RchiOBHm_Chr3g0487611

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
34820540 .. 34824125
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1953 bp
ATGGAAAACGTTGTGTTCTACCAAACGGATTGCGAGACCCTTTGGTCTCAGATTAAATGCAAAGAGAAGCAGATTCAACTCAAACGGAGGTGGTTGTTGGGTCTTCCTCTTTCTGAATCTGAGCACAACCTGTTTCAAAGTCCTGACCTTGAACGAGATTCATTGCCGGAATCTTTGCTCAGGGAAGATGATCTGTTCTATGAGACTGCAAAGTCTTCTGTTCAAGCAGCCTTTGGAGCATGCAATGTTGAAGCAGGGAAGCAAGATAATATTCTAATGCTCGACAGAAGAAGTATATCCACAGCCTTGTCATCGCCATGTCTTGATGATTTGACTACTAAGGGGCTTCACCTTATAGCTACCACACTTGCAGCAGGTTCAGTCAAGTTTGAGAACACTCGTTGCGAGATGAAGAAGTTTATCAGAGAATCTCTGCAAAAAAAATTTAGAAGCCAAAATAATCATGACGATGAGTTGGGCATTTTTAAGCAACTATCTCAACATCTTAGTGACCCACAAAATTTCCGAGATAAGGTTGTTACAGTTCTTTCCAGATCACAGTCTCAACGTCTTGCTGTTAGAAAGGTACTGGATGGACTTGAGGGCTTGCCTTCTGAGACCCTATTTGCAATGAGCAGAAAGCTTAAAGGAGTACAACATTTACCTCAGTTACATCAAAAGAAAAATACATTGTACAAAAAGACTTTGATTGATCAATTGCGGAAAACTTGTGACACGATGCTTTCCGAACTTGGTACAGGAGATGAACTGCAGGAATCACTAGCCAAAGCCATGGCAGTAGCAGGCCTATCAGTGAAGTTACAACCAGGTCTCCATAATTCGACTGTAACAGAATTTCGCCGATTTTCAAAAGAGGTGAAGTTACATCCAGGTCTCCATAATTCGACTGTAACAGAATTTCGCCGATTTTCACAAGAGATGAAGATACTGCAGGATGATATTGCAAGGGCTATTTGGCTAGTTGAAAAAAAGGTTAGCTTGCTAGAGCTCGAAAAGTTGAAGACTATATTAGGCCGAGATGCTGAAGTATCAAACAGGAGCTTACGATATGCAATTAAGAAAATGCTAACTGAATATCTCTTCGAGTGTGGTGATATGGATACAATTCCGAAGTCATTATTGGAAGCTCTTGATATTATCAACATGTCACGAAACAAGCTGCATAGACTCTTCTTAAAGGATGAAATTGAAGAAGAGGTGGAATGTATATTGAATGTGAGTGCTCAGGCAAAGCAGATTGTATGGGATATGTTCCCTGACCATGAGTTAGATCTAGACTTTGCTGAGGCATATGTTGAGGAAATGGAGGATGAAGATGATGATGATGATGACGATGACGAGGATGATGGTGATGATAGGTCTAGCAATGATGATAACAACCATAATCATGGTTCGCCACAGGAACAAGGAATATCTGGAAGTGACAGATCTCACTCTGATGATTCACATTATGAGGATGAAAGCACTGGGGAAACAATGTTCTCCAATCAAGGAACTTCTCATGATTTCAATGGTATTAGACGAGGGTTTCCTGGGACTTCTACTGAGAGACATGAACCTGAACATGACACTGGAATGGATACAGATGACCCTTTGCATGTCGAGCCAGATGATGTGCATAAACAAACCACTTGTAACCAATACCTTGCAATTCAAGAAGTGTCTGATAAGACAAGCATGATAGCCCATGATCTTGTTGGTCATATGTTGGAGGAGTTTGCACAGAAAGATGGCTTGGATTTGGACTGGGATGATACATTATATCTGAAAGGTGATTGTGCAACTCGAGAAGATTCAGGAGTGGTAGAAGAAAGGCAGACATTGTCTCAGGAGAACAGAGGCGGTTCTGTAATTGTTAGTGTAATTGAGGATCTAATACCTTCATTTCCAAAGAGTGGAATCGAAGCATTAAGGAACTTGGTGGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

650

Amino Acids

73.83

Weight (kDa)

4.85

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 43, 211
Acc36I ACCTGC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 1916
AciI CCGC 2 cut(s) 721, 1863
AclI AACGTT 1 cut(s) 9
AclWI GGATC 1 cut(s) 1899
AcsI RAATTY 4 cut(s) 443, 520, 854, 917
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 4 cut(s) 588, 654, 695, 757
AfiI CCNNNNNNNGG 2 cut(s) 532, 1916
AflIII ACRYGT 1 cut(s) 1164
AjnI CCWGG 3 cut(s) 826, 889, 1552
AjuI GAANNNNNNNTTGG 4 cut(s) 1124, 1156, 1739, 1771
AloI GAACNNNNNNTCC 2 cut(s) 1484, 1516
AluBI AGCT 7 cut(s) 359, 643, 999, 1009, 1062, 1148, 1180
AluI AGCT 7 cut(s) 359, 643, 999, 1009, 1062, 1148, 1180
Alw21I GWGCWC 3 cut(s) 126, 1011, 1246
Alw26I GTCTC 9 cut(s) 29, 51, 197, 567, 611, 836, 899, 1564, 1851
AlwI GGATC 1 cut(s) 1899
Ama87I CYCGRG 1 cut(s) 1806
AoxI GGCC 2 cut(s) 805, 1033
ApeKI GCWGC 3 cut(s) 227, 371, 1180
ApoI RAATTY 4 cut(s) 443, 520, 854, 917
AsuHPI GGTGA 5 cut(s) 341, 889, 1124, 1382, 1805
AvaI CYCGRG 1 cut(s) 1806
BanII GRGCYC 1 cut(s) 1011
BbsI GAAGAC 3 cut(s) 95, 207, 1028
Bbv12I GWGCWC 3 cut(s) 126, 1011, 1246
BbvCI CCTCAGC 1 cut(s) 1305
BbvI GCAGC 3 cut(s) 239, 383, 1167
BccI CCATC 3 cut(s) 587, 1361, 1745
BciT130I CCWGG 3 cut(s) 828, 891, 1554
BciVI GTATCC 2 cut(s) 1114, 1594
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 9 cut(s) 29, 51, 197, 567, 611, 836, 899, 1564, 1851
BfaI CTAG 5 cut(s) 782, 980, 1004, 1295, 1383
BfmI CTRYAG 2 cut(s) 770, 950
BfuAI ACCTGC 1 cut(s) 365
BfuI GTATCC 2 cut(s) 1114, 1594
BglII AGATCT 2 cut(s) 1291, 1448
BisI GCNGC 3 cut(s) 228, 372, 1181
BlsI GCNGC 3 cut(s) 229, 373, 1182
Bme1390I CCNGG 3 cut(s) 828, 891, 1554
BmeT110I CYCGRG 1 cut(s) 1806
BmrFI CCNGG 3 cut(s) 828, 891, 1554
BmrI ACTGGG 2 cut(s) 1497, 1777
BmsI GCATC 2 cut(s) 729, 1030
BmuI ACTGGG 2 cut(s) 1497, 1777
BpiI GAAGAC 3 cut(s) 95, 207, 1028
Bpu10I CCTNAGC 3 cut(s) 179, 1245, 1305
BpuEI CTTGAG 1 cut(s) 620
BsaI GGTCTC 5 cut(s) 29, 51, 611, 836, 899
BsaJI CCNNGG 2 cut(s) 792, 1553
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 1916
Bse1I ACTGG 4 cut(s) 594, 1492, 1597, 1772
Bse3DI GCAATG 4 cut(s) 161, 250, 636, 1393
BseBI CCWGG 3 cut(s) 828, 891, 1554
BseDI CCNNGG 2 cut(s) 792, 1553
BseGI GGATG 8 cut(s) 598, 886, 961, 1207, 1336, 1369, 1483, 1777
BseLI CCNNNNNNNGG 2 cut(s) 532, 1916
BseMI GCAATG 4 cut(s) 161, 250, 636, 1393
BseMII CTCAG 9 cut(s) 62, 111, 193, 606, 680, 1259, 1296, 1557, 1862
BseNI ACTGG 4 cut(s) 594, 1492, 1597, 1772
BseRI GAGGAG 1 cut(s) 1748
BseXI GCAGC 3 cut(s) 239, 383, 1167
BshFI GGCC 2 cut(s) 807, 1035
BsiHKAI GWGCWC 3 cut(s) 126, 1011, 1246
BsiHKCI CYCGRG 1 cut(s) 1806
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 1570
BslI CCNNNNNNNGG 2 cut(s) 532, 1916
BsmAI GTCTC 9 cut(s) 29, 51, 197, 567, 611, 836, 899, 1564, 1851
BsmFI GGGAC 1 cut(s) 1570
BsnI GGCC 2 cut(s) 807, 1035
Bso31I GGTCTC 5 cut(s) 29, 51, 611, 836, 899
BsoBI CYCGRG 1 cut(s) 1806
Bsp1286I GDGCHC 3 cut(s) 126, 1011, 1246
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 2 cut(s) 721, 1863
BspANI GGCC 2 cut(s) 807, 1035
BspCNI CTCAG 9 cut(s) 61, 112, 192, 607, 679, 1258, 1297, 1558, 1861
BspHI TCATGA 2 cut(s) 463, 1522
BspMAI CTGCAG 2 cut(s) 774, 954
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 1899
BspTNI GGTCTC 5 cut(s) 29, 51, 611, 836, 899
BsrDI GCAATG 4 cut(s) 161, 250, 636, 1393
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 4 cut(s) 594, 1492, 1597, 1772
BssECI CCNNGG 2 cut(s) 792, 1553
BssMI GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 3 cut(s) 828, 891, 1554
Bst4CI ACNGT 4 cut(s) 544, 561, 847, 910
Bst6I CTCTTC 3 cut(s) 1106, 1196, 1209
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 4 cut(s) 241, 608, 805, 1001
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 8 cut(s) 598, 886, 961, 1207, 1336, 1369, 1483, 1777
BstKTI GATC 7 cut(s) 193, 557, 715, 1294, 1451, 1714, 1894
BstMAI GTCTC 9 cut(s) 29, 51, 197, 567, 611, 836, 899, 1564, 1851
BstMBI GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
BstMWI GCNNNNNNNGC 2 cut(s) 236, 1624
BstNI CCWGG 3 cut(s) 828, 891, 1554
BstNSI RCATGY 3 cut(s) 243, 1168, 1622
BstSCI CCNGG 3 cut(s) 826, 889, 1552
BstSFI CTRYAG 2 cut(s) 770, 950
BstV1I GCAGC 3 cut(s) 239, 383, 1167
BstV2I GAAGAC 3 cut(s) 95, 207, 1028
BstX2I RGATCY 3 cut(s) 1291, 1448, 1891
BstXI CCANNNNNNTGG 2 cut(s) 793, 1409
BstYI RGATCY 3 cut(s) 1291, 1448, 1891
BsuI GTATCC 2 cut(s) 1114, 1594
BsuRI GGCC 2 cut(s) 807, 1035
BtgI CCRYGG 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 8 cut(s) 598, 886, 961, 1207, 1336, 1369, 1483, 1777
BtsIMutI CAGTG 3 cut(s) 819, 1485, 1590
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 4 cut(s) 241, 608, 805, 1001
CciI TCATGA 2 cut(s) 463, 1522
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 4 cut(s) 587, 653, 694, 756
CviQI GTAC 4 cut(s) 587, 653, 694, 756
DpnI GATC 7 cut(s) 192, 556, 714, 1293, 1450, 1713, 1893
DpnII GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
DrdI GACNNNNNNGTC 2 cut(s) 43, 211
DseDI GACNNNNNNGTC 2 cut(s) 43, 211
Eam1104I CTCTTC 3 cut(s) 1106, 1196, 1209
EarI CTCTTC 3 cut(s) 1106, 1196, 1209
Ecl136II GAGCTC 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 1011
Eco31I GGTCTC 5 cut(s) 29, 51, 611, 836, 899
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 1 cut(s) 1065
Eco88I CYCGRG 1 cut(s) 1806
EcoICRI GAGCTC 1 cut(s) 1009
EcoRII CCWGG 3 cut(s) 826, 889, 1552
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 792
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 1 cut(s) 1570
FauNDI CATATG 2 cut(s) 1312, 1725
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 228, 372, 1181
FokI GGATG 8 cut(s) 605, 873, 968, 1214, 1343, 1376, 1490, 1784
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 3 cut(s) 228, 372, 1181
FspBI CTAG 5 cut(s) 782, 980, 1004, 1295, 1383
GluI GCNGC 3 cut(s) 228, 372, 1181
HaeIII GGCC 2 cut(s) 807, 1035
HapII CCGG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 641
HpaII CCGG 1 cut(s) 167
HphI GGTGA 5 cut(s) 341, 889, 1124, 1382, 1805
HpyAV CCTTC 2 cut(s) 621, 1911
HpyCH4III ACNGT 4 cut(s) 544, 561, 847, 910
HpyCH4IV ACGT 2 cut(s) 9, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 1624
HpySE526I ACGT 2 cut(s) 9, 568
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
LmnI GCTCC 2 cut(s) 236, 1059
Lsp1109I GCAGC 3 cut(s) 239, 383, 1167
LweI GCATC 2 cut(s) 729, 1030
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 5 cut(s) 782, 980, 1004, 1295, 1383
MaeII ACGT 2 cut(s) 9, 568
MalI GATC 7 cut(s) 192, 556, 714, 1293, 1450, 1713, 1893
MboI GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 3 cut(s) 1291, 1448, 1891
MhlI GDGCHC 3 cut(s) 126, 1011, 1246
MlyI GAGTC 1 cut(s) 1182
MmeI TCCRAC 1 cut(s) 1710
MseI TTAA 6 cut(s) 54, 486, 645, 1077, 1196, 1931
MslI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1407, 1458, 1595
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 828, 891, 1554
MunI CAATTG 1 cut(s) 716
MvaI CCWGG 3 cut(s) 828, 891, 1554
MwoI GCNNNNNNNGC 2 cut(s) 236, 1624
NcoI CCATGG 1 cut(s) 792
NdeI CATATG 2 cut(s) 1312, 1725
NdeII GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
NmeAIII GCCGAG 1 cut(s) 1061
NmuCI GTSAC 4 cut(s) 509, 731, 1167, 1442
NspI RCATGY 3 cut(s) 243, 1168, 1622
PaeI GCATGC 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 1806
PagI TCATGA 2 cut(s) 463, 1522
PceI AGGCCT 1 cut(s) 807
PciI ACATGT 1 cut(s) 1164
PfeI GAWTC 9 cut(s) 73, 116, 158, 170, 428, 776, 1463, 1814, 1920
PflFI GACNNNGTC 1 cut(s) 1843
PflMI CCANNNNNTGG 1 cut(s) 1916
PkrI GCNGC 3 cut(s) 229, 373, 1182
PleI GAGTC 1 cut(s) 1182
PpsI GAGTC 1 cut(s) 1182
PscI ACATGT 1 cut(s) 1164
Psp124BI GAGCTC 1 cut(s) 1011
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 826, 889, 1552
PspGI CCWGG 3 cut(s) 826, 889, 1552
PstI CTGCAG 2 cut(s) 774, 954
PsuI RGATCY 3 cut(s) 1291, 1448, 1891
PsyI GACNNNGTC 1 cut(s) 1843
RsaI GTAC 4 cut(s) 588, 654, 695, 757
RsaNI GTAC 4 cut(s) 587, 653, 694, 756
RseI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1407, 1458, 1595
SacI GAGCTC 1 cut(s) 1011
SaqAI TTAA 6 cut(s) 54, 486, 645, 1077, 1196, 1931
SatI GCNGC 3 cut(s) 228, 372, 1181
Sau3AI GATC 7 cut(s) 190, 554, 712, 1291, 1448, 1711, 1891
SchI GAGTC 1 cut(s) 1182
ScrFI CCNGG 3 cut(s) 828, 891, 1554
SduI GDGCHC 3 cut(s) 126, 1011, 1246
SexAI ACCWGGT 1 cut(s) 826
SfaNI GCATC 2 cut(s) 729, 1030
SfcI CTRYAG 2 cut(s) 770, 950
Sfr274I CTCGAG 1 cut(s) 1806
SlaI CTCGAG 1 cut(s) 1806
SmiMI CAYNNNNRTG 6 cut(s) 316, 468, 507, 1407, 1458, 1595
SmlI CTYRAG 2 cut(s) 599, 1806
SmoI CTYRAG 2 cut(s) 599, 1806
SphI GCATGC 1 cut(s) 243
SseBI AGGCCT 1 cut(s) 807
SsiI CCGC 2 cut(s) 721, 1863
SspI AATATT 1 cut(s) 271
SspMI CTAG 5 cut(s) 782, 980, 1004, 1295, 1383
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 3 cut(s) 826, 889, 1552
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 4 cut(s) 544, 561, 847, 910
TaiI ACGT 2 cut(s) 12, 571
TaqI TCGA 8 cut(s) 282, 842, 905, 1011, 1104, 1623, 1807, 1923
TatI WGTACW 2 cut(s) 652, 693
TfiI GAWTC 9 cut(s) 73, 116, 158, 170, 428, 776, 1463, 1814, 1920
Tru1I TTAA 6 cut(s) 54, 486, 645, 1077, 1196, 1931
Tru9I TTAA 6 cut(s) 54, 486, 645, 1077, 1196, 1931
TscAI CASTG 3 cut(s) 819, 1492, 1597
TseFI GTSAC 4 cut(s) 509, 731, 1167, 1442
TseI GCWGC 3 cut(s) 227, 371, 1180
Tsp45I GTSAC 4 cut(s) 509, 731, 1167, 1442
TspDTI ATGAA 9 cut(s) 150, 425, 780, 956, 1218, 1347, 1494, 1590, 1893
TspGWI ACGGA 2 cut(s) 41, 100
TspRI CASTG 3 cut(s) 819, 1492, 1597
Tth111I GACNNNGTC 1 cut(s) 1843
Van91I CCANNNNNTGG 1 cut(s) 1916
XapI RAATTY 4 cut(s) 443, 520, 854, 917
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 3 cut(s) 243, 1168, 1622
XcmI CCANNNNNNNNNTGG 1 cut(s) 1715
XhoI CTCGAG 1 cut(s) 1806
XspI CTAG 5 cut(s) 782, 980, 1004, 1295, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.