Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

338121 .. 340281

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG004300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCGTAAGCATAAGTTGTTGCGCGAGTCCAGGGACCAACTGAAAGAGATACATGCTGACATTGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCTGATAACCGGAATCTCTGTACTGACATGAATAAGTTTTTTGTCGAAAGATGTCAATGGGAAACAAATTTTAAGGAAATACACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGACTTTTGGCTTACTGCAATGATTGCTAACAAGATACTTTATAAGCAGATTGCAGAGAGAGATACAGAGGCTTTGTACTTTTTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCTGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTCAAAACTTAACGCAGCAGAGTGGTAAAAGCAGTGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTATCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCGACGGATTATTTAATTGGTACCAAGTTTCGAGACAAGATCATTCCGCATGCTATATCCTGGTATACATTTTCAGAGGATGATGATAGTGATTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGATGTCGTAGAGGCTTCTTGAGATTAACTACTGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

264

Amino Acids

31.21

Weight (kDa)

5.35

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	28 - 230	8e-37	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	668
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	130, 317, 643
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	3 cut(s)	325, 358, 466
AhdI	GACNNNNNGTC	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	29, 680
AluBI	AGCT	3 cut(s)	370, 599, 790
AluI	AGCT	3 cut(s)	370, 599, 790
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	224, 514
ApoI	RAATTY	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
Asp718I	GGTACC	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	370, 448
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	211, 526
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	31, 682
BciVI	GTATCC	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	2 cut(s)	225, 515
BlsI	GCNGC	2 cut(s)	226, 516
Bme1390I	CCNGG	2 cut(s)	31, 682
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	35, 643
BmrFI	CCNGG	2 cut(s)	31, 682
BplI	GAGNNNNNCTC	2 cut(s)	734, 766
BpuEI	CTTGAG	2 cut(s)	736, 793
Bsa29I	ATCGAT	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	31, 682
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	211, 526
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	641
BshVI	ATCGAT	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	3 cut(s)	47, 221, 490
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	3 cut(s)	47, 221, 490
Bsp143I	GATC	3 cut(s)	388, 574, 660
BspACI	CCGC	1 cut(s)	668
BspCNI	CTCAG	1 cut(s)	778
BspDI	ATCGAT	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	35, 643
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	388, 574, 660
BssNAI	GTATAC	1 cut(s)	687
Bst1107I	GTATAC	1 cut(s)	687
Bst2UI	CCWGG	2 cut(s)	31, 682
Bst4CI	ACNGT	1 cut(s)	728
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	391, 577, 663
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	3 cut(s)	388, 574, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	31, 682
BstNSI	RCATGY	2 cut(s)	56, 674
BstSCI	CCNGG	2 cut(s)	29, 680
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	211, 526
BstZ17I	GTATAC	1 cut(s)	687
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	504
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	706
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	538, 733
Cac8I	GCNNGC	1 cut(s)	672
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	3 cut(s)	129, 316, 642
CviAII	CATG	3 cut(s)	53, 136, 671
CviJI	RGCY	9 cut(s)	77, 110, 199, 250, 311, 370, 599, 768, 790
CviKI_1	RGCY	9 cut(s)	77, 110, 199, 250, 311, 370, 599, 768, 790
CviQI	GTAC	3 cut(s)	129, 316, 642
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	3 cut(s)	390, 576, 662
DpnII	GATC	3 cut(s)	388, 574, 660
DriI	GACNNNNNGTC	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	29, 680
EcoRV	GATATC	1 cut(s)	331
FaeI	CATG	3 cut(s)	56, 139, 674
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 603, 635
FaqI	GGGAC	3 cut(s)	47, 221, 490
FatI	CATG	3 cut(s)	52, 135, 670
FauNDI	CATATG	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	2 cut(s)	225, 515
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	2 cut(s)	225, 515
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	225, 515
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	56, 139, 674
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	5 cut(s)	26, 121, 234, 335, 452
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	2 cut(s)	370, 448
Hpy166II	GTNNAC	2 cut(s)	378, 687
Hpy188I	TCNGA	2 cut(s)	624, 697
Hpy188III	TCNNGA	3 cut(s)	653, 753, 772
Hpy8I	GTNNAC	2 cut(s)	378, 687
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	460, 507, 629
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4V	TGCA	2 cut(s)	257, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	786
Hsp92II	CATG	3 cut(s)	56, 139, 674
HspAI	GCGC	1 cut(s)	22
KpnI	GGTACC	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	388, 574, 660
LpnPI	CCDG	7 cut(s)	16, 43, 131, 252, 475, 667, 694
Lsp1109I	GCAGC	2 cut(s)	211, 526
MaeI	CTAG	1 cut(s)	339
MalI	GATC	3 cut(s)	390, 576, 662
MboI	GATC	3 cut(s)	388, 574, 660
MboII	GAAGA	1 cut(s)	746
MfeI	CAATTG	2 cut(s)	348, 471
MluCI	AATT	4 cut(s)	175, 348, 471, 636
MlyI	GAGTC	4 cut(s)	35, 243, 344, 461
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	9 cut(s)	64, 82, 89, 210, 301, 427, 588, 691, 758
MseI	TTAA	8 cut(s)	180, 194, 405, 419, 509, 546, 635, 779
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	31, 682
MunI	CAATTG	2 cut(s)	348, 471
MvaI	CCWGG	2 cut(s)	31, 682
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	3 cut(s)	388, 574, 660
NlaIII	CATG	3 cut(s)	56, 139, 674
NlaIV	GGNNCC	2 cut(s)	35, 643
NspI	RCATGY	2 cut(s)	56, 674
PaeI	GCATGC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	226, 516
PleI	GAGTC	4 cut(s)	34, 242, 343, 460
PpsI	GAGTC	4 cut(s)	34, 242, 343, 460
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	29, 680
PspGI	CCWGG	2 cut(s)	29, 680
PspN4I	GGNNCC	2 cut(s)	35, 643
PspPI	GGNCC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	3 cut(s)	130, 317, 643
RsaNI	GTAC	3 cut(s)	129, 316, 642
SaqAI	TTAA	8 cut(s)	180, 194, 405, 419, 509, 546, 635, 779
SatI	GCNGC	2 cut(s)	225, 515
Sau3AI	GATC	3 cut(s)	388, 574, 660
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	4 cut(s)	35, 243, 344, 461
ScrFI	CCNGG	2 cut(s)	31, 682
SetI	ASST	6 cut(s)	372, 383, 438, 601, 621, 792
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	751, 772
SmoI	CTYRAG	2 cut(s)	751, 772
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	4 cut(s)	175, 348, 471, 636
SsiI	CCGC	1 cut(s)	668
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	29, 680
TaaI	ACNGT	1 cut(s)	728
TaqI	TCGA	4 cut(s)	153, 333, 573, 652
TasI	AATT	4 cut(s)	175, 348, 471, 636
TatI	WGTACW	2 cut(s)	128, 315
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	8 cut(s)	180, 194, 405, 419, 509, 546, 635, 779
Tru9I	TTAA	8 cut(s)	180, 194, 405, 419, 509, 546, 635, 779
TscAI	CASTG	2 cut(s)	538, 733
TseI	GCWGC	2 cut(s)	224, 514
TspDTI	ATGAA	5 cut(s)	152, 222, 549, 618, 747
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	2 cut(s)	538, 733
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	2 cut(s)	56, 674
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.