Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Reverse (-)

90350259 .. 90352761

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAATCAGTTTTTTGTCGAAAGATGTCAATGGGAAACTGAGTTTAAGGAAAACCACTTAAAGCCTCTCTATGAAGTGAGATGTAATGTCGCTAAAGGAATCCCTAGCTTTTGGCATACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATAAGGAGGCTCTGAACTTTCTGAATGATATCGAGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACAATCGTAATCCTTATTTTAAGAATAAGGTCTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGGACTAAAATAGACTGGTATCCTTCTCAAAACTTAACACAGGGTAAAAGCAGTGAAAGTTTCTTCAAGTTCTTTAATTCATATGCTTCTCTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTTAAAGGCGACATTCCGACGGATTATGTAATTGGTACCAAGTTTCGAGACAAGATCATTCCGCATGCTATAACATGGTATAAATTTGCAGAGAAGGATGATAGTGATTATGATGATAGTGATGGCGAATGTGAGCGTTGCTCAAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

205

Amino Acids

24.12

Weight (kDa)

5.38

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	25 - 182	5.6e-36	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	500
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	548
AfaI	GTAC	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	223, 331, 406
AhdI	GACNNNNNGTC	1 cut(s)	316
AluBI	AGCT	3 cut(s)	108, 235, 458
AluI	AGCT	3 cut(s)	108, 235, 458
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp718I	GGTACC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	235, 313
BanI	GGYRCC	1 cut(s)	500
BccI	CCATC	2 cut(s)	133, 581
BciVI	GTATCC	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	502
BplI	GAGNNNNNCTC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	592
Bse1I	ACTGG	2 cut(s)	316, 359
Bse3DI	GCAATG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	313, 568
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	316, 359
BshNI	GGYRCC	1 cut(s)	500
BslFI	GGGAC	2 cut(s)	187, 355
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	187, 355
Bsp143I	GATC	2 cut(s)	433, 519
BspACI	CCGC	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	502
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	316, 359
BssMI	GATC	2 cut(s)	433, 519
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	39, 147
BstF5I	GGATG	2 cut(s)	313, 568
BstKTI	GATC	2 cut(s)	436, 522
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	2 cut(s)	433, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	313, 568
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	2 cut(s)	530, 540
CviJI	RGCY	5 cut(s)	64, 108, 176, 235, 458
CviKI_1	RGCY	5 cut(s)	64, 108, 176, 235, 458
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	2 cut(s)	39, 147
DpnI	GATC	2 cut(s)	435, 521
DpnII	GATC	2 cut(s)	433, 519
DriI	GACNNNNNGTC	1 cut(s)	316
Eam1105I	GACNNNNNGTC	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	196
FaeI	CATG	2 cut(s)	533, 543
FaqI	GGGAC	2 cut(s)	187, 355
FatI	CATG	2 cut(s)	529, 539
FauNDI	CATATG	1 cut(s)	421
FokI	GGATG	2 cut(s)	320, 575
FspBI	CTAG	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	533, 543
HinfI	GANTC	3 cut(s)	4, 99, 200
HphI	GGTGA	2 cut(s)	235, 313
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	180, 189, 483
Hpy188III	TCNNGA	3 cut(s)	283, 431, 512
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	298, 325, 372, 553
HpyCH4V	TGCA	3 cut(s)	122, 158, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	39, 147
Hsp92II	CATG	2 cut(s)	533, 543
KpnI	GGTACC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	433, 519
LpnPI	CCDG	4 cut(s)	221, 329, 340, 365
MaeI	CTAG	1 cut(s)	105
MalI	GATC	2 cut(s)	435, 521
MboI	GATC	2 cut(s)	433, 519
MboII	GAAGA	1 cut(s)	394
MluCI	AATT	3 cut(s)	415, 495, 548
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	4 cut(s)	75, 166, 292, 447
MseI	TTAA	6 cut(s)	45, 59, 270, 374, 414, 468
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	2 cut(s)	433, 519
NlaIII	CATG	2 cut(s)	533, 543
NlaIV	GGNNCC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	4, 99
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	502
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SaqAI	TTAA	6 cut(s)	45, 59, 270, 374, 414, 468
Sau3AI	GATC	2 cut(s)	433, 519
SchI	GAGTC	1 cut(s)	209
SetI	ASST	7 cut(s)	110, 237, 248, 282, 303, 460, 614
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	3 cut(s)	415, 495, 548
SsiI	CCGC	1 cut(s)	527
SspMI	CTAG	1 cut(s)	105
TaqI	TCGA	4 cut(s)	18, 198, 432, 511
TasI	AATT	3 cut(s)	415, 495, 548
TfiI	GAWTC	2 cut(s)	4, 99
Tru1I	TTAA	6 cut(s)	45, 59, 270, 374, 414, 468
Tru9I	TTAA	6 cut(s)	45, 59, 270, 374, 414, 468
TscAI	CASTG	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	17, 87, 315, 408, 477
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.