Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Forward (+)

6168792 .. 6172274

Gene Structure 3483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGCTTCTTCTTCCTCAACACTCTTTGCAGCCATTGACATGGGCACAAACTCATTCAAAATGATCATAATCCGAGCCTACCCAGATGGCAAGTTCCTCACCATTGATCGTCTCAGAGAGCCTGTGGTTCTTGGCCGTGACACATCATCATCTACAACCCCTTTTACACTCTCAGCTCAATCTCAGCTCATTGCTATTGAGGCCCTGAAGAAGTTTCAGAACACATTGATCTCCTACAAAATCAGCAAAGCTCAAATCCGCTGTGTTGCAACAGCAGCTGTGCGTGAGGCTGTGAATAAAGGTGAGTTCTTGAAATGTGTTAGTGAGAAGATAGGTTTTGAGGTTGATGTGTTGCCTGGTGAAGAAGAAGCTAGGCTTGTGTATCTGGGTATGCTTCAGTTTTGGCCTATATATGAGAAATTGGTTCTGGGTGTTGATATCGGAGGTGGGTCTACTGAGTTTGTGATTGGGAAGCAGGGGAAAGTTGTTTTTGGGGCTTCATTGAAGTTGGGGCATGTGAATTTGACCCAGAAATTTGGAAGCAATAAAGAAAAGGTTGCTCAGATTAGGGAGCATATTGGGTTGGTTGTTAAAGAATCTGGGTTGGTTAGGAAGATTAAAGATTGTGGCTTTGAAGTTGTTGTTGGGTCCTCTGGTACTATTAAGGCAGTTGAGAAGGCAGTGTTTGATGGGTATGTGAATAAGAGCAATGTGATTGAGGTTAGCAATGTGGCTTCTTTTGGGGATGGTAGGAAAGATTGGAGGTTGAGTAGAGGAGAAGTGAAGGGTGTTGTTGAGAGTTTGTGCGGTGGAGGAGAGGGAGAGAAGATTAGGAGAGAAAAGTTCTTCGAAAGGCGGTCTGAGTTTATTGTTGCTGGGGCTGTGTTGTTGGAGGAGATATTTGAGGTGCTTGGAATTGAGGAAATGGAGGTTTCTGGTTATGCATTGGCAGAAGGTGTAATTGCAGAAAGTTTGGCTAAGGTTAACGGTGGCTATGATCTGAATGCCAATGCAAGGTGGTCATCTATTGTTCGGCTTGCGATGAGGTATAATGGCAAGAAGATGTTGAAAGCTGCTTCTCAGTGTGCCATCATTGCAAAGGAGATTTTTGAAGGTTTAAGAAAATGTGATGACCTAGCTGATAATCATGCTGCCTCCTTAGATGACAAGGATCTTGAATATCTTGAAGCTGCAAGCTTGCTTCACAATATTGGGGTTTTCATTGGGAAAAAAGGTTACCACAAGCACTCTTATTGTATTATCATGAATGGCGAGCATCTCCATGGTTACAGTTCTGAGGAGGTTAAGCTGATAGCACTACTTGCAAGACATCATAGAAAGCAATTACCAAGCTTTGATCCTACTTGCTTTCAACAGTTTCCAAGAGAGATCACAAAGAAATTCAGATATCTATGCACAATTATCCGTGTTTCTTTTGCACTACAACAAATGGAATTCTCAAACTATGAAGGTTTTAAGCTGGTAAGCTGTGGTGTAAAAGATCAAACCTCTTTACATGTTGTAAACCCTCTAGCTGAGGATATTGAGGATGAACTAAGAGAAGAATTGGAACAGTTCAAACTGGTATTCCTTAAAGAGCTGCTCATTGTTGCTCCTTCGAGTGTTCCAGATATGATGGATATTCGCATGACAGATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

554

Amino Acids

61.44

Weight (kDa)

6.64

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ppx-GppA	PF02541	28 - 326	1.4e-47	Ppx/GppA phosphatase family
Ppx-GppA_III	PF21447	357 - 485	2.7e-17	Ppx/GppA phosphatase, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	452
AciI	CCGC	3 cut(s)	259, 807, 856
AclWI	GGATC	2 cut(s)	1179, 1352
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	4 cut(s)	520, 533, 1400, 1454
AcuI	CTGAAG	2 cut(s)	227, 380
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	1014
AflIII	ACRYGT	1 cut(s)	1516
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	1179, 1352
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	133, 201, 404
ApeKI	GCWGC	6 cut(s)	29, 275, 1073, 1151, 1190, 1600
ApoI	RAATTY	4 cut(s)	520, 533, 1400, 1454
AspS9I	GGNCC	2 cut(s)	202, 648
AsuHPI	GGTGA	3 cut(s)	91, 314, 371
AsuII	TTCGAA	1 cut(s)	849
AvaII	GGWCC	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	47
BbvCI	CCTCAGC	1 cut(s)	1536
BbvI	GCAGC	6 cut(s)	41, 287, 1060, 1138, 1177, 1587
BccI	CCATC	5 cut(s)	80, 683, 740, 1097, 1630
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	372, 1136, 1532
BisI	GCNGC	6 cut(s)	30, 276, 1074, 1152, 1191, 1601
BlsI	GCNGC	6 cut(s)	31, 277, 1075, 1153, 1192, 1602
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	202, 648
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	1285
Bpu10I	CCTNAGC	2 cut(s)	978, 1536
Bpu14I	TTCGAA	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	1282
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	1 cut(s)	1014
Bse1I	ACTGG	1 cut(s)	1587
Bse3DI	GCAATG	4 cut(s)	189, 715, 733, 1092
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	1282
BseGI	GGATG	2 cut(s)	751, 1555
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	1014
BseMI	GCAATG	4 cut(s)	189, 715, 733, 1092
BseMII	CTCAG	9 cut(s)	127, 186, 197, 447, 575, 852, 1094, 1287, 1527
BseNI	ACTGG	1 cut(s)	1587
BseRI	GAGGAG	4 cut(s)	789, 828, 908, 1313
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	6 cut(s)	41, 287, 1060, 1138, 1177, 1587
BseYI	CCCAGC	1 cut(s)	875
BshFI	GGCC	3 cut(s)	135, 203, 406
BslI	CCNNNNNNNGG	1 cut(s)	1014
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	3 cut(s)	135, 203, 406
Bsp119I	TTCGAA	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
Bsp19I	CCATGG	1 cut(s)	1282
BspACI	CCGC	3 cut(s)	259, 807, 856
BspANI	GGCC	3 cut(s)	135, 203, 406
BspCNI	CTCAG	9 cut(s)	126, 185, 196, 448, 574, 853, 1093, 1288, 1528
BspHI	TCATGA	1 cut(s)	1263
BspLI	GGNNCC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	1179, 1352
BspT104I	TTCGAA	1 cut(s)	849
BsrDI	GCAATG	4 cut(s)	189, 715, 733, 1092
BsrI	ACTGG	1 cut(s)	1587
BssECI	CCNNGG	1 cut(s)	1282
BssMI	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
BssT1I	CCWWGG	1 cut(s)	1282
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	989, 1292, 1377, 1575
BstAPI	GCANNNNNTGC	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	849
BstC8I	GCNNGC	4 cut(s)	1038, 1195, 1199, 1274
BstDSI	CCRYGG	1 cut(s)	1282
BstEII	GGTNACC	1 cut(s)	1235
BstF5I	GGATG	2 cut(s)	751, 1555
BstKTI	GATC	8 cut(s)	66, 109, 231, 1000, 1174, 1360, 1392, 1504
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 275, 1094, 1322
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	2 cut(s)	518, 1520
BstPI	GGTNACC	1 cut(s)	1235
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	6 cut(s)	41, 287, 1060, 1138, 1177, 1587
BstX2I	RGATCY	1 cut(s)	1171
BstXI	CCANNNNNNTGG	2 cut(s)	40, 536
BstYI	RGATCY	1 cut(s)	1171
BsuRI	GGCC	3 cut(s)	135, 203, 406
BtgI	CCRYGG	1 cut(s)	1282
BtgZI	GCGATG	1 cut(s)	1055
BtsCI	GGATG	2 cut(s)	751, 1555
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	687, 1088
Cac8I	GCNNGC	4 cut(s)	1038, 1195, 1199, 1274
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	1263
Cfr13I	GGNCC	2 cut(s)	202, 648
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	7 cut(s)	40, 515, 1148, 1264, 1283, 1517, 1648
CviQI	GTAC	1 cut(s)	657
DpnI	GATC	8 cut(s)	65, 108, 230, 999, 1173, 1359, 1391, 1503
DpnII	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	1282
Eco32I	GATATC	2 cut(s)	439, 1409
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	2 cut(s)	227, 380
Eco91I	GGTNACC	1 cut(s)	1235
EcoO109I	RGGNCCY	2 cut(s)	202, 648
EcoO65I	GGTNACC	1 cut(s)	1235
EcoRI	GAATTC	1 cut(s)	1454
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	2 cut(s)	439, 1409
EcoT14I	CCWWGG	1 cut(s)	1282
EcoT22I	ATGCAT	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	1282
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	7 cut(s)	43, 518, 1151, 1267, 1286, 1520, 1651
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	7 cut(s)	39, 514, 1147, 1263, 1282, 1516, 1647
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	6 cut(s)	30, 276, 1074, 1152, 1191, 1601
FokI	GGATG	2 cut(s)	758, 1562
Fsp4HI	GCNGC	6 cut(s)	30, 276, 1074, 1152, 1191, 1601
FspBI	CTAG	3 cut(s)	372, 1136, 1532
GluI	GCNGC	6 cut(s)	30, 276, 1074, 1152, 1191, 1601
GsaI	CCCAGC	1 cut(s)	879
HaeIII	GGCC	3 cut(s)	135, 203, 406
Hin1II	CATG	7 cut(s)	43, 518, 1151, 1267, 1286, 1520, 1651
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HindIII	AAGCTT	2 cut(s)	1195, 1351
HinfI	GANTC	1 cut(s)	596
HpaI	GTTAAC	1 cut(s)	985
HphI	GGTGA	3 cut(s)	91, 314, 371
Hpy166II	GTNNAC	3 cut(s)	453, 985, 1525
Hpy188I	TCNGA	9 cut(s)	74, 116, 219, 443, 564, 862, 1002, 1297, 1406
Hpy188III	TCNNGA	5 cut(s)	310, 1175, 1184, 1264, 1628
Hpy8I	GTNNAC	3 cut(s)	453, 985, 1525
HpyAV	CCTTC	6 cut(s)	670, 778, 947, 1106, 1463, 1626
HpyCH4III	ACNGT	4 cut(s)	989, 1292, 1377, 1575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 275, 1094, 1322
Hsp92II	CATG	7 cut(s)	43, 518, 1151, 1267, 1286, 1520, 1651
Ksp22I	TGATCA	1 cut(s)	63
KspAI	GTTAAC	1 cut(s)	985
Kzo9I	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
LmnI	GCTCC	2 cut(s)	571, 1618
Lsp1109I	GCAGC	6 cut(s)	41, 287, 1060, 1138, 1177, 1587
LweI	GCATC	1 cut(s)	1285
MaeI	CTAG	3 cut(s)	372, 1136, 1532
MaeIII	GTNAC	3 cut(s)	137, 1235, 1286
MalI	GATC	8 cut(s)	65, 108, 230, 999, 1173, 1359, 1391, 1503
MboI	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
MflI	RGATCY	1 cut(s)	1171
MhlI	GDGCHC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	870
Mph1103I	ATGCAT	1 cut(s)	946
MseI	TTAA	8 cut(s)	591, 618, 663, 984, 1118, 1305, 1476, 1593
MslI	CAYNNNNRTG	2 cut(s)	38, 1281
MspA1I	CMGCKG	2 cut(s)	261, 278
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	4 cut(s)	200, 275, 1094, 1322
NcoI	CCATGG	1 cut(s)	1282
NdeII	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
NlaIII	CATG	7 cut(s)	43, 518, 1151, 1267, 1286, 1520, 1651
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	518, 1520
NspV	TTCGAA	1 cut(s)	849
PagI	TCATGA	1 cut(s)	1263
PciI	ACATGT	1 cut(s)	1516
PctI	GAATGC	1 cut(s)	1009
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	6 cut(s)	31, 277, 1075, 1153, 1192, 1602
PpuMI	RGGWCCY	1 cut(s)	648
PscI	ACATGT	1 cut(s)	1516
Psp5II	RGGWCCY	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	355
PspEI	GGTNACC	1 cut(s)	1235
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	2 cut(s)	202, 648
PspPPI	RGGWCCY	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	1171
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	2 cut(s)	38, 1281
SaqAI	TTAA	8 cut(s)	591, 618, 663, 984, 1118, 1305, 1476, 1593
SatI	GCNGC	6 cut(s)	30, 276, 1074, 1152, 1191, 1601
Sau3AI	GATC	8 cut(s)	63, 106, 228, 997, 1171, 1357, 1389, 1501
Sau96I	GGNCC	2 cut(s)	202, 648
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	1285
SfuI	TTCGAA	1 cut(s)	849
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	38, 1281
SsiI	CCGC	3 cut(s)	259, 807, 856
SspI	AATATT	1 cut(s)	1210
SspMI	CTAG	3 cut(s)	372, 1136, 1532
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	1282
TaaI	ACNGT	4 cut(s)	989, 1292, 1377, 1575
TaqI	TCGA	2 cut(s)	849, 1619
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	8 cut(s)	591, 618, 663, 984, 1118, 1305, 1476, 1593
Tru9I	TTAA	8 cut(s)	591, 618, 663, 984, 1118, 1305, 1476, 1593
TscAI	CASTG	2 cut(s)	687, 1088
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	6 cut(s)	29, 275, 1073, 1151, 1190, 1600
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	5 cut(s)	489, 1210, 1280, 1482, 1566
TspGWI	ACGGA	1 cut(s)	1415
TspRI	CASTG	2 cut(s)	687, 1088
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	4 cut(s)	520, 533, 1400, 1454
XceI	RCATGY	2 cut(s)	518, 1520
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	3 cut(s)	372, 1136, 1532
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.