 cut(s) 326, 336, 607, 781, 901
BssECI CCNNGG 3 cut(s) 1263, 1296, 1297
BssMI GATC 3 cut(s) 469, 616, 847
BssNAI GTATAC 1 cut(s) 882
BssSI CACGAG 1 cut(s) 867
Bst1107I GTATAC 1 cut(s) 882
Bst2BI CACGAG 1 cut(s) 867
Bst2UI CCWGG 1 cut(s) 1298
Bst4CI ACNGT 7 cut(s) 282, 640, 650, 690, 799, 1143, 1159
Bst6I CTCTTC 4 cut(s) 426, 534, 583, 1095
BstBAI YACGTR 1 cut(s) 1214
BstC8I GCNNGC 2 cut(s) 209, 1227
BstDEI CTNAG 7 cut(s) 381, 479, 495, 943, 1023, 1270, 1459
BstDSI CCRYGG 1 cut(s) 1263
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 6 cut(s) 152, 976, 1291, 1339, 1408, 1447
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 207, 1199
BstKTI GATC 3 cut(s) 472, 619, 850
BstMBI GATC 3 cut(s) 469, 616, 847
BstMWI GCNNNNNNNGC 2 cut(s) 11, 1061
BstNI CCWGG 1 cut(s) 1298
BstNSI RCATGY 4 cut(s) 508, 767, 1177, 1394
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 1296
BstSLI GKGCMC 1 cut(s) 333
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 91, 286
BstV2I GAAGAC 2 cut(s) 541, 639
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BstZ17I GTATAC 1 cut(s) 882
Bsu15I ATCGAT 1 cut(s) 441
Bsu36I CCTNAGG 1 cut(s) 495
BsuI GTATCC 1 cut(s) 688
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 1263
BtsCI GGATG 6 cut(s) 152, 976, 1291, 1339, 1408, 1447
BtsIMutI CAGTG 4 cut(s) 278, 333, 343, 636
Cac8I GCNNGC 2 cut(s) 209, 1227
CaiI CAGNNNCTG 2 cut(s) 280, 1157
CciI TCATGA 1 cut(s) 552
CfoI GCGC 2 cut(s) 207, 1199
Cfr13I GGNCC 3 cut(s) 182, 1259, 1429
ClaI ATCGAT 1 cut(s) 441
CseI GACGC 1 cut(s) 974
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 8 cut(s) 320, 505, 553, 764, 1006, 1174, 1391, 1421
DdeI CTNAG 7 cut(s) 381, 479, 495, 943, 1023, 1270, 1459
DpnI GATC 3 cut(s) 471, 618, 849
DpnII GATC 3 cut(s) 469, 616, 847
Eam1104I CTCTTC 4 cut(s) 426, 534, 583, 1095
EarI CTCTTC 4 cut(s) 426, 534, 583, 1095
Eco24I GRGCYC 1 cut(s) 942
Eco47I GGWCC 3 cut(s) 182, 1259, 1429
Eco57I CTGAAG 1 cut(s) 1109
Eco81I CCTNAGG 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 1296
EcoT22I ATGCAT 1 cut(s) 1426
EcoT38I GRGCYC 1 cut(s) 942
FaeI CATG 8 cut(s) 323, 508, 556, 767, 1009, 1177, 1394, 1424
FaqI GGGAC 2 cut(s) 168, 1245
FatI CATG 8 cut(s) 319, 504, 552, 763, 1005, 1173, 1390, 1420
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 2 cut(s) 80, 275
FokI GGATG 6 cut(s) 159, 983, 1278, 1346, 1415, 1454
FriOI GRGCYC 1 cut(s) 942
Fsp4HI GCNGC 2 cut(s) 80, 275
GlaI GCGC 2 cut(s) 206, 1198
GluI GCNGC 2 cut(s) 80, 275
GsaI CCCAGC 1 cut(s) 1120
HapII CCGG 1 cut(s) 1432
HgaI GACGC 1 cut(s) 974
HhaI GCGC 2 cut(s) 207, 1199
Hin1II CATG 8 cut(s) 323, 508, 556, 767, 1009, 1177, 1394, 1424
Hin6I GCGC 2 cut(s) 205, 1197
HinP1I GCGC 2 cut(s) 205, 1197
HincII GTYRAC 2 cut(s) 646, 802
HindII GTYRAC 2 cut(s) 646, 802
HindIII AAGCTT 1 cut(s) 1253
HinfI GANTC 9 cut(s) 31, 575, 667, 854, 1147, 1268, 1288, 1317, 1435
HpaI GTTAAC 1 cut(s) 646
HpaII CCGG 1 cut(s) 1432
HphI GGTGA 4 cut(s) 173, 223, 295, 1006
Hpy166II GTNNAC 5 cut(s) 646, 802, 882, 1179, 1267
Hpy188I TCNGA 9 cut(s) 28, 38, 94, 199, 571, 616, 694, 1251, 1477
Hpy188III TCNNGA 7 cut(s) 497, 553, 731, 851, 1127, 1432, 1439
Hpy8I GTNNAC 5 cut(s) 646, 802, 882, 1179, 1267
HpyAV CCTTC 6 cut(s) 62, 417, 630, 928, 1087, 1324
HpyCH4III ACNGT 7 cut(s) 282, 640, 650, 690, 799, 1143, 1159
HpyCH4IV ACGT 1 cut(s) 1213
HpyCH4V TGCA 9 cut(s) 535, 599, 917, 1136, 1217, 1225, 1347, 1394, 1424
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 1061
HpyF3I CTNAG 7 cut(s) 381, 479, 495, 943, 1023, 1270, 1459
HpySE526I ACGT 1 cut(s) 1213
Hsp92II CATG 8 cut(s) 323, 508, 556, 767, 1009, 1177, 1394, 1424
HspAI GCGC 2 cut(s) 205, 1197
Kpn2I TCCGGA 1 cut(s) 1431
KspAI GTTAAC 1 cut(s) 646
Kzo9I GATC 3 cut(s) 469, 616, 847
LmnI GCTCC 1 cut(s) 937
Lsp1109I GCAGC 2 cut(s) 91, 286
LweI GCATC 6 cut(s) 586, 904, 1098, 1123, 1324, 1438
MaeII ACGT 1 cut(s) 1213
MaeIII GTNAC 7 cut(s) 252, 301, 772, 793, 922, 1012, 1169
MalI GATC 3 cut(s) 471, 618, 849
MboI GATC 3 cut(s) 469, 616, 847
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 2 cut(s) 333, 942
MlyI GAGTC 2 cut(s) 569, 1262
MmeI TCCRAC 1 cut(s) 672
Mph1103I ATGCAT 1 cut(s) 1426
MroI TCCGGA 1 cut(s) 1431
MroXI GAANNNNTTC 1 cut(s) 610
MseI TTAA 4 cut(s) 218, 645, 1412, 1416
MslI CAYNNNNRTG 2 cut(s) 768, 1395
MspI CCGG 1 cut(s) 1432
MspR9I CCNGG 1 cut(s) 1298
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 1298
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 11, 1061
NdeII GATC 3 cut(s) 469, 616, 847
NlaIII CATG 8 cut(s) 323, 508, 556, 767, 1009, 1177, 1394, 1424
NlaIV GGNNCC 6 cut(s) 91, 184, 492, 849, 939, 1261
NmuCI GTSAC 4 cut(s) 252, 301, 772, 1012
NsiI ATGCAT 1 cut(s) 1426
NspI RCATGY 4 cut(s) 508, 767, 1177, 1394
PacI TTAATTAA 1 cut(s) 1416
PagI TCATGA 1 cut(s) 552
PasI CCCWGGG 1 cut(s) 1297
PciI ACATGT 2 cut(s) 763, 1173
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 7 cut(s) 31, 667, 854, 1147, 1288, 1317, 1435
PflFI GACNNNGTC 1 cut(s) 1271
PflMI CCANNNNNTGG 1 cut(s) 1426
PkrI GCNGC 2 cut(s) 81, 276
PleI GAGTC 2 cut(s) 569, 1262
PpsI GAGTC 2 cut(s) 569, 1262
Ppu21I YACGTR 1 cut(s) 1214
PscI ACATGT 2 cut(s) 763, 1173
Psp6I CCWGG 1 cut(s) 1296
PspEI GGTNACC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 1116
PspGI CCWGG 1 cut(s) 1296
PspN4I GGNNCC 6 cut(s) 91, 184, 492, 849, 939, 1261
PspPI GGNCC 3 cut(s) 182, 1259, 1429
PstNI CAGNNNCTG 2 cut(s) 280, 1157
PsuI RGATCY 1 cut(s) 847
PsyI GACNNNGTC 1 cut(s) 1271
RseI CAYNNNNRTG 2 cut(s) 768, 1395
SaqAI TTAA 4 cut(s) 218, 645, 1412, 1416
SatI GCNGC 2 cut(s) 80, 275
Sau3AI GATC 3 cut(s) 469, 616, 847
Sau96I GGNCC 3 cut(s) 182, 1259, 1429
SchI GAGTC 2 cut(s) 569, 1262
ScrFI CCNGG 1 cut(s) 1298
SduI GDGCHC 2 cut(s) 333, 942
SfaNI GCATC 6 cut(s) 586, 904, 1098, 1123, 1324, 1438
SinI GGWCC 3 cut(s) 182, 1259, 1429
SmiMI CAYNNNNRTG 2 cut(s) 768, 1395
SsiI CCGC 1 cut(s) 416
SspI AATATT 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 1296
TaaI ACNGT 7 cut(s) 282, 640, 650, 690, 799, 1143, 1159
TaiI ACGT 1 cut(s) 1216
TaqI TCGA 2 cut(s) 441, 948
TfiI GAWTC 7 cut(s) 31, 667, 854, 1147, 1288, 1317, 1435
Tru1I TTAA 4 cut(s) 218, 645, 1412, 1416
Tru9I TTAA 4 cut(s) 218, 645, 1412, 1416
TscAI CASTG 4 cut(s) 285, 333, 343, 643
TseFI GTSAC 4 cut(s) 252, 301, 772, 1012
TseI GCWGC 2 cut(s) 79, 274
Tsp45I GTSAC 4 cut(s) 252, 301, 772, 1012
TspDTI ATGAA 5 cut(s) 427, 541, 569, 1218, 1373
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 4 cut(s) 285, 333, 343, 643
Tth111I GACNNNGTC 1 cut(s) 1271
Van91I CCANNNNNTGG 1 cut(s) 1426
VpaK11BI GGWCC 3 cut(s) 182, 1259, 1429
XapI RAATTY 5 cut(s) 129, 606, 673, 963, 1207
XceI RCATGY 4 cut(s) 508, 767, 1177, 1394
XmiI GTMKAC 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 610
Zsp2I ATGCAT 1 cut(s) 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.