RchiOBHm_Chr3g0456421

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007714
Physical Location & Seq
Reverse (-)
5950185 .. 5952013
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGTACACCATGAGCTTGGAGGATTTGCCCCAAGACTGCTTCGAGCAGATTTTATCATTGACATCTCCCGGAGATGCATGTCGTTCCTCGTTAGTCTCGTTGTCGATTCGTGCCATGGCCGATATGGATAGTTTGTGGGGTATGTTTTTGCCGTCGGACTATCCAGAAATTCTGTCCAGATTAGTCACTCCAATACCTTATTCATCCAACAAGGACTTGTTCATCAGGTTGTGCAGTCCAAATCTAATCGATTGTGGTAAAAAGATGTTCTCAATAGAGAAATCAACAGGTAAAAAATGTTACATGTTAAGTGCAAGGGATCTTTCAATTACATGGGCGTGCAATCCTCTCTATTGGAGTTGGAAGTGTTCCTCCGAATCAAGATTTGCAGAGGTTGCTGAACTCAGAACCATCTGGTGGCTAGAAATATATGGCACCATGAATAGTCAATTGCTATCACCAAAAACAGTTTATAGTGCTCATCTTGTTATCAAGTTGGCCAATCGTGCATATGGTTTGGACTCATTACCTTCTGAGATTTCACTTGAAGTTGGCAATTACAAATCACAAGGCACTGTATACTTGAGTGCAAATCGGAAGACAACAGAAGTAGACGAACGTGTGAGACCAATCAGGGTTCTGGAAGAACGTCTTCGTGAGCGAACAGATGGATGGATGGAGATTGAACTGGGGAGCTTTTACAATGATGGATGTTATTATAACAAGGATGTGAAGATGAGCCTAAAAGAAGTTAAGGGTGCACACCTAAAAGGTGGCCTTATTGTTGAGGGAATTGAGATTAGGCCAAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

271

Amino Acids

30.88

Weight (kDa)

6.22

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 98 - 269 3.6e-54 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 417
AccI GTMKAC 2 cut(s) 579, 612
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 2 cut(s) 117, 498
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 417
AflIII ACRYGT 2 cut(s) 303, 619
AgsI TTSAA 3 cut(s) 327, 548, 686
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 2 cut(s) 15, 696
AluI AGCT 2 cut(s) 15, 696
Alw21I GWGCWC 2 cut(s) 481, 763
Alw26I GTCTC 2 cut(s) 100, 619
Alw44I GTGCAC 1 cut(s) 759
AlwI GGATC 1 cut(s) 327
AoxI GGCC 4 cut(s) 117, 498, 775, 803
ApaLI GTGCAC 1 cut(s) 759
ApoI RAATTY 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 651
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 500
BanI GGYRCC 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 605, 644
Bbv12I GWGCWC 2 cut(s) 481, 763
BccI CCATC 5 cut(s) 419, 662, 666, 670, 701
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 100, 619
BfaI CTAG 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 1 cut(s) 69
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 2 cut(s) 605, 644
BpuEI CTTGAG 1 cut(s) 604
BpuMI CCSGG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 693
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 5 cut(s) 203, 677, 681, 716, 733
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMII CTCAG 2 cut(s) 418, 525
BseNI ACTGG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 763
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 4 cut(s) 119, 500, 777, 805
BshNI GGYRCC 1 cut(s) 434
BshVI ATCGAT 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 481, 763
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 2 cut(s) 100, 619
BsnI GGCC 4 cut(s) 119, 500, 777, 805
Bso31I GGTCTC 1 cut(s) 619
Bsp1286I GDGCHC 2 cut(s) 481, 763
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 4 cut(s) 119, 500, 777, 805
BspCNI CTCAG 2 cut(s) 417, 526
BspDI ATCGAT 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 693
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 319
BssNAI GTATAC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 114
Bst1107I GTATAC 1 cut(s) 580
Bst4CI ACNGT 2 cut(s) 469, 577
BstAPI GCANNNNNTGC 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 404, 534
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 5 cut(s) 203, 677, 681, 716, 733
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 100, 619
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 395, 506
BstNSI RCATGY 2 cut(s) 81, 307
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 763
BstV2I GAAGAC 2 cut(s) 605, 644
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 319
BstZ17I GTATAC 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 4 cut(s) 119, 500, 777, 805
BsuTUI ATCGAT 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 5 cut(s) 203, 677, 681, 716, 733
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 4
CviAII CATG 6 cut(s) 10, 78, 115, 304, 333, 439
CviJI RGCY 8 cut(s) 15, 119, 421, 500, 696, 741, 777, 805
CviKI_1 RGCY 8 cut(s) 15, 119, 421, 500, 696, 741, 777, 805
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 404, 534
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 117, 498
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 13, 81, 118, 307, 336, 442
FalI AAGNNNNNCTT 4 cut(s) 636, 668, 762, 794
FatI CATG 6 cut(s) 9, 77, 114, 303, 332, 438
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 2 cut(s) 579, 612
FokI GGATG 5 cut(s) 190, 684, 688, 723, 740
FspBI CTAG 1 cut(s) 422
HaeIII GGCC 4 cut(s) 119, 500, 777, 805
HapII CCGG 1 cut(s) 69
Hin1II CATG 6 cut(s) 13, 81, 118, 307, 336, 442
HinfI GANTC 3 cut(s) 106, 377, 521
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 4 cut(s) 6, 580, 613, 761
Hpy188I TCNGA 5 cut(s) 157, 376, 407, 535, 597
Hpy188III TCNNGA 5 cut(s) 164, 177, 381, 641, 656
Hpy8I GTNNAC 4 cut(s) 6, 580, 613, 761
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 2 cut(s) 469, 577
HpyCH4IV ACGT 2 cut(s) 619, 649
HpyCH4V TGCA 8 cut(s) 77, 234, 314, 342, 389, 509, 590, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 506
HpyF3I CTNAG 2 cut(s) 404, 534
HpySE526I ACGT 2 cut(s) 619, 649
Hsp92II CATG 6 cut(s) 13, 81, 118, 307, 336, 442
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 693
LpnPI CCDG 9 cut(s) 82, 177, 190, 211, 273, 400, 619, 626, 674
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 619, 649
MaeIII GTNAC 2 cut(s) 184, 299
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 4 cut(s) 610, 644, 656, 745
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 481, 763
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 6 cut(s) 168, 327, 449, 556, 792, 811
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 3 cut(s) 135, 231, 341
MnlI CCTC 6 cut(s) 13, 97, 357, 382, 385, 781
Mox20I TGGCCA 1 cut(s) 500
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 500
MseI TTAA 2 cut(s) 308, 753
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 500
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 395, 506
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 511
NdeII GATC 1 cut(s) 319
NlaIII CATG 6 cut(s) 13, 81, 118, 307, 336, 442
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 2 cut(s) 81, 307
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 106, 377
PflMI CCANNNNNTGG 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 67
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PscI ACATGT 1 cut(s) 303
PsiI TTATAA 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 436
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 2 cut(s) 308, 753
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 481, 763
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 6 cut(s) 168, 327, 449, 556, 792, 811
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 469, 577
TaiI ACGT 2 cut(s) 622, 652
TaqI TCGA 3 cut(s) 42, 104, 249
TasI AATT 6 cut(s) 168, 327, 449, 556, 792, 811
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 106, 377
Tru1I TTAA 2 cut(s) 308, 753
Tru9I TTAA 2 cut(s) 308, 753
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 192, 211, 455
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 417
VneI GTGCAC 1 cut(s) 759
XapI RAATTY 1 cut(s) 168
XceI RCATGY 2 cut(s) 81, 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 2 cut(s) 579, 612
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.