Rroxscaffold_6G00425880

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012686
Physical Location & Seq
Forward (+)
46823826 .. 46826104
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425880.1

Sequence Viewer

Length: 918 bp
ATGGCGCAATCATCTTCCAGTGCAGAGAGGGCAAAAACAACCATCCAAGATGACGACGACGCCGCCGCAATTGAAGCCTACAAGACTTACGTACGGGTGATGTCTTGCGTTCCCCCAACCCACTTCAAGGAGATGGAAAAAACCAAACCGGAGAGTATGCGTAAACTTAAGTTGAGCCTCGAATCCAGGGACCAACTGAAAGAGATACATGCTGACATTGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCTGATAACCGGGATCTCTATACTGACATGAATCAGTTTTTTGTCAAAATATGTCAATGGGAAACTGATTTTAAGGAAATCCACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGCCTTTTGGCTTACTGCAATGATTGCTAACAAGATACTTTATAAGCAGATTGCAGAGAGAGATACAAAGGCTTTGTACTTTCTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCTGTTTCGTTGAAAGCAATTGGGACTAAAATAGACTGGTATCCTTCTCAAAAATTAACGCAGCAGAGTGGTAAAAGCAGTGAAAGTTTCTTTCAGTTCTTCAGTTCATATGCTACTGTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCAACGGATTATTTAATTGGTACCAAGTTTCGAGATAAGATCATTCCGCATGCTATATCCTGGCATAGATTTTCAGAAGACGATGATAGTGATTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGGTGGTAG

Protein Analysis

305

Amino Acids

35.62

Weight (kDa)

5.21

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 92 - 281 5e-34 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
Acc65I GGTACC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 797
AciI CCGC 3 cut(s) 63, 66, 824
AclWI GGATC 2 cut(s) 285, 725
AcuI CTGAAG 2 cut(s) 548, 694
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 93, 473, 799
AfiI CCNNNNNNNGG 2 cut(s) 127, 781
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 74, 127, 514, 622
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 2 cut(s) 185, 836
AluBI AGCT 2 cut(s) 526, 755
AluI AGCT 2 cut(s) 526, 755
AlwI GGATC 2 cut(s) 285, 725
ApeKI GCWGC 2 cut(s) 380, 670
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
Asp718I GGTACC 1 cut(s) 797
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 109, 526, 604
AvaII GGWCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 2 cut(s) 367, 682
BccI CCATC 3 cut(s) 50, 127, 252
BciT130I CCWGG 2 cut(s) 187, 838
BciVI GTATCC 1 cut(s) 660
BcnI CCSGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 4 cut(s) 63, 66, 381, 671
BlsI GCNGC 4 cut(s) 64, 67, 382, 672
Bme1390I CCNGG 3 cut(s) 187, 275, 838
Bme18I GGWCC 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 191, 799
BmrFI CCNGG 3 cut(s) 187, 275, 838
BpiI GAAGAC 1 cut(s) 861
BplI GAGNNNNNCTC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 892
BpuMI CCSGG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 781
Bse1I ACTGG 2 cut(s) 18, 650
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 187, 838
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 127, 781
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 18, 650
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 367, 682
BsgI GTGCAG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 797
BsiSI CCGG 2 cut(s) 149, 274
BsiWI CGTACG 1 cut(s) 91
BslFI GGGAC 3 cut(s) 203, 377, 646
BslI CCNNNNNNNGG 2 cut(s) 127, 781
BsmFI GGGAC 3 cut(s) 203, 377, 646
Bsp143I GATC 4 cut(s) 277, 544, 730, 816
BspACI CCGC 3 cut(s) 63, 66, 824
BspLI GGNNCC 2 cut(s) 191, 799
BspPI GGATC 2 cut(s) 285, 725
BspT107I GGYRCC 1 cut(s) 797
BspTI CTTAAG 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 2 cut(s) 18, 650
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 277, 544, 730, 816
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 187, 838
Bst4CI ACNGT 2 cut(s) 727, 884
BstACI GRCGYC 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 828
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 280, 547, 733, 819
BstMBI GATC 4 cut(s) 277, 544, 730, 816
BstMWI GCNNNNNNNGC 3 cut(s) 29, 74, 419
BstNI CCWGG 2 cut(s) 187, 838
BstNSI RCATGY 2 cut(s) 212, 830
BstSCI CCNGG 3 cut(s) 185, 273, 836
BstSNI TACGTA 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 367, 682
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 660
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 3 cut(s) 25, 694, 889
Cac8I GCNNGC 1 cut(s) 828
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 92, 472, 798
CviAII CATG 3 cut(s) 209, 292, 827
CviJI RGCY 9 cut(s) 77, 177, 233, 266, 355, 406, 467, 526, 755
CviKI_1 RGCY 9 cut(s) 77, 177, 233, 266, 355, 406, 467, 526, 755
CviQI GTAC 3 cut(s) 92, 472, 798
DpnI GATC 4 cut(s) 279, 546, 732, 818
DpnII GATC 4 cut(s) 277, 544, 730, 816
DriI GACNNNNNGTC 1 cut(s) 607
Eam1105I GACNNNNNGTC 1 cut(s) 607
Eco105I TACGTA 1 cut(s) 91
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 548, 694
EcoRII CCWGG 2 cut(s) 185, 836
EcoRV GATATC 1 cut(s) 487
FaeI CATG 3 cut(s) 212, 295, 830
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 759, 791
FaqI GGGAC 3 cut(s) 203, 377, 646
FatI CATG 3 cut(s) 208, 291, 826
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 4 cut(s) 63, 66, 381, 671
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 63, 66, 381, 671
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 63, 66, 381, 671
HapII CCGG 2 cut(s) 149, 274
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 212, 295, 830
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 182, 295, 390, 491, 608
HpaII CCGG 2 cut(s) 149, 274
HphI GGTGA 3 cut(s) 109, 526, 604
Hpy166II GTNNAC 2 cut(s) 164, 534
Hpy188I TCNGA 2 cut(s) 480, 853
Hpy188III TCNNGA 1 cut(s) 809
Hpy8I GTNNAC 2 cut(s) 164, 534
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 2 cut(s) 663, 785
HpyCH4III ACNGT 2 cut(s) 727, 884
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 23, 413, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 74, 419
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 212, 295, 830
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 1 cut(s) 801
Kzo9I GATC 4 cut(s) 277, 544, 730, 816
LpnPI CCDG 9 cut(s) 31, 162, 172, 199, 287, 408, 631, 823, 850
Lsp1109I GCAGC 2 cut(s) 367, 682
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 90
MalI GATC 4 cut(s) 279, 546, 732, 818
MboI GATC 4 cut(s) 277, 544, 730, 816
MboII GAAGA 4 cut(s) 6, 700, 866, 902
MfeI CAATTG 3 cut(s) 69, 504, 627
MflI RGATCY 1 cut(s) 277
MluCI AATT 5 cut(s) 69, 504, 627, 662, 792
MlyI GAGTC 3 cut(s) 399, 500, 617
MmeI TCCRAC 1 cut(s) 803
MnlI CCTC 8 cut(s) 21, 188, 220, 238, 245, 366, 583, 744
MseI TTAA 7 cut(s) 168, 336, 350, 561, 575, 665, 791
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 2 cut(s) 149, 274
MspR9I CCNGG 3 cut(s) 187, 275, 838
MunI CAATTG 3 cut(s) 69, 504, 627
MvaI CCWGG 2 cut(s) 187, 838
MwoI GCNNNNNNNGC 3 cut(s) 29, 74, 419
NciI CCSGG 1 cut(s) 275
NdeI CATATG 1 cut(s) 718
NdeII GATC 4 cut(s) 277, 544, 730, 816
NlaIII CATG 3 cut(s) 212, 295, 830
NlaIV GGNNCC 2 cut(s) 191, 799
NspI RCATGY 2 cut(s) 212, 830
PaeI GCATGC 1 cut(s) 830
PfeI GAWTC 2 cut(s) 182, 295
Pfl23II CGTACG 1 cut(s) 91
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 64, 67, 382, 672
PleI GAGTC 3 cut(s) 398, 499, 616
PpsI GAGTC 3 cut(s) 398, 499, 616
Ppu21I YACGTR 1 cut(s) 91
PsiI TTATAA 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 185, 836
PspGI CCWGG 2 cut(s) 185, 836
PspLI CGTACG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 191, 799
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 3 cut(s) 93, 473, 799
RsaNI GTAC 3 cut(s) 92, 472, 798
SaqAI TTAA 7 cut(s) 168, 336, 350, 561, 575, 665, 791
SatI GCNGC 4 cut(s) 63, 66, 381, 671
Sau3AI GATC 4 cut(s) 277, 544, 730, 816
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 3 cut(s) 399, 500, 617
ScrFI CCNGG 3 cut(s) 187, 275, 838
SetI ASST 7 cut(s) 93, 528, 539, 594, 757, 777, 914
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 167, 907
SmoI CTYRAG 2 cut(s) 167, 907
SnaBI TACGTA 1 cut(s) 91
SphI GCATGC 1 cut(s) 830
Sse9I AATT 5 cut(s) 69, 504, 627, 662, 792
SsiI CCGC 3 cut(s) 63, 66, 824
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 185, 273, 836
TaaI ACNGT 2 cut(s) 727, 884
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 180, 489, 729, 808
TasI AATT 5 cut(s) 69, 504, 627, 662, 792
TatI WGTACW 1 cut(s) 471
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 2 cut(s) 182, 295
Tru1I TTAA 7 cut(s) 168, 336, 350, 561, 575, 665, 791
Tru9I TTAA 7 cut(s) 168, 336, 350, 561, 575, 665, 791
TscAI CASTG 3 cut(s) 25, 694, 889
TseI GCWGC 2 cut(s) 380, 670
TspDTI ATGAA 5 cut(s) 308, 378, 705, 774, 903
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 3 cut(s) 25, 694, 889
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 2 cut(s) 212, 830
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.