Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

2162682 .. 2163506

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGAGGCATGCCAAACTGTTTTTTGTAGATCAGAGAGATGTAATGTTGCTAAAGGAATCCCTATCTTTTACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATAAGGAGGCTCTGAACTTTCTGAATGATATCGAGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACGATCGTAATCCTTATTTTAAGAATAAGGTGTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGGACTAAAATTGACTGGTATCCTTCTCAAAACTTAACACAGGGTAAAAGCAGTGAAAGTTTCTTCAAGTTCTTTAATTCATATGCTTCTCTCGATCCTCTTTCTTTTGACAACGAAGCTGTAAGTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

142

Amino Acids

16.46

Weight (kDa)

5.9

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	25 - 112	1.3e-22	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	178, 286, 361
AhdI	GACNNNNNGTC	1 cut(s)	271
AluBI	AGCT	2 cut(s)	190, 413
AluI	AGCT	2 cut(s)	190, 413
AlwI	GGATC	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AsuHPI	GGTGA	3 cut(s)	16, 190, 268
BccI	CCATC	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	271, 314
Bse3DI	GCAATG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	213
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	271, 314
Bsh1285I	CGRYCG	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	142, 310
BsmFI	GGGAC	2 cut(s)	142, 310
Bsp143I	GATC	3 cut(s)	31, 208, 388
BspPI	GGATC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	271, 314
BssMI	GATC	3 cut(s)	31, 208, 388
Bst4CI	ACNGT	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	34, 211, 391
BstMBI	GATC	3 cut(s)	31, 208, 388
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	12
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	3 cut(s)	131, 190, 413
CviKI_1	RGCY	3 cut(s)	131, 190, 413
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	33, 210, 390
DpnII	GATC	3 cut(s)	31, 208, 388
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	151
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 252, 376, 378
FaqI	GGGAC	2 cut(s)	142, 310
FatI	CATG	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	376
FokI	GGATG	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	212
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	59, 155
HphI	GGTGA	3 cut(s)	16, 190, 268
Hpy166II	GTNNAC	2 cut(s)	198, 240
Hpy188I	TCNGA	3 cut(s)	36, 135, 144
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	2 cut(s)	198, 240
HpyAV	CCTTC	3 cut(s)	253, 280, 327
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	77, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	31, 208, 388
LpnPI	CCDG	4 cut(s)	176, 284, 295, 320
MalI	GATC	3 cut(s)	33, 210, 390
MboI	GATC	3 cut(s)	31, 208, 388
MboII	GAAGA	1 cut(s)	349
MluCI	AATT	2 cut(s)	303, 370
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	121, 247, 402
MseI	TTAA	3 cut(s)	225, 329, 369
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	31, 208, 388
NlaIII	CATG	1 cut(s)	14
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	59
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	225, 329, 369
Sau3AI	GATC	3 cut(s)	31, 208, 388
SchI	GAGTC	1 cut(s)	164
SetI	ASST	5 cut(s)	192, 203, 237, 258, 415
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	303, 370
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	153, 387
TasI	AATT	2 cut(s)	303, 370
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	225, 329, 369
Tru9I	TTAA	3 cut(s)	225, 329, 369
TscAI	CASTG	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	270, 363
TspRI	CASTG	1 cut(s)	352
XceI	RCATGY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.