RchiOBHm_Chr3g0465481

Tropinone reductase homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
12221110 .. 12221707
598 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGCTTAACATCCTAGCATCAAGAAATGCAAGTATTGTATTTATCGCCTCCATAGCTGGTGTCATAGCTCTACCTAGACTATCCACTTATGCGGGATCAAAGAGTGCACTGATCCAAATTTCAAAGAATCTGGCATGTGAATGGGCAAGAGACAACATTCGAACAAACACTGTGGCACCATGGGATGTAAACACTCCCCATCGGTCGCATTGCAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

7.95

Weight (kDa)

10.29

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 5 - 70 5.6e-15 short chain dehydrogenase
adh_short_C2 PF13561 5 - 69 7.4e-14 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 103, 106
AcsI RAATTY 1 cut(s) 117
AgsI TTSAA 1 cut(s) 123
AluBI AGCT 2 cut(s) 56, 68
AluI AGCT 2 cut(s) 56, 68
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 144
Alw44I GTGCAC 1 cut(s) 105
AlwI GGATC 2 cut(s) 103, 106
ApaLI GTGCAC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 117
AsuII TTCGAA 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 14, 75
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 26
Bpu14I TTCGAA 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 9, 190
BseMI GCAATG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 95, 111
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 103, 106
BspT104I TTCGAA 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 95, 111
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 9, 190
BstKTI GATC 2 cut(s) 98, 114
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 95, 111
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 2 cut(s) 9, 190
BtsIMutI CAGTG 2 cut(s) 107, 168
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CviAII CATG 2 cut(s) 135, 180
CviJI RGCY 3 cut(s) 56, 68, 218
CviKI_1 RGCY 3 cut(s) 56, 68, 218
DpnI GATC 2 cut(s) 97, 113
DpnII GATC 2 cut(s) 95, 111
Eco130I CCWWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 138, 183
FaiI YATR 5 cut(s) 53, 65, 90, 136, 181
FatI CATG 2 cut(s) 134, 179
FauI CCCGC 1 cut(s) 85
FokI GGATG 1 cut(s) 197
FspBI CTAG 2 cut(s) 14, 75
Hin1II CATG 2 cut(s) 138, 183
HinfI GANTC 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 107, 190
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 107, 190
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 29, 107, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 138, 183
Kzo9I GATC 2 cut(s) 95, 111
LpnPI CCDG 2 cut(s) 42, 116
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 14, 75
MalI GATC 2 cut(s) 97, 113
MboI GATC 2 cut(s) 95, 111
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 117
MnlI CCTC 1 cut(s) 58
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 179
NdeII GATC 2 cut(s) 95, 111
NlaIII CATG 2 cut(s) 138, 183
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 1 cut(s) 138
NspV TTCGAA 1 cut(s) 160
PfeI GAWTC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 2 cut(s) 95, 111
SduI GDGCHC 1 cut(s) 109
SetI ASST 3 cut(s) 58, 70, 76
SfaNI GCATC 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 139
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 92
SspMI CTAG 2 cut(s) 14, 75
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 160
TaqII GACCGA 1 cut(s) 192
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 2 cut(s) 114, 175
TspRI CASTG 2 cut(s) 114, 175
VneI GTGCAC 1 cut(s) 105
XapI RAATTY 1 cut(s) 117
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 14, 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.