RchiOBHm_Chr3g0488621

Protein SET DOMAIN GROUP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009980
Physical Location & Seq
Reverse (-)
36296551 .. 36302653
6103 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1539 bp
ATGGTAGCAACATTGTATGACCAATCATGGCATCAGAGTAAACGACTTAACATGGAGCAAGAAGAAGGCAACCTCGAAAGGCTTCTGAAATGGGCGGCGGAGTGTGGGATATCAGACTCAAAATGTCGCGGGCTTTCGTGTTTGGGCCACTCTCTCGTCGTCTCCTACTTCCATGGCGCAGGCGGGAGAGGTTTGGGCGCTGCTCGTGATCTTGAAAAAGGAGAGTTAGTTCTCAAAGTTCCAAAATGGGCTCTGTTTACAAGGGAAAGTTTGTTGTTGAAAGATGATCAACTCTCTGTTGCTGTCAATGCCCATAGCTCTCTCTCCTCTACCCAGACATTGACGGTTTGTTTACTGTACGAAATGGGTAAAGGGAAGACTTCATGGTGGCACCCTTACCTGATCAATTTGCCGCGCAGTTATGACATTATAGCAACATTTGGTGAATTTGAGAAGCAAGCTATGCAGGTGGACGATGCTATCTGGGCTGCTGATAAGGCCATTTCCAAGGCTGAGTTTGAGTGGAAAGAGACCAATGCACTCATGGAACAACTTAAGCTCAAGCCGCAACTTCGGACATTTAGGGCATGGCTTTGGGCTTCTGCAACTGTATCCTCACGGACGATGCATATACCATGGGATGGAGCTGGGTGTTTATGTCCTGTGGGAGACTTATTTAATTATTCTGCACCTGTAGAAGAATCTGATTTTGAAAATATGGAGCATAGAACACATGACTTGGCCTTACAGGATATCTCTACAGTGAACGGGGAAACTTCGTGTATTCTAGATATGGAGCAGCTTGATTCTGATTCGGGAAGATTAACTGATGGCAGGTTTGAGAACGATGTTGGGGCATATTGCTTCTATGCGAAGAAAAGTTATAGAAAAGGAGAGCAGGTGCTTTTGAGCTATGGAACATACACAAATTTGGAGCTTCTTGAGCACTATGGCTTTCTCTTAAATGAAAATCCAAATGACAAAGTTTTTGTTCCCTTAGAACCAGAAATATATTCCTCTTGTTCATGGCCTAAGGAGTCCCTATATATCCATCAAAGTGGAAAGCCCTCTTTTGCTCTACTTTCGGCTCTGCGATTATGGGCAACCCCAGCAAACCGGCGAAGATCTGTTGGACACCTTGCTTATTCAGGGCTTCAACTCTCAGTTGAAAATGAGTTATTTGTTATGAGATGGATTTCAAACAAGTGTAACAGTACTATGAAGAATCTGCCAACAACTTTTGAAGAAGATAGTCTTCTATTAAGTGTCATTGACAAAATCCAAAATGTTAATGCCCCTTTGGAGTTTGCAAATGTTTCATCTGTATCAACAGATGAGATTTGTACTTTTAGGGCTAATGTTTTGAAGAAGGGAGAAACAGATTCCAAAACACTTGTGTCAGGGAAAATGCAGCGGTCAAGGGAGAGGTGGAAATTAGCTGTCAAGTGGAGGCTTGGTTATAAGAAAATTCTAGTTGATTGTATTTCTGTCTGTGATGAAATGATACGTGTTCTATGTTCTCAAATATCTCATTCCTAA

Protein Analysis

512

Amino Acids

57.93

Weight (kDa)

6.01

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubis-subs-bind PF09273 354 - 491 9.9e-06 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17240 AT5G17240
fragaria_vesca FvH4_1g27420
malus_domestica MD07G1015500.v1.1 MD17G1287300.v1.1
prunus_persica Prupe.3G014000_v2.0.a1
pyrus_communis pycom07g01180 pycom07g01780 pycom07g01830 pycom07g01860
rosa_chinensis RchiOBHm_Chr3g0488621
rosa_laevigata RLG00000022939
rosa_multiflora Rmu_sc0005363.1_g000050
rosa_roxburghii Rroxscaffold_6G00394090
rosa_rugosa Rorug03G0239700 Rorug03G0239800
rosa_samantha Rh3AG288600 Rh3BG325300 Rh3CG322900 Rh3DG321600
rosa_wichuraiana Rw3G025540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1461
AarI CACCTGC 2 cut(s) 457, 889
Acc36I ACCTGC 3 cut(s) 457, 825, 889
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 641
AccII CGCG 2 cut(s) 129, 415
AciI CCGC 7 cut(s) 95, 98, 129, 183, 413, 566, 1414
AcsI RAATTY 3 cut(s) 446, 928, 1467
AfaI GTAC 3 cut(s) 359, 1216, 1345
AfiI CCNNNNNNNGG 1 cut(s) 641
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 1507
AgsI TTSAA 8 cut(s) 215, 280, 713, 1157, 1169, 1200, 1244, 1366
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 8 cut(s) 318, 461, 559, 647, 802, 912, 937, 1439
AluI AGCT 8 cut(s) 318, 461, 559, 647, 802, 912, 937, 1439
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 3 cut(s) 166, 524, 663
AoxI GGCC 4 cut(s) 145, 498, 741, 1028
ApeKI GCWGC 4 cut(s) 200, 488, 799, 1411
ApoI RAATTY 3 cut(s) 446, 928, 1467
ArsI GACNNNNNNTTYG 2 cut(s) 971, 1003
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 3 cut(s) 179, 200, 417
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 253
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 383, 1247
Bbv12I GWGCWC 1 cut(s) 948
BbvI GCAGC 4 cut(s) 187, 475, 811, 1423
BccI CCATC 4 cut(s) 635, 824, 1059, 1185
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 2 cut(s) 286, 402
BcoDI GTCTC 3 cut(s) 166, 524, 663
BfaI CTAG 2 cut(s) 788, 1472
BfmI CTRYAG 2 cut(s) 693, 759
BfoI RGCGCY 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 554
BfuAI ACCTGC 3 cut(s) 457, 825, 889
BfuI GTATCC 1 cut(s) 622
BglII AGATCT 1 cut(s) 1124
BisI GCNGC 7 cut(s) 96, 201, 413, 489, 566, 800, 1412
BlsI GCNGC 7 cut(s) 97, 202, 414, 490, 567, 801, 1413
BmcAI AGTACT 1 cut(s) 1216
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 392
BmsI GCATC 3 cut(s) 40, 466, 615
BpiI GAAGAC 2 cut(s) 383, 1247
BpuEI CTTGAG 2 cut(s) 545, 962
BsaAI YACGTR 1 cut(s) 1508
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 172, 507, 635
BsaXI ACNNNNNCTCC 6 cut(s) 213, 243, 885, 915, 1441, 1471
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 1 cut(s) 1116
Bse21I CCTNAGG 1 cut(s) 1032
BseDI CCNNGG 3 cut(s) 172, 507, 635
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 504, 1176
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 4 cut(s) 187, 475, 811, 1423
BseYI CCCAGC 2 cut(s) 647, 1108
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 2 cut(s) 129, 415
BshFI GGCC 4 cut(s) 147, 500, 743, 1030
BshNI GGYRCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 948
BsiSI CCGG 1 cut(s) 1117
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 3 cut(s) 166, 524, 663
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 4 cut(s) 147, 500, 743, 1030
Bso31I GGTCTC 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 253, 948
Bsp143I GATC 4 cut(s) 208, 286, 402, 1124
Bsp19I CCATGG 2 cut(s) 172, 635
BspACI CCGC 7 cut(s) 95, 98, 129, 183, 413, 566, 1414
BspANI GGCC 4 cut(s) 147, 500, 743, 1030
BspCNI CTCAG 2 cut(s) 505, 1175
BspFNI CGCG 2 cut(s) 129, 415
BspLI GGNNCC 1 cut(s) 392
BspMI ACCTGC 3 cut(s) 457, 825, 889
BspT107I GGYRCC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 1116
BssAI RCCGGY 1 cut(s) 1116
BssECI CCNNGG 3 cut(s) 172, 507, 635
BssMI GATC 4 cut(s) 208, 286, 402, 1124
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 3 cut(s) 172, 507, 635
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 5 cut(s) 346, 357, 610, 763, 1214
BstAFI CTTAAG 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 463
BstBAI YACGTR 1 cut(s) 1508
BstC8I GCNNGC 3 cut(s) 131, 181, 459
BstDEI CTNAG 4 cut(s) 513, 997, 1032, 1162
BstDSI CCRYGG 2 cut(s) 172, 635
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 2 cut(s) 129, 415
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 3 cut(s) 179, 200, 417
BstKTI GATC 4 cut(s) 211, 289, 405, 1127
BstMAI GTCTC 3 cut(s) 166, 524, 663
BstMBI GATC 4 cut(s) 208, 286, 402, 1124
BstMWI GCNNNNNNNGC 7 cut(s) 308, 463, 485, 497, 565, 943, 1109
BstSFI CTRYAG 2 cut(s) 693, 759
BstUI CGCG 2 cut(s) 129, 415
BstV1I GCAGC 4 cut(s) 187, 475, 811, 1423
BstV2I GAAGAC 2 cut(s) 383, 1247
BstX2I RGATCY 1 cut(s) 1124
BstXI CCANNNNNNTGG 1 cut(s) 1058
BstYI RGATCY 1 cut(s) 1124
Bsu36I CCTNAGG 1 cut(s) 1032
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 4 cut(s) 147, 500, 743, 1030
BtgI CCRYGG 2 cut(s) 172, 635
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 3 cut(s) 457, 825, 889
Cac8I GCNNGC 3 cut(s) 131, 181, 459
CfoI GCGC 3 cut(s) 179, 200, 417
Cfr10I RCCGGY 1 cut(s) 1116
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 3 cut(s) 358, 1215, 1344
CviAII CATG 9 cut(s) 27, 52, 173, 384, 544, 588, 636, 734, 1026
CviQI GTAC 3 cut(s) 358, 1215, 1344
DdeI CTNAG 4 cut(s) 513, 997, 1032, 1162
DpnI GATC 4 cut(s) 210, 288, 404, 1126
DpnII GATC 4 cut(s) 208, 286, 402, 1124
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 3 cut(s) 172, 507, 635
Eco24I GRGCYC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 524
Eco32I GATATC 2 cut(s) 111, 754
Eco81I CCTNAGG 1 cut(s) 1032
EcoRV GATATC 2 cut(s) 111, 754
EcoT14I CCWWGG 3 cut(s) 172, 507, 635
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 3 cut(s) 172, 507, 635
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 9 cut(s) 30, 55, 176, 387, 547, 591, 639, 737, 1029
FalI AAGNNNNNCTT 2 cut(s) 1239, 1271
FaqI GGGAC 1 cut(s) 1024
FatI CATG 9 cut(s) 26, 51, 172, 383, 543, 587, 635, 733, 1025
FauI CCCGC 2 cut(s) 122, 176
FbaI TGATCA 2 cut(s) 286, 402
Fnu4HI GCNGC 7 cut(s) 96, 201, 413, 489, 566, 800, 1412
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 7 cut(s) 96, 201, 413, 489, 566, 800, 1412
FspBI CTAG 2 cut(s) 788, 1472
GlaI GCGC 3 cut(s) 178, 199, 416
GluI GCNGC 7 cut(s) 96, 201, 413, 489, 566, 800, 1412
GsaI CCCAGC 2 cut(s) 651, 1112
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 4 cut(s) 147, 500, 743, 1030
HapII CCGG 1 cut(s) 1117
HhaI GCGC 3 cut(s) 179, 200, 417
Hin1II CATG 9 cut(s) 30, 55, 176, 387, 547, 591, 639, 737, 1029
Hin6I GCGC 3 cut(s) 177, 198, 415
HinP1I GCGC 3 cut(s) 177, 198, 415
HinfI GANTC 7 cut(s) 116, 701, 806, 812, 1037, 1225, 1382
HpaII CCGG 1 cut(s) 1117
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 5 cut(s) 41, 258, 353, 472, 766
Hpy188I TCNGA 6 cut(s) 36, 87, 115, 576, 706, 811
Hpy188III TCNNGA 5 cut(s) 206, 212, 788, 816, 941
Hpy8I GTNNAC 5 cut(s) 41, 258, 353, 472, 766
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 59, 1363
HpyCH4III ACNGT 5 cut(s) 346, 357, 610, 763, 1214
HpyCH4IV ACGT 1 cut(s) 1507
HpyCH4V TGCA 7 cut(s) 466, 539, 605, 628, 689, 1310, 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 308, 463, 485, 497, 565, 943, 1109
HpyF3I CTNAG 4 cut(s) 513, 997, 1032, 1162
HpySE526I ACGT 1 cut(s) 1507
Hsp92II CATG 9 cut(s) 30, 55, 176, 387, 547, 591, 639, 737, 1029
HspAI GCGC 3 cut(s) 177, 198, 415
Ksp22I TGATCA 2 cut(s) 286, 402
Kzo9I GATC 4 cut(s) 208, 286, 402, 1124
LmnI GCTCC 5 cut(s) 55, 644, 721, 796, 934
Lsp1109I GCAGC 4 cut(s) 187, 475, 811, 1423
LweI GCATC 3 cut(s) 40, 466, 615
MaeI CTAG 2 cut(s) 788, 1472
MaeII ACGT 1 cut(s) 1507
MaeIII GTNAC 1 cut(s) 1208
MalI GATC 4 cut(s) 210, 288, 404, 1126
MboI GATC 4 cut(s) 208, 286, 402, 1124
MflI RGATCY 1 cut(s) 1124
MhlI GDGCHC 2 cut(s) 253, 948
MluCI AATT 6 cut(s) 406, 446, 679, 928, 1433, 1467
MlyI GAGTC 2 cut(s) 110, 1046
MmeI TCCRAC 1 cut(s) 1111
MnlI CCTC 8 cut(s) 83, 182, 337, 625, 1027, 1078, 1419, 1443
Mph1103I ATGCAT 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 7 cut(s) 48, 555, 678, 824, 962, 1262, 1290
MslI CAYNNNNRTG 1 cut(s) 1056
MspA1I CMGCKG 1 cut(s) 1414
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 1 cut(s) 1117
MvnI CGCG 2 cut(s) 129, 415
MwoI GCNNNNNNNGC 7 cut(s) 308, 463, 485, 497, 565, 943, 1109
NcoI CCATGG 2 cut(s) 172, 635
NdeII GATC 4 cut(s) 208, 286, 402, 1124
NlaIII CATG 9 cut(s) 30, 55, 176, 387, 547, 591, 639, 737, 1029
NlaIV GGNNCC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 630
PaqCI CACCTGC 2 cut(s) 457, 889
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 5 cut(s) 701, 806, 812, 1225, 1382
PflMI CCANNNNNTGG 1 cut(s) 641
PkrI GCNGC 7 cut(s) 97, 202, 414, 490, 567, 801, 1413
PleI GAGTC 2 cut(s) 110, 1045
PpsI GAGTC 2 cut(s) 110, 1045
Ppu21I YACGTR 1 cut(s) 1508
PsiI TTATAA 1 cut(s) 1461
PspFI CCCAGC 2 cut(s) 647, 1108
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 1124
RsaI GTAC 3 cut(s) 359, 1216, 1345
RsaNI GTAC 3 cut(s) 358, 1215, 1344
RseI CAYNNNNRTG 1 cut(s) 1056
SaqAI TTAA 7 cut(s) 48, 555, 678, 824, 962, 1262, 1290
SatI GCNGC 7 cut(s) 96, 201, 413, 489, 566, 800, 1412
Sau3AI GATC 4 cut(s) 208, 286, 402, 1124
Sau96I GGNCC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 1216
SchI GAGTC 2 cut(s) 110, 1046
SduI GDGCHC 2 cut(s) 253, 948
SfaNI GCATC 3 cut(s) 40, 466, 615
SfcI CTRYAG 2 cut(s) 693, 759
SmiMI CAYNNNNRTG 1 cut(s) 1056
SmlI CTYRAG 3 cut(s) 554, 560, 941
SmoI CTYRAG 3 cut(s) 554, 560, 941
Sse9I AATT 6 cut(s) 406, 446, 679, 928, 1433, 1467
SsiI CCGC 7 cut(s) 95, 98, 129, 183, 413, 566, 1414
SspMI CTAG 2 cut(s) 788, 1472
StyI CCWWGG 3 cut(s) 172, 507, 635
TaaI ACNGT 5 cut(s) 346, 357, 610, 763, 1214
TaiI ACGT 1 cut(s) 1510
TaqI TCGA 1 cut(s) 75
TasI AATT 6 cut(s) 406, 446, 679, 928, 1433, 1467
TatI WGTACW 2 cut(s) 1214, 1343
TauI GCSGC 3 cut(s) 98, 415, 568
TfiI GAWTC 5 cut(s) 701, 806, 812, 1225, 1382
Tru1I TTAA 7 cut(s) 48, 555, 678, 824, 962, 1262, 1290
Tru9I TTAA 7 cut(s) 48, 555, 678, 824, 962, 1262, 1290
TscAI CASTG 1 cut(s) 768
TseI GCWGC 4 cut(s) 200, 488, 799, 1411
TspDTI ATGAA 6 cut(s) 372, 981, 1014, 1235, 1308, 1512
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 641
Vha464I CTTAAG 1 cut(s) 554
XapI RAATTY 3 cut(s) 446, 928, 1467
XbaI TCTAGA 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 788, 1472
ZrmI AGTACT 1 cut(s) 1216
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.