Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003501

Physical Location & Seq

Genomic Coordinates Reverse (-)

12772266 .. 12773238

Gene Structure 973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTCAGTCACATTTCTTTGGACAGTCCAATGTGACTTACAGAACTGATTTTCCTAGCAAGCCAGTTGTGCAATTTAACTACACAGGAACTGCACCAAATAACACTAATGTGAGCAATGCAACAAGGGCAGTGGTGTTACCATTCAACACAACTGTGGAGGTGGTGTTGCAAGACACAAGCATTATTGGTGCGGAGAGCCACCCACTTCATCTTCATGGGTTCAATTTCTTTGTTGTTGGACAAGGTTTTGGAAACTTTGATCAGAACAAAGATCCTGCAAAGTTCAATCTGGTGGACCCTGTTGAGAGGAACACTATAGGTGTTCCGGCCGGTGGTTGGGTTGCCATTCGTTTCTTGGCAGACAATCCAGGAGTGTGGTTTATGCACTGCCATTTGGAAATTCATACAAGCTGGGGACTGAGGATGGCTTGGATCGTTCAGGATGGGCCACAACCAAATCAGAAGCTACCTCCACCACCGGCAGATCTTCCAAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

6.35

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	18 - 149	4.4e-44	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29130
fragaria_vesca	FvH4_6g13430
malus_domestica	MD03G1087400.v1.1 MD04G1131200.v1.1 MD11G1096500.v1.1 MD12G1144300.v1.1
prunus_persica	Prupe.6G072100_v2.0.a1 Prupe.6G257700_v2.0.a1
pyrus_communis	pycom03g06930 pycom04g11940 pycom11g08180 pycom12g13880
rosa_chinensis	RchiOBHm_Chr3g0466301 RchiOBHm_Chr3g0466311 RchiOBHm_Chr5g0065931
rosa_laevigata	RLG00000024588 RLG00000035828
rosa_multiflora	Rmu_co8069514.1_g000001 Rmu_co8514891.1_g000001 Rmu_sc0000350.1_g000021 Rmu_sc0003480.1_g000018 Rmu_sc0005869.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015240 Rroxscaffold_6G00414620
rosa_rugosa	Rorug03G0080800 Rorug05G0375600
rosa_samantha	Rh3AG127200 Rh3BG148500 Rh3DG149200 Rh5AG433600 Rh5BG450200 Rh5CG472500 Rh5DG463600
rosa_wichuraiana	Rw3G012010 Rw5G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	269, 443
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	335, 339
AgsI	TTSAA	3 cut(s)	148, 226, 289
AjnI	CCWGG	1 cut(s)	370
AleI	CACNNNNGTG	2 cut(s)	110, 155
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
AluBI	AGCT	2 cut(s)	414, 469
AluI	AGCT	2 cut(s)	414, 469
AlwI	GGATC	2 cut(s)	269, 443
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	330, 449
ApoI	RAATTY	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	298, 449
AvaII	GGWCC	1 cut(s)	298
BccI	CCATC	2 cut(s)	421, 440
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	298, 449
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 339
Bse118I	RCCGGY	2 cut(s)	332, 481
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	432, 451
BseLI	CCNNNNNNNGG	2 cut(s)	335, 339
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	65
BseX3I	CGGCCG	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	332, 451
BsiEI	CGRYCG	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	329, 333, 482
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	335, 339
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	332, 451
Bsp143I	GATC	4 cut(s)	262, 274, 435, 487
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	332, 451
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	269, 443
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	2 cut(s)	332, 481
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	2 cut(s)	332, 481
BssMI	GATC	4 cut(s)	262, 274, 435, 487
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	27, 157
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	432, 451
BstKTI	GATC	4 cut(s)	265, 277, 438, 490
BstMBI	GATC	4 cut(s)	262, 274, 435, 487
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 128
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	274, 487
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	2 cut(s)	274, 487
BstZI	CGGCCG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	332, 451
BtsCI	GGATG	2 cut(s)	432, 451
BtsI	GCAGTG	2 cut(s)	138, 388
BtsIMutI	CAGTG	2 cut(s)	138, 388
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	2 cut(s)	332, 481
Cfr13I	GGNCC	2 cut(s)	298, 449
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	7 cut(s)	64, 201, 332, 414, 431, 451, 469
CviKI_1	RGCY	7 cut(s)	64, 201, 332, 414, 431, 451, 469
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	4 cut(s)	264, 276, 437, 489
DpnII	GATC	4 cut(s)	262, 274, 435, 487
EaeI	YGGCCR	1 cut(s)	330
EagI	CGGCCG	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	298
Eco52I	CGGCCG	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	221
FaiI	YATR	4 cut(s)	219, 320, 386, 408
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	2 cut(s)	439, 458
FspBI	CTAG	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	332, 451
HapII	CCGG	3 cut(s)	329, 333, 482
Hin1II	CATG	1 cut(s)	221
HpaII	CCGG	3 cut(s)	329, 333, 482
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	267, 465
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	27, 157
HpyCH4V	TGCA	6 cut(s)	73, 95, 122, 172, 281, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 128
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	262, 274, 435, 487
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	9, 34, 138
MalI	GATC	4 cut(s)	264, 276, 437, 489
MboI	GATC	4 cut(s)	262, 274, 435, 487
MboII	GAAGA	2 cut(s)	206, 482
MflI	RGATCY	2 cut(s)	274, 487
MluCI	AATT	3 cut(s)	74, 226, 402
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	154, 303, 417, 483
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	3 cut(s)	110, 155, 216
MspI	CCGG	3 cut(s)	329, 333, 482
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	70, 128
NdeII	GATC	4 cut(s)	262, 274, 435, 487
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	9, 34
OliI	CACNNNNGTG	2 cut(s)	110, 155
PfoI	TCCNGGA	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	298, 449
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	274, 487
RseI	CAYNNNNRTG	3 cut(s)	110, 155, 216
SaqAI	TTAA	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	262, 274, 435, 487
Sau96I	GGNCC	2 cut(s)	298, 449
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	6 cut(s)	165, 250, 325, 416, 471, 475
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	3 cut(s)	110, 155, 216
Sse9I	AATT	3 cut(s)	74, 226, 402
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	27, 157
TasI	AATT	3 cut(s)	74, 226, 402
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	138, 395
TseFI	GTSAC	2 cut(s)	9, 34
Tsp45I	GTSAC	2 cut(s)	9, 34
TspDTI	ATGAA	3 cut(s)	200, 206, 395
TspRI	CASTG	2 cut(s)	138, 395
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.