Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Forward (+)

30350009 .. 30355816

Gene Structure 5808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGTTTACTCAACTCTCCTCCACTCGCGCACCGTCTTGCTCTGGCGGCGTTCACCCAACCTCGCCTCTCTTCTCTACTCTTCTCTTTTGTTTCTCCGCACAGAGGAAGAAGACACACGACGGCGACTTGTAGCGCGATTACAGGTGAATGTGCTGCTCCGCTGGATTATGATGATAATGACGATGCTAAAGCGAGGGAGAAAGATGCTGCTCTGCATTTGGCTCTCTCACGGCTTTCTGGCGATTTCGGGCACGAATCCATGTTGTCCCTGCCGCGGTTTTTTCGCTCGAGGCGGGCACCTGTTATCTCCACTGGCTCCTTGAAGCTTGATATAGCTTTGGGGACTGGAGGATTGCCAAAGGGAAGAATTGTTGAGATTTATGGGCAGGAAGCATCTGGCAAGACTACACTCGCACTTCACATCGTCAAGGAAGCCCAAAAGCTTGGAGGGTATTGTGCATATCTGGATGTAGAGAATGCGTTGGACCCTTCACTTGCAGAATCGATGGGTGTAAACACAGAAAACCTTCTCATTTCGCATCCCAATTCTGCTGAAAATGTGCTGAATGTGGTCGACACTCTGACTAAAAGTGGTTCCTTGGATGTAATTGTTGTGGATAGTGTAGCTGCTCTGGTCCCCCAGTGTGAACTTGATGTTGCAATTGGTAGTGCATACCCAGACGCTCAGTCAAGAATAATGACCCAAGCACTACGAAAAATTCATTCTTCATTAAGCCATTCTCAAGCACTTGTTGTTTTTATAAATCAGGTTAGATCAAGTCCAAACTCAGGGCAAGGTTTTGGACCTGTGGATGAGGTCACCTGTGGTGGAAATGCCTTGAGATTCTATGCAGCAGTTCGATTGAGAATAAAAAGAACCCAGTTGCTTAAGACTGAGGATCAGATTACAGGTCTTGGGATTTCTGTGCAAGTGGTGAAAAATAAATTGGCACTTGCAATGAAGAAGGCTGATCTGGGGATACAGTTTGGTAGAGGGTTATGCTGTGAATCTGAGGTATTGCAATTGGCTTGCGAACATGGGGTCATTGCGAAAGATGGAAGCAACTACCACATAGGAAGAAAGGTTTTTAGTAATGTACATTCAGCAGAACAGTATCTGGCTAAAAATGATGATATTTTGAATAAGATAGTTAGGATCTTGAGGCAAACTTTATTTGAAAAAGATAGTCAATTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

400

Amino Acids

43.24

Weight (kDa)

8.55

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	71 - 334	1.8e-87	RecA N-terminal domain
Rad51	PF08423	102 - 294	2.6e-10	Rad51
ATPase	PF06745	104 - 176	3.5e-06	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	3 cut(s)	29, 137, 277
AciI	CCGC	6 cut(s)	47, 98, 161, 275, 277, 295
AclWI	GGATC	2 cut(s)	909, 1166
AcsI	RAATTY	1 cut(s)	720
AfaI	GTAC	1 cut(s)	1101
AfiI	CCNNNNNNNGG	3 cut(s)	104, 276, 791
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	3 cut(s)	325, 1144, 1181
AhdI	GACNNNNNGTC	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AluBI	AGCT	4 cut(s)	328, 338, 445, 629
AluI	AGCT	4 cut(s)	328, 338, 445, 629
AlwI	GGATC	2 cut(s)	909, 1166
AlwNI	CAGNNNCTG	1 cut(s)	1120
Ama87I	CYCGRG	1 cut(s)	289
ApeKI	GCWGC	4 cut(s)	155, 209, 629, 854
ApoI	RAATTY	1 cut(s)	720
ArsI	GACNNNNNNTTYG	2 cut(s)	1029, 1061
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	31, 137
AspS9I	GGNCC	3 cut(s)	487, 637, 806
AsuHPI	GGTGA	4 cut(s)	46, 158, 814, 949
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	487, 637, 806
BaeGI	GKGCMC	2 cut(s)	255, 301
BanI	GGYRCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	142, 196, 616, 866
BccI	CCATC	2 cut(s)	502, 1052
BceAI	ACGGC	2 cut(s)	138, 248
BciVI	GTATCC	1 cut(s)	975
BfrI	CTTAAG	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	975
BisI	GCNGC	6 cut(s)	48, 156, 210, 275, 630, 855
BlsI	GCNGC	6 cut(s)	49, 157, 211, 276, 631, 856
Bme18I	GGWCC	3 cut(s)	487, 637, 806
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	487, 637, 806
BmiI	GGNNCC	5 cut(s)	300, 319, 489, 598, 639
BmrI	ACTGGG	2 cut(s)	637, 877
BmsI	GCATC	4 cut(s)	175, 196, 404, 550
BmuI	ACTGGG	2 cut(s)	637, 877
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	3 cut(s)	729, 862, 1183
Bsa29I	ATCGAT	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	275, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 276, 791
Bse1I	ACTGG	4 cut(s)	319, 352, 643, 883
Bse3DI	GCAATG	2 cut(s)	966, 1047
BseCI	ATCGAT	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	275, 600
BseGI	GGATG	4 cut(s)	475, 541, 610, 820
BseLI	CCNNNNNNNGG	3 cut(s)	104, 276, 791
BseMI	GCAATG	2 cut(s)	966, 1047
BseMII	CTCAG	4 cut(s)	701, 804, 888, 1005
BseNI	ACTGG	4 cut(s)	319, 352, 643, 883
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	2 cut(s)	255, 301
BseXI	GCAGC	4 cut(s)	142, 196, 616, 866
Bsh1236I	CGCG	3 cut(s)	29, 137, 277
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	289
BslFI	GGGAC	3 cut(s)	253, 358, 623
BslI	CCNNNNNNNGG	3 cut(s)	104, 276, 791
BsmFI	GGGAC	3 cut(s)	253, 358, 623
BsmI	GAATGC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	255, 301
Bsp1407I	TGTACA	1 cut(s)	1099
Bsp143I	GATC	4 cut(s)	776, 901, 973, 1158
BspACI	CCGC	6 cut(s)	47, 98, 161, 275, 277, 295
BspCNI	CTCAG	4 cut(s)	700, 803, 889, 1006
BspDI	ATCGAT	1 cut(s)	506
BspFNI	CGCG	3 cut(s)	29, 137, 277
BspLI	GGNNCC	5 cut(s)	300, 319, 489, 598, 639
BspPI	GGATC	2 cut(s)	909, 1166
BspT107I	GGYRCC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	2 cut(s)	966, 1047
BsrGI	TGTACA	1 cut(s)	1099
BsrI	ACTGG	4 cut(s)	319, 352, 643, 883
BssECI	CCNNGG	2 cut(s)	275, 600
BssMI	GATC	4 cut(s)	776, 901, 973, 1158
BssT1I	CCWWGG	1 cut(s)	600
Bst4CI	ACNGT	3 cut(s)	35, 987, 1116
Bst6I	CTCTTC	2 cut(s)	76, 86
BstAFI	CTTAAG	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	1099
BstC8I	GCNNGC	2 cut(s)	297, 1033
BstDEI	CTNAG	4 cut(s)	687, 790, 897, 1014
BstDSI	CCRYGG	1 cut(s)	275
BstEII	GGTNACC	1 cut(s)	820
BstF5I	GGATG	4 cut(s)	475, 541, 610, 820
BstFNI	CGCG	3 cut(s)	29, 137, 277
BstHHI	GCGC	2 cut(s)	31, 137
BstKTI	GATC	4 cut(s)	779, 904, 976, 1161
BstMBI	GATC	4 cut(s)	776, 901, 973, 1158
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	820
BstSLI	GKGCMC	2 cut(s)	255, 301
BstUI	CGCG	3 cut(s)	29, 137, 277
BstV1I	GCAGC	4 cut(s)	142, 196, 616, 866
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	1158
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	1158
Bsu15I	ATCGAT	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	975
BsuTUI	ATCGAT	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	4 cut(s)	475, 541, 610, 820
BtsIMutI	CAGTG	2 cut(s)	312, 650
Cac8I	GCNNGC	2 cut(s)	297, 1033
CaiI	CAGNNNCTG	1 cut(s)	1120
CfoI	GCGC	2 cut(s)	31, 137
Cfr13I	GGNCC	3 cut(s)	487, 637, 806
Cfr42I	CCGCGG	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	506
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	1100
CviAII	CATG	2 cut(s)	262, 1040
CviQI	GTAC	1 cut(s)	1100
DdeI	CTNAG	4 cut(s)	687, 790, 897, 1014
DpnI	GATC	4 cut(s)	778, 903, 975, 1160
DpnII	GATC	4 cut(s)	776, 901, 973, 1158
DriI	GACNNNNNGTC	1 cut(s)	688
Eam1104I	CTCTTC	2 cut(s)	76, 86
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	2 cut(s)	76, 86
Eco130I	CCWWGG	1 cut(s)	600
Eco47I	GGWCC	3 cut(s)	487, 637, 806
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	820
EcoO65I	GGTNACC	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	2 cut(s)	265, 1043
FaqI	GGGAC	3 cut(s)	253, 358, 623
FatI	CATG	2 cut(s)	261, 1039
FauI	CCCGC	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	48, 156, 210, 275, 630, 855
FokI	GGATG	4 cut(s)	482, 528, 617, 827
Fsp4HI	GCNGC	6 cut(s)	48, 156, 210, 275, 630, 855
GlaI	GCGC	2 cut(s)	30, 136
GluI	GCNGC	6 cut(s)	48, 156, 210, 275, 630, 855
GsuI	CTGGAG	1 cut(s)	369
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	2 cut(s)	31, 137
Hin1II	CATG	2 cut(s)	265, 1043
Hin6I	GCGC	2 cut(s)	29, 135
HinP1I	GCGC	2 cut(s)	29, 135
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	2 cut(s)	326, 443
HinfI	GANTC	4 cut(s)	257, 503, 846, 1010
HphI	GGTGA	4 cut(s)	46, 158, 814, 949
Hpy166II	GTNNAC	5 cut(s)	8, 54, 517, 577, 650
Hpy188I	TCNGA	3 cut(s)	585, 906, 1015
Hpy188III	TCNNGA	3 cut(s)	467, 693, 1162
Hpy8I	GTNNAC	5 cut(s)	8, 54, 517, 577, 650
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	501, 539, 961
HpyCH4III	ACNGT	3 cut(s)	35, 987, 1116
HpyCH4V	TGCA	9 cut(s)	217, 461, 500, 662, 674, 854, 931, 959, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	4 cut(s)	687, 790, 897, 1014
Hsp92II	CATG	2 cut(s)	265, 1043
HspAI	GCGC	2 cut(s)	29, 135
KspI	CCGCGG	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	776, 901, 973, 1158
LmnI	GCTCC	2 cut(s)	163, 323
Lsp1109I	GCAGC	4 cut(s)	142, 196, 616, 866
LweI	GCATC	4 cut(s)	175, 196, 404, 550
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	4 cut(s)	778, 903, 975, 1160
MboI	GATC	4 cut(s)	776, 901, 973, 1158
MboII	GAAGA	8 cut(s)	63, 73, 120, 123, 378, 720, 976, 1092
MfeI	CAATTG	2 cut(s)	663, 1025
MflI	RGATCY	1 cut(s)	1158
MhlI	GDGCHC	2 cut(s)	255, 301
MluCI	AATT	8 cut(s)	369, 547, 609, 663, 720, 947, 1025, 1193
MmeI	TCCRAC	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	2 cut(s)	734, 891
MspA1I	CMGCKG	2 cut(s)	163, 277
MspCI	CTTAAG	1 cut(s)	890
MunI	CAATTG	2 cut(s)	663, 1025
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	3 cut(s)	29, 137, 277
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	4 cut(s)	776, 901, 973, 1158
NlaIII	CATG	2 cut(s)	265, 1043
NlaIV	GGNNCC	5 cut(s)	300, 319, 489, 598, 639
NmuCI	GTSAC	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	289
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	257, 503, 846, 1010
PkrI	GCNGC	6 cut(s)	49, 157, 211, 276, 631, 856
PsiI	TTATAA	1 cut(s)	764
PspEI	GGTNACC	1 cut(s)	820
PspN4I	GGNNCC	5 cut(s)	300, 319, 489, 598, 639
PspPI	GGNCC	3 cut(s)	487, 637, 806
PspXI	VCTCGAGB	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	1120
PsuI	RGATCY	1 cut(s)	1158
RsaI	GTAC	1 cut(s)	1101
RsaNI	GTAC	1 cut(s)	1100
SacII	CCGCGG	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	734, 891
SatI	GCNGC	6 cut(s)	48, 156, 210, 275, 630, 855
Sau3AI	GATC	4 cut(s)	776, 901, 973, 1158
Sau96I	GGNCC	3 cut(s)	487, 637, 806
SduI	GDGCHC	2 cut(s)	255, 301
SfaNI	GCATC	4 cut(s)	175, 196, 404, 550
Sfr274I	CTCGAG	1 cut(s)	289
Sfr303I	CCGCGG	1 cut(s)	278
SgrBI	CCGCGG	1 cut(s)	278
SinI	GGWCC	3 cut(s)	487, 637, 806
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	5 cut(s)	289, 744, 841, 890, 1162
SmoI	CTYRAG	5 cut(s)	289, 744, 841, 890, 1162
Sse9I	AATT	8 cut(s)	369, 547, 609, 663, 720, 947, 1025, 1193
SsiI	CCGC	6 cut(s)	47, 98, 161, 275, 277, 295
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	35, 987, 1116
TaqI	TCGA	4 cut(s)	290, 506, 576, 862
TasI	AATT	8 cut(s)	369, 547, 609, 663, 720, 947, 1025, 1193
TatI	WGTACW	1 cut(s)	1099
TauI	GCSGC	2 cut(s)	50, 277
TfiI	GAWTC	4 cut(s)	257, 503, 846, 1010
Tru1I	TTAA	2 cut(s)	734, 891
Tru9I	TTAA	2 cut(s)	734, 891
TscAI	CASTG	2 cut(s)	319, 650
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	4 cut(s)	155, 209, 629, 854
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	3 cut(s)	713, 720, 977
TspRI	CASTG	2 cut(s)	319, 650
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	3 cut(s)	487, 637, 806
XapI	RAATTY	1 cut(s)	720
XhoI	CTCGAG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.