RchiOBHm_Chr3g0447701

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012686
Physical Location & Seq
Forward (+)
302385 .. 306513
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41516

Sequence Viewer

Length: 927 bp
ATGGCCCAATCATCAACCAGTGGAAAGAGGGCAAAAACATCCATCCACGATGACGTCTCCGGCAACGACGCCGCCGCAATTGAAGCCTACAAGACTTACGTACGGGTGATGTCTTGCATTCCCCCAACCCACTTCAAAGAGATGGAGAAAACCAAACCAGAGAGTATGCGTAAACTTAAGTTGAGCCTCGAATCCAGGGACCGACTGAAAGAGATACATGCTGACATCGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCAGATAACCGGGATCTCTATACTGACATGAATCAGTTTTTTGTCAAAAGATGTCAATGGGAAACTGATTTTAAGGAAATCCACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGCCTTTTGGCTTACTGCAATGATTGCTAACAAGACACTTTATAAGCAGATTGCAGAGAGAGATACAAAGGCTTTGTACTTTCTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGGCGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCTGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTAAAAAATTGACGCAGCAGAGTGGTAAAAGCAATGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTGTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCGACGGATTATTTAATTGGTACCAAGTTTCGGGACAAGATCATTCCACATGCTATTTCCTGGCATGCATTTTCAGAACACGATGATAGTGACTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGGTGGTAG

Protein Analysis

308

Amino Acids

35.84

Weight (kDa)

6.28

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 102 - 284 6e-35 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AatII GACGTC 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 806
AciI CCGC 2 cut(s) 72, 75
AclWI GGATC 2 cut(s) 294, 734
AcuI CTGAAG 1 cut(s) 557
AcyI GRCGYC 2 cut(s) 54, 69
AfaI GTAC 3 cut(s) 102, 482, 808
AfiI CCNNNNNNNGG 2 cut(s) 790, 816
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 83, 136, 523, 631
AhdI GACNNNNNGTC 1 cut(s) 616
AjnI CCWGG 2 cut(s) 194, 845
AluBI AGCT 2 cut(s) 535, 764
AluI AGCT 2 cut(s) 535, 764
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 294, 734
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 389, 679
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp718I GGTACC 1 cut(s) 806
AspS9I GGNCC 2 cut(s) 4, 199
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 118, 535, 613
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 376, 691
BccI CCATC 3 cut(s) 50, 136, 261
BciT130I CCWGG 2 cut(s) 196, 847
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 504
BfrI CTTAAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 4 cut(s) 72, 75, 390, 680
BlsI GCNGC 4 cut(s) 73, 76, 391, 681
Bme1390I CCNGG 3 cut(s) 196, 284, 847
Bme18I GGWCC 1 cut(s) 199
BmeRI GACNNNNNGTC 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 4, 199
BmiI GGNNCC 2 cut(s) 200, 808
BmrFI CCNGG 3 cut(s) 196, 284, 847
BplI GAGNNNNNCTC 1 cut(s) 899
BpuEI CTTGAG 1 cut(s) 901
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 2 cut(s) 54, 69
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 790, 816
Bse1I ACTGG 2 cut(s) 18, 659
Bse3DI GCAATG 2 cut(s) 429, 703
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 196, 847
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 38, 42
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 790, 816
BseMI GCAATG 2 cut(s) 429, 703
BseNI ACTGG 2 cut(s) 18, 659
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 376, 691
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 806
BsiSI CCGG 2 cut(s) 60, 283
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 4 cut(s) 212, 386, 655, 833
BslI CCNNNNNNNGG 2 cut(s) 790, 816
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 4 cut(s) 212, 386, 655, 833
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 286, 553, 739, 825
BspACI CCGC 2 cut(s) 72, 75
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 200, 808
BspPI GGATC 2 cut(s) 294, 734
BspT107I GGYRCC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 429, 703
BsrI ACTGG 2 cut(s) 18, 659
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 4 cut(s) 286, 553, 739, 825
BssNI GRCGYC 2 cut(s) 54, 69
Bst2UI CCWGG 2 cut(s) 196, 847
Bst4CI ACNGT 2 cut(s) 736, 893
BstACI GRCGYC 2 cut(s) 54, 69
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 852
BstF5I GGATG 2 cut(s) 38, 42
BstKTI GATC 4 cut(s) 289, 556, 742, 828
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 286, 553, 739, 825
BstMWI GCNNNNNNNGC 2 cut(s) 83, 428
BstNI CCWGG 2 cut(s) 196, 847
BstNSI RCATGY 3 cut(s) 221, 839, 854
BstSCI CCNGG 3 cut(s) 194, 282, 845
BstSNI TACGTA 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 376, 691
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 38, 42
BtsIMutI CAGTG 2 cut(s) 25, 898
Cac8I GCNNGC 1 cut(s) 852
Cfr13I GGNCC 2 cut(s) 4, 199
CseI GACGC 2 cut(s) 77, 685
Csp6I GTAC 3 cut(s) 101, 481, 807
CviAII CATG 4 cut(s) 218, 301, 836, 851
CviJI RGCY 9 cut(s) 5, 86, 186, 242, 364, 415, 476, 535, 764
CviKI_1 RGCY 9 cut(s) 5, 86, 186, 242, 364, 415, 476, 535, 764
CviQI GTAC 3 cut(s) 101, 481, 807
DpnI GATC 4 cut(s) 288, 555, 741, 827
DpnII GATC 4 cut(s) 286, 553, 739, 825
DriI GACNNNNNGTC 1 cut(s) 616
Eam1105I GACNNNNNGTC 1 cut(s) 616
Eco105I TACGTA 1 cut(s) 100
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 194, 845
EcoRV GATATC 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 856
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 4 cut(s) 221, 304, 839, 854
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 768, 800
FaqI GGGAC 4 cut(s) 212, 386, 655, 833
FatI CATG 4 cut(s) 217, 300, 835, 850
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 4 cut(s) 72, 75, 390, 680
FokI GGATG 2 cut(s) 25, 29
Fsp4HI GCNGC 4 cut(s) 72, 75, 390, 680
FspBI CTAG 1 cut(s) 504
GluI GCNGC 4 cut(s) 72, 75, 390, 680
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 60, 283
HgaI GACGC 2 cut(s) 77, 685
Hin1I GRCGYC 2 cut(s) 54, 69
Hin1II CATG 4 cut(s) 221, 304, 839, 854
HinfI GANTC 5 cut(s) 191, 304, 399, 500, 617
HpaII CCGG 2 cut(s) 60, 283
HphI GGTGA 3 cut(s) 118, 535, 613
Hpy166II GTNNAC 2 cut(s) 173, 543
Hpy188I TCNGA 3 cut(s) 489, 789, 862
Hpy188III TCNNGA 1 cut(s) 818
Hpy8I GTNNAC 2 cut(s) 173, 543
Hpy99I CGWCG 2 cut(s) 71, 793
HpyAV CCTTC 3 cut(s) 625, 672, 794
HpyCH4III ACNGT 2 cut(s) 736, 893
HpyCH4IV ACGT 2 cut(s) 54, 99
HpyCH4V TGCA 4 cut(s) 117, 422, 458, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 428
HpySE526I ACGT 2 cut(s) 54, 99
Hsp92I GRCGYC 2 cut(s) 54, 69
Hsp92II CATG 4 cut(s) 221, 304, 839, 854
KpnI GGTACC 1 cut(s) 810
Kzo9I GATC 4 cut(s) 286, 553, 739, 825
Lsp1109I GCAGC 2 cut(s) 376, 691
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 54, 99
MaeIII GTNAC 1 cut(s) 875
MalI GATC 4 cut(s) 288, 555, 741, 827
MboI GATC 4 cut(s) 286, 553, 739, 825
MboII GAAGA 1 cut(s) 911
MfeI CAATTG 3 cut(s) 78, 513, 636
MflI RGATCY 1 cut(s) 286
MluCI AATT 5 cut(s) 78, 513, 636, 671, 801
MlyI GAGTC 3 cut(s) 408, 509, 626
MmeI TCCRAC 1 cut(s) 812
MnlI CCTC 8 cut(s) 21, 197, 229, 247, 254, 375, 592, 753
Mph1103I ATGCAT 1 cut(s) 856
MseI TTAA 7 cut(s) 177, 345, 359, 570, 584, 711, 800
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 60, 283
MspR9I CCNGG 3 cut(s) 196, 284, 847
MunI CAATTG 3 cut(s) 78, 513, 636
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 196, 847
MwoI GCNNNNNNNGC 2 cut(s) 83, 428
NciI CCSGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 727
NdeII GATC 4 cut(s) 286, 553, 739, 825
NlaIII CATG 4 cut(s) 221, 304, 839, 854
NlaIV GGNNCC 2 cut(s) 200, 808
NmuCI GTSAC 1 cut(s) 875
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 3 cut(s) 221, 839, 854
PaeI GCATGC 1 cut(s) 854
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 191, 304
Pfl23II CGTACG 1 cut(s) 100
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 4 cut(s) 73, 76, 391, 681
PleI GAGTC 3 cut(s) 407, 508, 625
PpsI GAGTC 3 cut(s) 407, 508, 625
Ppu21I YACGTR 1 cut(s) 100
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 194, 845
PspGI CCWGG 2 cut(s) 194, 845
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 200, 808
PspPI GGNCC 2 cut(s) 4, 199
PsuI RGATCY 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 3 cut(s) 102, 482, 808
RsaNI GTAC 3 cut(s) 101, 481, 807
SaqAI TTAA 7 cut(s) 177, 345, 359, 570, 584, 711, 800
SatI GCNGC 4 cut(s) 72, 75, 390, 680
Sau3AI GATC 4 cut(s) 286, 553, 739, 825
Sau96I GGNCC 2 cut(s) 4, 199
SchI GAGTC 3 cut(s) 408, 509, 626
ScrFI CCNGG 3 cut(s) 196, 284, 847
SetI ASST 8 cut(s) 57, 102, 537, 548, 603, 766, 786, 923
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 176, 916
SmoI CTYRAG 2 cut(s) 176, 916
SnaBI TACGTA 1 cut(s) 100
SphI GCATGC 1 cut(s) 854
Sse9I AATT 5 cut(s) 78, 513, 636, 671, 801
SsiI CCGC 2 cut(s) 72, 75
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 194, 282, 845
TaaI ACNGT 2 cut(s) 736, 893
TaiI ACGT 2 cut(s) 57, 102
TaqI TCGA 3 cut(s) 189, 498, 738
TaqII GACCGA 1 cut(s) 216
TasI AATT 5 cut(s) 78, 513, 636, 671, 801
TatI WGTACW 1 cut(s) 480
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 2 cut(s) 191, 304
Tru1I TTAA 7 cut(s) 177, 345, 359, 570, 584, 711, 800
Tru9I TTAA 7 cut(s) 177, 345, 359, 570, 584, 711, 800
TscAI CASTG 2 cut(s) 25, 898
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 2 cut(s) 389, 679
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 6 cut(s) 317, 387, 714, 714, 783, 912
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 25, 898
Tth111I GACNNNGTC 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 3 cut(s) 221, 839, 854
XspI CTAG 1 cut(s) 504
ZraI GACGTC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.