Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Reverse (-)

49595909 .. 49597522

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCGTAAACTTAAGTTGAGCCTCGAATCCAGGGACCAACTGAAAGAGATACATGCTGACATTGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCGGATAACCGGGATCTCTATACTGACATGAATCAGTTTTTTGTCAAAAGATGTCAATGGGAAACTGATTTTAAGGAAATCCACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGCCTTTTGGCTTACTGCAATGATTGCTAACAAGATACTTTATAAGCAGATTGCAGAGAGAGATACAAAGGCTTTGTACTTTCTGAATGATATCGAGTCTAATAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTCAAGAATAAAGTCTTAACTAAAAAATATGAGGTGATTGATGACGACAACGAGTCTGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTCAAAAATTAACGCAGCAGAGTGGTAAAAGTAGTGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTGTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGTGACCTTCCGACGGATTATTTAATTGGTACCAAGTTTCGAGACAAGATCATTCCGCATGCTATATCCTGGCATAGATTTTCAGAAGACGATGATAGTGATTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

255

Amino Acids

30.04

Weight (kDa)

5.32

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	62 - 230	7.8e-35	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AciI	CCGC	2 cut(s)	110, 671
AclWI	GGATC	2 cut(s)	129, 572
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	317, 646
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	358, 406, 469
AhdI	GACNNNNNGTC	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	29, 683
AluBI	AGCT	2 cut(s)	370, 602
AluI	AGCT	2 cut(s)	370, 602
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	129, 572
ApeKI	GCWGC	2 cut(s)	224, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	370, 448, 629
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	211, 529
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	31, 685
BciVI	GTATCC	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	225, 518
BlsI	GCNGC	2 cut(s)	226, 519
Bme1390I	CCNGG	3 cut(s)	31, 119, 685
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	35, 646
BmrFI	CCNGG	3 cut(s)	31, 119, 685
BpiI	GAAGAC	1 cut(s)	708
BplI	GAGNNNNNCTC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	31, 685
BseDI	CCNNGG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	211, 529
BshNI	GGYRCC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	3 cut(s)	47, 221, 493
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	3 cut(s)	47, 221, 493
Bsp143I	GATC	4 cut(s)	121, 388, 577, 663
BspACI	CCGC	2 cut(s)	110, 671
BspLI	GGNNCC	2 cut(s)	35, 646
BspPI	GGATC	2 cut(s)	129, 572
BspT107I	GGYRCC	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	4 cut(s)	121, 388, 577, 663
Bst2UI	CCWGG	2 cut(s)	31, 685
Bst4CI	ACNGT	2 cut(s)	574, 731
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	675
BstEII	GGTNACC	1 cut(s)	617
BstKTI	GATC	4 cut(s)	124, 391, 580, 666
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	4 cut(s)	121, 388, 577, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	31, 685
BstNSI	RCATGY	2 cut(s)	56, 677
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	29, 117, 683
BstV1I	GCAGC	2 cut(s)	211, 529
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	316, 645
CviAII	CATG	3 cut(s)	53, 136, 674
CviJI	RGCY	7 cut(s)	21, 77, 199, 250, 311, 370, 602
CviKI_1	RGCY	7 cut(s)	21, 77, 199, 250, 311, 370, 602
CviQI	GTAC	2 cut(s)	316, 645
DpnI	GATC	4 cut(s)	123, 390, 579, 665
DpnII	GATC	4 cut(s)	121, 388, 577, 663
DriI	GACNNNNNGTC	1 cut(s)	454
Eam1105I	GACNNNNNGTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	29, 683
EcoRV	GATATC	1 cut(s)	331
FaeI	CATG	3 cut(s)	56, 139, 677
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 606, 638
FaqI	GGGAC	3 cut(s)	47, 221, 493
FatI	CATG	3 cut(s)	52, 135, 673
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	225, 518
Fsp4HI	GCNGC	2 cut(s)	225, 518
GluI	GCNGC	2 cut(s)	225, 518
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	56, 139, 677
HinfI	GANTC	5 cut(s)	26, 139, 234, 335, 455
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	370, 448, 629
Hpy166II	GTNNAC	2 cut(s)	8, 378
Hpy188I	TCNGA	3 cut(s)	324, 627, 700
Hpy188III	TCNNGA	2 cut(s)	406, 656
Hpy8I	GTNNAC	2 cut(s)	8, 378
Hpy99I	CGWCG	1 cut(s)	631
HpyAV	CCTTC	3 cut(s)	463, 510, 632
HpyCH4III	ACNGT	2 cut(s)	574, 731
HpyCH4V	TGCA	2 cut(s)	257, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	56, 139, 677
KpnI	GGTACC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	121, 388, 577, 663
LpnPI	CCDG	7 cut(s)	16, 43, 131, 252, 478, 670, 697
Lsp1109I	GCAGC	2 cut(s)	211, 529
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	4 cut(s)	123, 390, 579, 665
MboI	GATC	4 cut(s)	121, 388, 577, 663
MboII	GAAGA	2 cut(s)	713, 749
MfeI	CAATTG	2 cut(s)	348, 474
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	4 cut(s)	348, 474, 509, 639
MlyI	GAGTC	3 cut(s)	243, 344, 464
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	7 cut(s)	32, 64, 82, 89, 210, 427, 591
MseI	TTAA	7 cut(s)	12, 180, 194, 419, 512, 549, 638
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	31, 119, 685
MunI	CAATTG	2 cut(s)	348, 474
MvaI	CCWGG	2 cut(s)	31, 685
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	121, 388, 577, 663
NlaIII	CATG	3 cut(s)	56, 139, 677
NlaIV	GGNNCC	2 cut(s)	35, 646
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	2 cut(s)	56, 677
PaeI	GCATGC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	26, 139
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	226, 519
PleI	GAGTC	3 cut(s)	242, 343, 463
PpsI	GAGTC	3 cut(s)	242, 343, 463
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	29, 683
PspEI	GGTNACC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	29, 683
PspN4I	GGNNCC	2 cut(s)	35, 646
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	317, 646
RsaNI	GTAC	2 cut(s)	316, 645
SaqAI	TTAA	7 cut(s)	12, 180, 194, 419, 512, 549, 638
SatI	GCNGC	2 cut(s)	225, 518
Sau3AI	GATC	4 cut(s)	121, 388, 577, 663
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	3 cut(s)	243, 344, 464
ScrFI	CCNGG	3 cut(s)	31, 119, 685
SetI	ASST	7 cut(s)	372, 383, 438, 604, 619, 624, 761
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	11, 754
SmoI	CTYRAG	2 cut(s)	11, 754
SphI	GCATGC	1 cut(s)	677
Sse9I	AATT	4 cut(s)	348, 474, 509, 639
SsiI	CCGC	2 cut(s)	110, 671
StyD4I	CCNGG	3 cut(s)	29, 117, 683
TaaI	ACNGT	2 cut(s)	574, 731
TaqI	TCGA	4 cut(s)	24, 333, 576, 655
TasI	AATT	4 cut(s)	348, 474, 509, 639
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	26, 139
Tru1I	TTAA	7 cut(s)	12, 180, 194, 419, 512, 549, 638
Tru9I	TTAA	7 cut(s)	12, 180, 194, 419, 512, 549, 638
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	224, 517
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	152, 222, 552, 621, 750
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	1 cut(s)	736
Tth111I	GACNNNGTC	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	2 cut(s)	56, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.