Rh3AG004500

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012686
Physical Location & Seq
Forward (+)
345466 .. 347334
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG004500.1

Sequence Viewer

Length: 852 bp
ATGGCGCAATCATCAACCAGTGGAAAGAGGGCAAAAACATCCATCCACGATGACGTCTCCGGCAACGACGCCGCCGCAATTGAAGCCTACAAGACTTACGTACGGTTGAGCCTCGAATCCAGGGACCAACTGAAAGAGATACATGCTGACATTGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCGGATAACCGGGATCTCTATACTGACATGAATCAGTTTTTTGTCAAAAGATGTCAATGGGAAACTGATTTTAAGGAAATCCACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGCCTTTTGGCTTACTGCAATGATTGCTAACAAGATACTTTATAAGCAGATTGCAGAGAGAGATACAAAGGCTTTGTACTTTCTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCTGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTAAAAAATTGACGCAGCAGAGTGGTAAAAGCAGTGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTGTCGATCCTCTTTCGTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCGACGGATTATTTAATTGGTACCAAGTTTCGGGACAAGATCATTCCGCATGCTATATCCTGGCATGCATTTTCAGAAGACGATGATAGTGACTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGGTGGTAG

Protein Analysis

283

Amino Acids

32.87

Weight (kDa)

5.33

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 60 - 259 6.6e-35 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AatII GACGTC 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 731
AciI CCGC 4 cut(s) 72, 75, 200, 758
AclWI GGATC 2 cut(s) 219, 659
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 2 cut(s) 54, 69
AfaI GTAC 3 cut(s) 102, 407, 733
AfiI CCNNNNNNNGG 2 cut(s) 715, 741
AgsI TTSAA 3 cut(s) 83, 448, 556
AhdI GACNNNNNGTC 1 cut(s) 541
AjnI CCWGG 2 cut(s) 119, 770
AluBI AGCT 2 cut(s) 460, 689
AluI AGCT 2 cut(s) 460, 689
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 219, 659
ApeKI GCWGC 2 cut(s) 314, 604
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
Asp718I GGTACC 1 cut(s) 731
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 460, 538
AvaII GGWCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 795
BbvI GCAGC 2 cut(s) 301, 616
BccI CCATC 2 cut(s) 50, 186
BciT130I CCWGG 2 cut(s) 121, 772
BciVI GTATCC 1 cut(s) 594
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 429
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 4 cut(s) 72, 75, 315, 605
BlsI GCNGC 4 cut(s) 73, 76, 316, 606
Bme1390I CCNGG 3 cut(s) 121, 209, 772
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 125, 733
BmrFI CCNGG 3 cut(s) 121, 209, 772
BpiI GAAGAC 1 cut(s) 795
BplI GAGNNNNNCTC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 2 cut(s) 54, 69
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 715, 741
Bse1I ACTGG 2 cut(s) 18, 584
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 121, 772
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 38, 42
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 715, 741
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 18, 584
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 301, 616
BshNI GGYRCC 1 cut(s) 731
BsiSI CCGG 2 cut(s) 60, 208
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 4 cut(s) 137, 311, 580, 758
BslI CCNNNNNNNGG 2 cut(s) 715, 741
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 4 cut(s) 137, 311, 580, 758
Bsp143I GATC 4 cut(s) 211, 478, 664, 750
BspACI CCGC 4 cut(s) 72, 75, 200, 758
BspLI GGNNCC 2 cut(s) 125, 733
BspPI GGATC 2 cut(s) 219, 659
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 18, 584
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 4 cut(s) 211, 478, 664, 750
BssNI GRCGYC 2 cut(s) 54, 69
Bst2UI CCWGG 2 cut(s) 121, 772
Bst4CI ACNGT 3 cut(s) 105, 661, 818
BstACI GRCGYC 2 cut(s) 54, 69
BstAPI GCANNNNNTGC 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 762, 777
BstF5I GGATG 2 cut(s) 38, 42
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 214, 481, 667, 753
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 211, 478, 664, 750
BstMWI GCNNNNNNNGC 2 cut(s) 83, 353
BstNI CCWGG 2 cut(s) 121, 772
BstNSI RCATGY 3 cut(s) 146, 764, 779
BstSCI CCNGG 3 cut(s) 119, 207, 770
BstSNI TACGTA 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 301, 616
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuI GTATCC 1 cut(s) 594
BtsCI GGATG 2 cut(s) 38, 42
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 25, 628, 823
Cac8I GCNNGC 2 cut(s) 762, 777
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 2 cut(s) 77, 610
Csp6I GTAC 3 cut(s) 101, 406, 732
CviAII CATG 4 cut(s) 143, 226, 761, 776
CviJI RGCY 8 cut(s) 86, 111, 167, 289, 340, 401, 460, 689
CviKI_1 RGCY 8 cut(s) 86, 111, 167, 289, 340, 401, 460, 689
CviQI GTAC 3 cut(s) 101, 406, 732
DpnI GATC 4 cut(s) 213, 480, 666, 752
DpnII GATC 4 cut(s) 211, 478, 664, 750
DriI GACNNNNNGTC 1 cut(s) 541
Eam1105I GACNNNNNGTC 1 cut(s) 541
EciI GGCGGA 1 cut(s) 215
Eco105I TACGTA 1 cut(s) 100
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 119, 770
EcoRV GATATC 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 781
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 4 cut(s) 146, 229, 764, 779
FalI AAGNNNNNCTT 4 cut(s) 455, 487, 693, 725
FaqI GGGAC 4 cut(s) 137, 311, 580, 758
FatI CATG 4 cut(s) 142, 225, 760, 775
FauNDI CATATG 1 cut(s) 652
Fnu4HI GCNGC 4 cut(s) 72, 75, 315, 605
FokI GGATG 2 cut(s) 25, 29
Fsp4HI GCNGC 4 cut(s) 72, 75, 315, 605
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 72, 75, 315, 605
HapII CCGG 2 cut(s) 60, 208
HgaI GACGC 2 cut(s) 77, 610
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 54, 69
Hin1II CATG 4 cut(s) 146, 229, 764, 779
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 116, 229, 324, 425, 542
HpaII CCGG 2 cut(s) 60, 208
HphI GGTGA 2 cut(s) 460, 538
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 414, 714, 787
Hpy188III TCNNGA 1 cut(s) 743
Hpy8I GTNNAC 1 cut(s) 468
Hpy99I CGWCG 2 cut(s) 71, 718
HpyAV CCTTC 3 cut(s) 550, 597, 719
HpyCH4III ACNGT 3 cut(s) 105, 661, 818
HpyCH4IV ACGT 2 cut(s) 54, 99
HpyCH4V TGCA 3 cut(s) 347, 383, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 353
HpySE526I ACGT 2 cut(s) 54, 99
Hsp92I GRCGYC 2 cut(s) 54, 69
Hsp92II CATG 4 cut(s) 146, 229, 764, 779
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 735
Kzo9I GATC 4 cut(s) 211, 478, 664, 750
LpnPI CCDG 9 cut(s) 31, 73, 106, 133, 221, 342, 565, 757, 784
Lsp1109I GCAGC 2 cut(s) 301, 616
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 54, 99
MaeIII GTNAC 1 cut(s) 800
MalI GATC 4 cut(s) 213, 480, 666, 752
MboI GATC 4 cut(s) 211, 478, 664, 750
MboII GAAGA 2 cut(s) 800, 836
MfeI CAATTG 3 cut(s) 78, 438, 561
MflI RGATCY 1 cut(s) 211
MluCI AATT 5 cut(s) 78, 438, 561, 596, 726
MlyI GAGTC 3 cut(s) 333, 434, 551
MmeI TCCRAC 1 cut(s) 737
MnlI CCTC 8 cut(s) 21, 122, 154, 172, 179, 300, 517, 678
Mph1103I ATGCAT 1 cut(s) 781
MseI TTAA 6 cut(s) 270, 284, 495, 509, 636, 725
MspI CCGG 2 cut(s) 60, 208
MspR9I CCNGG 3 cut(s) 121, 209, 772
MunI CAATTG 3 cut(s) 78, 438, 561
MvaI CCWGG 2 cut(s) 121, 772
MwoI GCNNNNNNNGC 2 cut(s) 83, 353
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 652
NdeII GATC 4 cut(s) 211, 478, 664, 750
NlaIII CATG 4 cut(s) 146, 229, 764, 779
NlaIV GGNNCC 2 cut(s) 125, 733
NmuCI GTSAC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 3 cut(s) 146, 764, 779
PaeI GCATGC 2 cut(s) 764, 779
PfeI GAWTC 2 cut(s) 116, 229
Pfl23II CGTACG 1 cut(s) 100
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 4 cut(s) 73, 76, 316, 606
PleI GAGTC 3 cut(s) 332, 433, 550
PpsI GAGTC 3 cut(s) 332, 433, 550
Ppu21I YACGTR 1 cut(s) 100
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 119, 770
PspGI CCWGG 2 cut(s) 119, 770
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 125, 733
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 3 cut(s) 102, 407, 733
RsaNI GTAC 3 cut(s) 101, 406, 732
SaqAI TTAA 6 cut(s) 270, 284, 495, 509, 636, 725
SatI GCNGC 4 cut(s) 72, 75, 315, 605
Sau3AI GATC 4 cut(s) 211, 478, 664, 750
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 3 cut(s) 333, 434, 551
ScrFI CCNGG 3 cut(s) 121, 209, 772
SetI ASST 8 cut(s) 57, 102, 462, 473, 528, 691, 711, 848
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
SnaBI TACGTA 1 cut(s) 100
SphI GCATGC 2 cut(s) 764, 779
Sse9I AATT 5 cut(s) 78, 438, 561, 596, 726
SsiI CCGC 4 cut(s) 72, 75, 200, 758
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 3 cut(s) 119, 207, 770
TaaI ACNGT 3 cut(s) 105, 661, 818
TaiI ACGT 2 cut(s) 57, 102
TaqI TCGA 3 cut(s) 114, 423, 663
TasI AATT 5 cut(s) 78, 438, 561, 596, 726
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 74, 77
TfiI GAWTC 2 cut(s) 116, 229
Tru1I TTAA 6 cut(s) 270, 284, 495, 509, 636, 725
Tru9I TTAA 6 cut(s) 270, 284, 495, 509, 636, 725
TscAI CASTG 3 cut(s) 25, 628, 823
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 2 cut(s) 314, 604
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 5 cut(s) 242, 312, 639, 708, 837
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 3 cut(s) 25, 628, 823
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 3 cut(s) 146, 764, 779
XspI CTAG 1 cut(s) 429
ZraI GACGTC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.