Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008418

Physical Location & Seq

Genomic Coordinates Reverse (-)

9099154 .. 9101325

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGAACCATTAGAGTCTATTCTTCCTAACTTTGTCCAGCCACCTGTGGTCAATCTTGAGGACACGCCACCGTTGCCACCTCTACCACCTATGCAATGGAGGTTAGGAAAGATGCAACATGCTTCGCCAGCCTCACATAGAGATTTGGGAGGTGTTAGCAATGATTCATTCTTGCCAATGCAGTCACTGAAAGCTGATGAGAAAGCTCAATTTGATCTACCAGCACCGCAGAGAGAGCTACTGCAGCCTCAACACCCATTTTTATCTCTCACAGCAGAAGATATGAAGTCCCAACCTGTTTTTGGACCTTTGGTGGGCCATGTTGTGCCTCCCGCACAATTTTTGCAAGAACCAACTGATAATGATTCCAATCATCAATACAATTTTCCTGATTTAGGGGGAATGCAATTCTCAAGCCCATTCATACAACTATCGAAGGTCTCTGGTGACAGCTCTGGACACAATGACATTGATTTAGAGGGAGAGAAGGGTCTGTCTAGTTCGAAGCGAATCACAGTTCCAGGCACTGAATGTACAACATCTGGACAAGACCCTGTATTTTCTCATGGGGAAATTGTCCATCCCCAACAGTTGATACCGGAAACAGGTTTAGAGCTTGAGGTACTTAAACAATCATTCGATAATTCAGAATTGGAACAAGCTGGACCCCTTGCCACATCTGTGACAGCACCAACCATGGAAGATGAGCAGCCTCAGCATAGTTTGCCAACAACAGAGGGAGGAAAGGTTCAGTCTTCTACAAAGCCATTAACAGTACCAGGAACTGAATGCACAACTTCTAGACATGACCCTATCCAACCTCCGCAACAATTAACGAAGGAATCGGGTCTAGAGCCTGAGGATCTTTGCTATTCATCGAAAAACTCAGAAAGGGAACAAGAAAAGCCTCTTGCTACATCACTGACAGCGACAACTACAGTAGATGAGAAGCCTCAGCATAGTTTGCCAACATCAGAGGGAGAAACAGCATGGTCATCAAATACTTCTGATGTAATGCCGGACTCAGAATTTGGACAGTCTAATGGAACAGTGAATAAGATCCCTCGTCCTAGAAATCCCCTTATTGATGCTGTCACTGCTCATGGCCAAAGCAAGTTGAAAAAGGCAAGTGAACGAATTCAGCCTCAGATTGAACCAAAGGTAGACGAAAGAGATTTATTTCTGCAACAGATAAGAACCAAGTCCTTCAACCTGAAGCCTGCAAATGTGACAAGATCCACACCACGACCCAATATTCAGGGTCATAATCCCAACTTGAAGGTCATCTCTCTCTTAGAGAAAAAAGCAAGTGCAATCCGCCAGGCATTTGTGGGAAGTGATGAAGATGATGATGAGAGTTGGAGTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010638 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051125 GO:0051127 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

457

Amino Acids

50.02

Weight (kDa)

4.86

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38440
fragaria_vesca	FvH4_3g27480 FvH4_6g10280 FvH4_6g10280
malus_domestica	MD04G1168300.v1.1 MD12G1181800.v1.1
prunus_persica	Prupe.6G286500_v2.0.a1
pyrus_communis	pycom04g14930 pycom12g16620 pycom12g17100
rosa_chinensis	RchiOBHm_Chr3g0461031 RchiOBHm_Chr3g0461041
rosa_laevigata	RLG00000024956
rosa_multiflora	Rmu_co8405745.1_g000001 Rmu_co8433481.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418920
rosa_rugosa	Rorug03G0048000 Rorug03G0048000
rosa_samantha	Rh3AG105300 Rh3BG109300 Rh3CG110900 Rh3DG111000
rosa_wichuraiana	Rw3G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1164
AciI	CCGC	4 cut(s)	227, 333, 824, 1318
AclWI	GGATC	3 cut(s)	870, 1054, 1230
AcoI	YGGCCR	1 cut(s)	1105
AcsI	RAATTY	2 cut(s)	1028, 1137
AcuI	CTGAAG	1 cut(s)	1235
AfaI	GTAC	3 cut(s)	535, 624, 777
AfiI	CCNNNNNNNGG	4 cut(s)	302, 314, 395, 605
AgsI	TTSAA	4 cut(s)	1120, 1154, 1210, 1279
AjnI	CCWGG	3 cut(s)	520, 778, 1320
AleI	CACNNNNGTG	1 cut(s)	680
AloI	GAACNNNNNNTCC	2 cut(s)	732, 764
AluBI	AGCT	6 cut(s)	194, 206, 238, 453, 616, 662
AluI	AGCT	6 cut(s)	194, 206, 238, 453, 616, 662
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	3 cut(s)	870, 1054, 1230
AlwNI	CAGNNNCTG	3 cut(s)	187, 527, 785
AoxI	GGCC	2 cut(s)	316, 1105
ApeKI	GCWGC	2 cut(s)	244, 709
ApoI	RAATTY	2 cut(s)	1028, 1137
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspS9I	GGNCC	3 cut(s)	305, 316, 665
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	305, 665
AxyI	CCTNAGG	1 cut(s)	858
BalI	TGGCCA	1 cut(s)	1107
BbsI	GAAGAC	1 cut(s)	747
BbvCI	CCTCAGC	2 cut(s)	714, 954
BbvI	GCAGC	2 cut(s)	256, 721
BccI	CCATC	1 cut(s)	588
BciT130I	CCWGG	3 cut(s)	522, 780, 1322
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	4 cut(s)	498, 801, 851, 1071
BfmI	CTRYAG	2 cut(s)	242, 936
BisI	GCNGC	2 cut(s)	245, 710
BlsI	GCNGC	2 cut(s)	246, 711
Bme1390I	CCNGG	3 cut(s)	522, 780, 1322
Bme18I	GGWCC	2 cut(s)	305, 665
BmgT120I	GGNCC	3 cut(s)	305, 316, 665
BmiI	GGNNCC	2 cut(s)	6, 667
BmrFI	CCNGG	3 cut(s)	522, 780, 1322
BmsI	GCATC	2 cut(s)	102, 1078
BpiI	GAAGAC	1 cut(s)	747
Bpu10I	CCTNAGC	2 cut(s)	714, 954
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	3 cut(s)	77, 397, 638
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 314, 395, 605
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	2 cut(s)	101, 166
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	522, 780, 1322
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	4 cut(s)	302, 314, 395, 605
BseMI	GCAATG	2 cut(s)	101, 166
BseMII	CTCAG	6 cut(s)	728, 849, 900, 968, 1038, 1160
BseXI	GCAGC	2 cut(s)	256, 721
BshFI	GGCC	2 cut(s)	318, 1107
BsiSI	CCGG	2 cut(s)	599, 1019
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	4 cut(s)	302, 314, 395, 605
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	274
BsmI	GAATGC	2 cut(s)	408, 794
BsnI	GGCC	2 cut(s)	318, 1107
Bso31I	GGTCTC	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1407I	TGTACA	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	214, 862, 1059, 1235
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	4 cut(s)	227, 333, 824, 1318
BspANI	GGCC	2 cut(s)	318, 1107
BspCNI	CTCAG	6 cut(s)	727, 850, 899, 967, 1037, 1159
BspLI	GGNNCC	2 cut(s)	6, 667
BspMAI	CTGCAG	1 cut(s)	246
BspPI	GGATC	3 cut(s)	870, 1054, 1230
BspT104I	TTCGAA	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	101, 166
BsrGI	TGTACA	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	4 cut(s)	214, 862, 1059, 1235
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	522, 780, 1322
Bst4CI	ACNGT	7 cut(s)	72, 517, 591, 775, 940, 1038, 1051
BstAPI	GCANNNNNTGC	2 cut(s)	724, 964
BstAUI	TGTACA	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	129, 1221
BstDEI	CTNAG	8 cut(s)	714, 858, 886, 954, 1024, 1146, 1294, 1371
BstDSI	CCRYGG	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	4 cut(s)	217, 865, 1062, 1238
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	4 cut(s)	214, 862, 1059, 1235
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 128, 235, 244, 715, 724, 964, 1097
BstNI	CCWGG	3 cut(s)	522, 780, 1322
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	520, 778, 1320
BstSFI	CTRYAG	2 cut(s)	242, 936
BstV1I	GCAGC	2 cut(s)	256, 721
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	3 cut(s)	862, 1059, 1235
BstYI	RGATCY	3 cut(s)	862, 1059, 1235
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	2 cut(s)	318, 1107
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	5 cut(s)	185, 525, 920, 1056, 1095
Cac8I	GCNNGC	2 cut(s)	129, 1221
CaiI	CAGNNNCTG	3 cut(s)	187, 527, 785
Cfr13I	GGNCC	3 cut(s)	305, 316, 665
Csp6I	GTAC	3 cut(s)	534, 623, 776
CviAII	CATG	7 cut(s)	119, 320, 566, 697, 806, 990, 1103
CviQI	GTAC	3 cut(s)	534, 623, 776
DdeI	CTNAG	8 cut(s)	714, 858, 886, 954, 1024, 1146, 1294, 1371
DpnI	GATC	4 cut(s)	216, 864, 1061, 1237
DpnII	GATC	4 cut(s)	214, 862, 1059, 1235
EaeI	YGGCCR	1 cut(s)	1105
EciI	GGCGGA	1 cut(s)	1307
Eco130I	CCWWGG	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	305, 665
Eco57I	CTGAAG	1 cut(s)	1235
Eco81I	CCTNAGG	1 cut(s)	858
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	1137
EcoRII	CCWGG	3 cut(s)	520, 778, 1320
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	7 cut(s)	122, 323, 569, 700, 809, 993, 1106
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	7 cut(s)	118, 319, 565, 696, 805, 989, 1102
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	2 cut(s)	245, 710
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	245, 710
FspBI	CTAG	4 cut(s)	498, 801, 851, 1071
GluI	GCNGC	2 cut(s)	245, 710
HaeIII	GGCC	2 cut(s)	318, 1107
HapII	CCGG	2 cut(s)	599, 1019
Hin1II	CATG	7 cut(s)	122, 323, 569, 700, 809, 993, 1106
HinfI	GANTC	7 cut(s)	14, 164, 365, 510, 842, 1022, 1367
HpaII	CCGG	2 cut(s)	599, 1019
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	1133, 1165
Hpy188I	TCNGA	6 cut(s)	649, 889, 976, 1009, 1027, 1149
Hpy188III	TCNNGA	6 cut(s)	56, 389, 456, 543, 801, 851
Hpy8I	GTNNAC	2 cut(s)	1133, 1165
HpyAV	CCTTC	5 cut(s)	430, 481, 832, 1216, 1273
HpyCH4III	ACNGT	7 cut(s)	72, 517, 591, 775, 940, 1038, 1051
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 128, 235, 244, 715, 724, 964, 1097
HpyF3I	CTNAG	8 cut(s)	714, 858, 886, 954, 1024, 1146, 1294, 1371
Hsp92II	CATG	7 cut(s)	122, 323, 569, 700, 809, 993, 1106
Kzo9I	GATC	4 cut(s)	214, 862, 1059, 1235
Lsp1109I	GCAGC	2 cut(s)	256, 721
LweI	GCATC	2 cut(s)	102, 1078
MaeI	CTAG	4 cut(s)	498, 801, 851, 1071
MaeIII	GTNAC	5 cut(s)	183, 446, 682, 1093, 1228
MalI	GATC	4 cut(s)	216, 864, 1061, 1237
MboI	GATC	4 cut(s)	214, 862, 1059, 1235
MboII	GAAGA	5 cut(s)	14, 290, 713, 747, 1355
MflI	RGATCY	3 cut(s)	862, 1059, 1235
MlsI	TGGCCA	1 cut(s)	1107
MluNI	TGGCCA	1 cut(s)	1107
MlyI	GAGTC	2 cut(s)	23, 1016
MmeI	TCCRAC	2 cut(s)	841, 1340
Mox20I	TGGCCA	1 cut(s)	1107
MroXI	GAANNNNTTC	1 cut(s)	1137
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	3 cut(s)	627, 770, 833
MslI	CAYNNNNRTG	1 cut(s)	680
Msp20I	TGGCCA	1 cut(s)	1107
MspI	CCGG	2 cut(s)	599, 1019
MspR9I	CCNGG	3 cut(s)	522, 780, 1322
Mva1269I	GAATGC	2 cut(s)	408, 794
MvaI	CCWGG	3 cut(s)	522, 780, 1322
MwoI	GCNNNNNNNGC	8 cut(s)	73, 128, 235, 244, 715, 724, 964, 1097
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	4 cut(s)	214, 862, 1059, 1235
NlaIII	CATG	7 cut(s)	122, 323, 569, 700, 809, 993, 1106
NlaIV	GGNNCC	2 cut(s)	6, 667
NmuCI	GTSAC	5 cut(s)	183, 446, 682, 1093, 1228
NspI	RCATGY	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	503
OliI	CACNNNNGTG	1 cut(s)	680
PctI	GAATGC	2 cut(s)	408, 794
PdmI	GAANNNNTTC	1 cut(s)	1137
PfeI	GAWTC	5 cut(s)	164, 365, 510, 842, 1367
PkrI	GCNGC	2 cut(s)	246, 711
PleI	GAGTC	2 cut(s)	22, 1016
PpsI	GAGTC	2 cut(s)	22, 1016
Psp6I	CCWGG	3 cut(s)	520, 778, 1320
PspGI	CCWGG	3 cut(s)	520, 778, 1320
PspN4I	GGNNCC	2 cut(s)	6, 667
PspPI	GGNCC	3 cut(s)	305, 316, 665
PstI	CTGCAG	1 cut(s)	246
PstNI	CAGNNNCTG	3 cut(s)	187, 527, 785
PsuI	RGATCY	3 cut(s)	862, 1059, 1235
RsaI	GTAC	3 cut(s)	535, 624, 777
RsaNI	GTAC	3 cut(s)	534, 623, 776
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	627, 770, 833
SatI	GCNGC	2 cut(s)	245, 710
Sau3AI	GATC	4 cut(s)	214, 862, 1059, 1235
Sau96I	GGNCC	3 cut(s)	305, 316, 665
SchI	GAGTC	2 cut(s)	23, 1016
ScrFI	CCNGG	3 cut(s)	522, 780, 1322
SfaNI	GCATC	2 cut(s)	102, 1078
SfcI	CTRYAG	2 cut(s)	242, 936
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	2 cut(s)	305, 665
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	3 cut(s)	56, 412, 617
SmoI	CTYRAG	3 cut(s)	56, 412, 617
SsiI	CCGC	4 cut(s)	227, 333, 824, 1318
SspI	AATATT	1 cut(s)	1255
SspMI	CTAG	4 cut(s)	498, 801, 851, 1071
StyD4I	CCNGG	3 cut(s)	520, 778, 1320
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	7 cut(s)	72, 517, 591, 775, 940, 1038, 1051
TaqI	TCGA	4 cut(s)	434, 503, 639, 878
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	5 cut(s)	164, 365, 510, 842, 1367
Tru1I	TTAA	3 cut(s)	627, 770, 833
Tru9I	TTAA	3 cut(s)	627, 770, 833
TscAI	CASTG	5 cut(s)	192, 532, 927, 1056, 1102
TseFI	GTSAC	5 cut(s)	183, 446, 682, 1093, 1228
TseI	GCWGC	2 cut(s)	244, 709
Tsp45I	GTSAC	5 cut(s)	183, 446, 682, 1093, 1228
TspDTI	ATGAA	5 cut(s)	156, 299, 412, 864, 1356
TspRI	CASTG	5 cut(s)	192, 532, 927, 1056, 1102
VpaK11BI	GGWCC	2 cut(s)	305, 665
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	2 cut(s)	1028, 1137
XbaI	TCTAGA	2 cut(s)	800, 850
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	2 cut(s)	93, 299
XmiI	GTMKAC	1 cut(s)	1164
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	4 cut(s)	498, 801, 851, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.