Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

1895695 .. 1898351

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGACTCTATCAGTGCAAAGAGGGCAAAGAGATCGATCCAGGATGATGTCTCCGACGACGACGACGACGCCGCCGCAAGAGAAGCCTTCAAGAATATGGCTGACATTGTCAAGGAGGAACACCTGTTTGTTGAGGAGAGAAAGAAATGGGTGGCGGATAACCGGAGTCTCTATAGTGACATGAATCAGTTTTTTGTCGAAAGATGTCAATGGGAAACTGAGTTTAAGGAAAACCACTTAAAGCCTCTCTATGAAGAGAGATGTAATGTTGCTAAAGGAATCCCTAACTTTTGGCATACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATAAGGAGGCTCTGAACTTTCTGAATGATATCGAGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACGATCGTAATCCTTATTTTAAGAATAAGGTCTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGGACTAAAATAGACTGGTATCCTTCTCAAAACTTAACACAGGGTAAAAGCAGTGAAAGTTTCTTCAAGTTCTTTAATTCATATGCTTCTCTCGATCCTCTTTCTTTTGACAAAGAAGCTGTAAGTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

218

Amino Acids

25.45

Weight (kDa)

5.21

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	30 - 189	2.1e-25	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 75, 78, 158
AclWI	GGATC	2 cut(s)	34, 611
AcyI	GRCGYC	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	94, 406, 514, 589
AhdI	GACNNNNNGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	2 cut(s)	418, 641
AluI	AGCT	2 cut(s)	418, 641
Alw26I	GTCTC	2 cut(s)	58, 176
AlwI	GGATC	2 cut(s)	34, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
AsuHPI	GGTGA	2 cut(s)	418, 496
BccI	CCATC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	58, 176
BfmI	CTRYAG	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	552
BisI	GCNGC	2 cut(s)	75, 78
BlsI	GCNGC	2 cut(s)	76, 79
Bme1390I	CCNGG	1 cut(s)	44
BmeRI	GACNNNNNGTC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	499, 542
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	2 cut(s)	52, 496
BseJI	GATNNNNATC	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	499, 542
BseRI	GAGGAG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	370, 538
BsmAI	GTCTC	2 cut(s)	58, 176
BsmFI	GGGAC	2 cut(s)	370, 538
Bsp143I	GATC	4 cut(s)	35, 39, 436, 616
BspACI	CCGC	4 cut(s)	5, 75, 78, 158
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	38
BspPI	GGATC	2 cut(s)	34, 611
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	499, 542
BssMI	GATC	4 cut(s)	35, 39, 436, 616
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	222, 330
BstF5I	GGATG	2 cut(s)	52, 496
BstKTI	GATC	4 cut(s)	38, 42, 439, 619
BstMAI	GTCTC	2 cut(s)	58, 176
BstMBI	GATC	4 cut(s)	35, 39, 436, 616
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 86, 311
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	52, 496
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	22, 580
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	89, 104, 247, 359, 418, 641
CviKI_1	RGCY	6 cut(s)	89, 104, 247, 359, 418, 641
DdeI	CTNAG	2 cut(s)	222, 330
DpnI	GATC	4 cut(s)	37, 41, 438, 618
DpnII	GATC	4 cut(s)	35, 39, 436, 616
DriI	GACNNNNNGTC	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	252
Eam1105I	GACNNNNNGTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	2 cut(s)	20, 173
Eco32I	GATATC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	379
FaeI	CATG	1 cut(s)	187
FaiI	YATR	8 cut(s)	101, 177, 185, 255, 300, 480, 604, 606
FaqI	GGGAC	2 cut(s)	370, 538
FatI	CATG	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	75, 78
FokI	GGATG	2 cut(s)	59, 503
Fsp4HI	GCNGC	2 cut(s)	75, 78
GluI	GCNGC	2 cut(s)	75, 78
GsuI	CTGGAG	1 cut(s)	440
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	5 cut(s)	8, 169, 187, 282, 383
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	418, 496
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	3 cut(s)	58, 363, 372
Hpy188III	TCNNGA	3 cut(s)	94, 466, 614
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 71, 74
HpyAV	CCTTC	4 cut(s)	100, 481, 508, 555
HpyCH4V	TGCA	3 cut(s)	20, 305, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 86, 311
HpyF3I	CTNAG	2 cut(s)	222, 330
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	35, 39, 436, 616
LpnPI	CCDG	8 cut(s)	29, 56, 140, 179, 404, 512, 523, 548
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	37, 41, 438, 618
MboI	GATC	4 cut(s)	35, 39, 436, 616
MboII	GAAGA	2 cut(s)	269, 577
MluCI	AATT	1 cut(s)	598
MlyI	GAGTC	3 cut(s)	2, 178, 392
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	18, 112, 130, 258, 349, 475, 630
MseI	TTAA	5 cut(s)	228, 242, 453, 557, 597
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	26, 86, 311
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	4 cut(s)	35, 39, 436, 616
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	187, 282
PflFI	GACNNNGTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	76, 79
Ple19I	CGATCG	1 cut(s)	439
PleI	GAGTC	3 cut(s)	2, 177, 391
PpsI	GAGTC	3 cut(s)	2, 177, 391
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	439
SaqAI	TTAA	5 cut(s)	228, 242, 453, 557, 597
SatI	GCNGC	2 cut(s)	75, 78
Sau3AI	GATC	4 cut(s)	35, 39, 436, 616
SchI	GAGTC	3 cut(s)	2, 178, 392
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	6 cut(s)	129, 420, 431, 465, 486, 643
SfcI	CTRYAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	598
SsiI	CCGC	4 cut(s)	5, 75, 78, 158
StyD4I	CCNGG	1 cut(s)	42
TaqI	TCGA	4 cut(s)	38, 201, 381, 615
TasI	AATT	1 cut(s)	598
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	2 cut(s)	187, 282
Tru1I	TTAA	5 cut(s)	228, 242, 453, 557, 597
Tru9I	TTAA	5 cut(s)	228, 242, 453, 557, 597
TscAI	CASTG	2 cut(s)	22, 580
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	4 cut(s)	200, 270, 498, 591
TspRI	CASTG	2 cut(s)	22, 580
Tth111I	GACNNNGTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.