RchiOBHm_Chr3g0478741

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006586
Physical Location & Seq
Forward (+)
24427442 .. 24431781
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
ATGATGCTATGTCAAATGAACAAAGTTTTCCAAAAAAAAATTAGTGCTGTCAATGGGATCGGATCGTGTCAGATTCGTATCGTGTTAAGATACCAAGTTTTGTGTGTGTTGTTATTATTATATTGTTTTTATGAATTAGAAAAAGCCTATATTAAGCTTTGGAGAGCTGCGAGTGAGTCAAACATGGCGCGTGCCACAGTCCGTTATAGTCGTTGGGCTTGGCGCTTCTTAACATCGAATACCCAAAACGAGCCGTTTCTCTCTTCCGCTGCAGCCACCTTCTCCACCGCACCGGAAAATGCGAATCCGGGTCGACCCGGACCACCTCCGATCCGAGTCGCGCTCACCGAGTCATCCGGGCGAGGCGTCTTCGCGACCCGGAAAATCGAGACCGGTGAGCTCTTACACACCGCCAAACCCATCCTGTCTCACCCTTCTCTCTCCGCCCTCCATAAGGTCTGCTACTTCTGCCTCCGAAAGCTCAAAACCACCGACGCCCCTCAACCCCATGGCGTTTCCTATTGCAGTGAGGAGTGTCGACAACAAGCTAAGGGATTTCATGATATTGAGATGACAGCAGATTGGTCAGCTTACGACGACTATTGCCGGTCTAATCGTTTGAAATATCCTCTACTTGTAAAGCGGTTGGCTTGTATGGTTATGTCAGGAGCTACACCTGCCAACCTTCTTGACATACTCCAACCTGCCAGCTTATCTCCAGAGATGATTTCTGAGATGGAAGAGGGATACGGCTTGCTAAGGAATGCCTACATAAACTCAAATATCACGGATGAACAGATGTCCTTTTTGACTAAACAATGGTACATCGGCATACTTTCCCGGATTCGTATTAATGCATTTCGTATTGAGTTGGCTGGGGGATACGATGATCTCCTGTCATCATTAGCAGCCTCTATAGAATCTGAAGCTGCTGTTGGGAATGCTGTTTATATGCTTCCATCCTTTTATAATCATGATTGTGATCCAAATGCCCACATTATATGGATAGAGAATGCAGATGGGAGATTGAAGGCCCTTCGTGATGTGGATGAAGGGGAAGAGCTCCGGATCTGCTATATTGATGCAAGTATGGATCATGATGCTCGGCAGAGTTTCCTGTCACAAGGGTTTGGTTTTCAGTGCAATTGTCCCCGGTGCTTGTCTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

390

Amino Acids

43.8

Weight (kDa)

6.71

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 120 - 359 2.2e-11 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 2 cut(s) 685, 712
AccI GTMKAC 2 cut(s) 313, 538
AccII CGCG 3 cut(s) 190, 341, 374
AccIII TCCGGA 1 cut(s) 1065
AciI CCGC 5 cut(s) 267, 288, 411, 444, 643
AclWI GGATC 6 cut(s) 65, 70, 325, 977, 1076, 1101
AcuI CTGAAG 1 cut(s) 945
AcyI GRCGYC 2 cut(s) 366, 495
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 2 cut(s) 622, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
Alw21I GWGCWC 2 cut(s) 402, 1065
Alw26I GTCTC 2 cut(s) 383, 432
AlwI GGATC 6 cut(s) 65, 70, 325, 977, 1076, 1101
Aor13HI TCCGGA 1 cut(s) 1065
AoxI GGCC 1 cut(s) 1032
ApeKI GCWGC 5 cut(s) 167, 269, 272, 908, 929
AseI ATTAAT 1 cut(s) 852
AsiGI ACCGGT 1 cut(s) 392
AspLEI GCGC 3 cut(s) 190, 225, 343
AspS9I GGNCC 2 cut(s) 320, 1033
AsuC2I CCSGG 6 cut(s) 309, 318, 358, 379, 841, 1153
AsuHPI GGTGA 3 cut(s) 337, 407, 422
AvaII GGWCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 402, 1065
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 402, 1065
BbvI GCAGC 5 cut(s) 154, 256, 284, 916, 920
BccI CCATC 4 cut(s) 428, 730, 967, 1013
BceAI ACGGC 2 cut(s) 238, 766
BciVI GTATCC 2 cut(s) 740, 875
BcnI CCSGG 6 cut(s) 309, 318, 358, 379, 841, 1153
BcoDI GTCTC 2 cut(s) 383, 432
BfmI CTRYAG 2 cut(s) 270, 915
BfoI RGCGCY 1 cut(s) 226
BfuAI ACCTGC 2 cut(s) 685, 712
BfuI GTATCC 2 cut(s) 740, 875
BisI GCNGC 5 cut(s) 168, 270, 273, 909, 930
BlsI GCNGC 5 cut(s) 169, 271, 274, 910, 931
Bme1390I CCNGG 6 cut(s) 309, 318, 358, 379, 841, 1153
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 320, 1033
BmrFI CCNGG 6 cut(s) 309, 318, 358, 379, 841, 1153
BmsI GCATC 2 cut(s) 1072, 1090
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 1 cut(s) 702
Bpu10I CCTNAGC 2 cut(s) 549, 758
BpuMI CCSGG 6 cut(s) 309, 318, 358, 379, 841, 1153
BsaBI GATNNNNATC 2 cut(s) 77, 981
BsaHI GRCGYC 2 cut(s) 366, 495
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 508, 1151
BsaWI WCCGGW 3 cut(s) 292, 392, 1065
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse118I RCCGGY 2 cut(s) 392, 606
Bse8I GATNNNNATC 2 cut(s) 77, 981
BseAI TCCGGA 1 cut(s) 1065
BseDI CCNNGG 2 cut(s) 508, 1151
BseGI GGATG 5 cut(s) 353, 420, 796, 959, 1054
BseJI GATNNNNATC 2 cut(s) 77, 981
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 723
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 5 cut(s) 154, 256, 284, 916, 920
BseYI CCCAGC 1 cut(s) 875
Bsh1236I CGCG 3 cut(s) 190, 341, 374
BshFI GGCC 1 cut(s) 1034
BshTI ACCGGT 1 cut(s) 392
BsiHKAI GWGCWC 2 cut(s) 402, 1065
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 2 cut(s) 383, 432
BsmFI GGGAC 1 cut(s) 1134
BsmI GAATGC 3 cut(s) 769, 946, 1018
BsnI GGCC 1 cut(s) 1034
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 402, 1065
Bsp13I TCCGGA 1 cut(s) 1065
Bsp143I GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
Bsp19I CCATGG 1 cut(s) 508
Bsp68I TCGCGA 1 cut(s) 374
BspACI CCGC 5 cut(s) 267, 288, 411, 444, 643
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 1 cut(s) 724
BspEI TCCGGA 1 cut(s) 1065
BspFNI CGCG 3 cut(s) 190, 341, 374
BspHI TCATGA 3 cut(s) 559, 973, 1096
BspMAI CTGCAG 1 cut(s) 274
BspMI ACCTGC 2 cut(s) 685, 712
BspPI GGATC 6 cut(s) 65, 70, 325, 977, 1076, 1101
BspQI GCTCTTC 1 cut(s) 1053
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 392, 606
BssAI RCCGGY 2 cut(s) 392, 606
BssECI CCNNGG 2 cut(s) 508, 1151
BssMI GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
BssNI GRCGYC 2 cut(s) 366, 495
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 3 cut(s) 268, 735, 1053
BstACI GRCGYC 2 cut(s) 366, 495
BstC8I GCNNGC 3 cut(s) 192, 709, 755
BstDEI CTNAG 3 cut(s) 549, 732, 758
BstDSI CCRYGG 1 cut(s) 508
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 5 cut(s) 353, 420, 796, 959, 1054
BstFNI CGCG 3 cut(s) 190, 341, 374
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 3 cut(s) 190, 225, 343
BstKTI GATC 7 cut(s) 60, 65, 333, 892, 985, 1071, 1096
BstMAI GTCTC 2 cut(s) 383, 432
BstMBI GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 468, 677
BstSCI CCNGG 6 cut(s) 307, 316, 356, 377, 839, 1151
BstSFI CTRYAG 2 cut(s) 270, 915
BstUI CGCG 3 cut(s) 190, 341, 374
BstV1I GCAGC 5 cut(s) 154, 256, 284, 916, 920
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 1068
BstYI RGATCY 1 cut(s) 1068
BsuI GTATCC 2 cut(s) 740, 875
BsuRI GGCC 1 cut(s) 1034
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 5 cut(s) 353, 420, 796, 959, 1054
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 532, 1145
BtuMI TCGCGA 1 cut(s) 374
BveI ACCTGC 2 cut(s) 685, 712
Cac8I GCNNGC 3 cut(s) 192, 709, 755
CciI TCATGA 3 cut(s) 559, 973, 1096
CfoI GCGC 3 cut(s) 190, 225, 343
Cfr10I RCCGGY 2 cut(s) 392, 606
Cfr13I GGNCC 2 cut(s) 320, 1033
CseI GACGC 2 cut(s) 355, 503
Csp6I GTAC 1 cut(s) 823
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 5 cut(s) 184, 509, 560, 974, 1097
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 3 cut(s) 549, 732, 758
DpnI GATC 7 cut(s) 59, 64, 332, 891, 984, 1070, 1095
DpnII GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
Eam1104I CTCTTC 3 cut(s) 268, 735, 1053
EarI CTCTTC 3 cut(s) 268, 735, 1053
EciI GGCGGA 1 cut(s) 433
Ecl136II GAGCTC 2 cut(s) 400, 1063
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 2 cut(s) 402, 1065
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 320
Eco53kI GAGCTC 2 cut(s) 400, 1063
Eco57I CTGAAG 1 cut(s) 945
EcoICRI GAGCTC 2 cut(s) 400, 1063
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 1033
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 2 cut(s) 402, 1065
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 5 cut(s) 187, 512, 563, 977, 1100
FaqI GGGAC 1 cut(s) 1134
FatI CATG 5 cut(s) 183, 508, 559, 973, 1096
FblI GTMKAC 2 cut(s) 313, 538
Fnu4HI GCNGC 5 cut(s) 168, 270, 273, 909, 930
FokI GGATG 5 cut(s) 340, 407, 803, 946, 1061
FriOI GRGCYC 2 cut(s) 402, 1065
Fsp4HI GCNGC 5 cut(s) 168, 270, 273, 909, 930
GlaI GCGC 3 cut(s) 189, 224, 342
GluI GCNGC 5 cut(s) 168, 270, 273, 909, 930
GsaI CCCAGC 1 cut(s) 879
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 1034
HgaI GACGC 2 cut(s) 355, 503
HhaI GCGC 3 cut(s) 190, 225, 343
Hin1I GRCGYC 2 cut(s) 366, 495
Hin1II CATG 5 cut(s) 187, 512, 563, 977, 1100
Hin6I GCGC 3 cut(s) 188, 223, 341
HinP1I GCGC 3 cut(s) 188, 223, 341
HincII GTYRAC 2 cut(s) 314, 539
HindII GTYRAC 2 cut(s) 314, 539
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 7 cut(s) 73, 176, 304, 336, 350, 844, 920
HphI GGTGA 3 cut(s) 337, 407, 422
Hpy166II GTNNAC 2 cut(s) 314, 539
Hpy188I TCNGA 7 cut(s) 62, 72, 330, 335, 476, 733, 925
Hpy8I GTNNAC 2 cut(s) 314, 539
Hpy99I CGWCG 2 cut(s) 497, 599
HpyAV CCTTC 6 cut(s) 289, 444, 695, 1024, 1046, 1046
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 6 cut(s) 272, 525, 857, 1016, 1085, 1143
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 677
HpyF3I CTNAG 3 cut(s) 549, 732, 758
Hsp92I GRCGYC 2 cut(s) 366, 495
Hsp92II CATG 5 cut(s) 187, 512, 563, 977, 1100
HspAI GCGC 3 cut(s) 188, 223, 341
Kpn2I TCCGGA 1 cut(s) 1065
Kzo9I GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 2 cut(s) 668, 1068
Lsp1109I GCAGC 5 cut(s) 154, 256, 284, 916, 920
LweI GCATC 2 cut(s) 1072, 1090
MaeIII GTNAC 1 cut(s) 1119
MalI GATC 7 cut(s) 59, 64, 332, 891, 984, 1070, 1095
MboI GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
MboII GAAGA 4 cut(s) 255, 361, 752, 1070
MfeI CAATTG 1 cut(s) 1144
MflI RGATCY 1 cut(s) 1068
MhlI GDGCHC 2 cut(s) 402, 1065
MluCI AATT 3 cut(s) 39, 134, 1144
MlyI GAGTC 3 cut(s) 185, 345, 359
MmeI TCCRAC 1 cut(s) 724
MnlI CCTC 9 cut(s) 336, 356, 458, 482, 510, 523, 639, 736, 922
Mph1103I ATGCAT 1 cut(s) 859
MroI TCCGGA 1 cut(s) 1065
MseI TTAA 5 cut(s) 86, 153, 230, 852, 1171
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 6 cut(s) 309, 318, 358, 379, 841, 1153
MunI CAATTG 1 cut(s) 1144
Mva1269I GAATGC 3 cut(s) 769, 946, 1018
MvnI CGCG 3 cut(s) 190, 341, 374
MwoI GCNNNNNNNGC 2 cut(s) 468, 677
NciI CCSGG 6 cut(s) 309, 318, 358, 379, 841, 1153
NcoI CCATGG 1 cut(s) 508
NdeII GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
NlaIII CATG 5 cut(s) 187, 512, 563, 977, 1100
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 1 cut(s) 1119
NruI TCGCGA 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 859
PagI TCATGA 3 cut(s) 559, 973, 1096
PaqCI CACCTGC 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 3 cut(s) 769, 946, 1018
PfeI GAWTC 4 cut(s) 73, 304, 844, 920
PfoI TCCNGGA 1 cut(s) 839
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 5 cut(s) 169, 271, 274, 910, 931
PleI GAGTC 3 cut(s) 184, 344, 358
PpsI GAGTC 3 cut(s) 184, 344, 358
PshBI ATTAAT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 969
Psp124BI GAGCTC 2 cut(s) 402, 1065
PspFI CCCAGC 1 cut(s) 875
PspPI GGNCC 2 cut(s) 320, 1033
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 1068
RruI TCGCGA 1 cut(s) 374
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
RseI CAYNNNNRTG 1 cut(s) 978
SacI GAGCTC 2 cut(s) 402, 1065
SalI GTCGAC 2 cut(s) 312, 537
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 5 cut(s) 86, 153, 230, 852, 1171
SatI GCNGC 5 cut(s) 168, 270, 273, 909, 930
Sau3AI GATC 7 cut(s) 57, 62, 330, 889, 982, 1068, 1093
Sau96I GGNCC 2 cut(s) 320, 1033
SchI GAGTC 3 cut(s) 185, 345, 359
ScrFI CCNGG 6 cut(s) 309, 318, 358, 379, 841, 1153
SduI GDGCHC 2 cut(s) 402, 1065
SfaNI GCATC 2 cut(s) 1072, 1090
SfcI CTRYAG 2 cut(s) 270, 915
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 978
Sse9I AATT 3 cut(s) 39, 134, 1144
SsiI CCGC 5 cut(s) 267, 288, 411, 444, 643
SstI GAGCTC 2 cut(s) 402, 1065
StyD4I CCNGG 6 cut(s) 307, 316, 356, 377, 839, 1151
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 236, 313, 387, 538
TasI AATT 3 cut(s) 39, 134, 1144
TfiI GAWTC 4 cut(s) 73, 304, 844, 920
Tru1I TTAA 5 cut(s) 86, 153, 230, 852, 1171
Tru9I TTAA 5 cut(s) 86, 153, 230, 852, 1171
TscAI CASTG 2 cut(s) 532, 1145
TseFI GTSAC 1 cut(s) 1119
TseI GCWGC 5 cut(s) 167, 269, 272, 908, 929
Tsp45I GTSAC 1 cut(s) 1119
TspDTI ATGAA 5 cut(s) 32, 147, 548, 807, 1065
TspGWI ACGGA 2 cut(s) 191, 803
TspRI CASTG 2 cut(s) 532, 1145
VpaK11BI GGWCC 1 cut(s) 320
VspI ATTAAT 1 cut(s) 852
XagI CCTNNNNNAGG 1 cut(s) 452
XmiI GTMKAC 2 cut(s) 313, 538
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.