Rroxscaffold_6G00425900

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012686
Physical Location & Seq
Forward (+)
46839834 .. 46842132
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425900.1

Sequence Viewer

Length: 1044 bp
ATGGCGCAATCATCTACCAGTGCAAAGTGGGCAAAAACATCGATCCAAGATGACGTCTCCGGCGGCGACGCCGCCGCAATTGAAGCCTACAAGACTTACGTACGGGTGATGTCTTGCATTCCCCCAACCCACTTCAAAGAGATGGAACAAACCAAACCAGAGAGTATGCGTAAGCATAAGTTGTTGCGCGAGTCCAGGGACCAACTGAAAGAGATACATGCTGACATTGTCAAGGAGGAAGCCCTCTTTGTTGAGGAGAGAAAGAGATGGGTGGCTGATAACCGGAATCTCTGTACTGACATGAATAAGTTTTTTGTCGAAAGATGTCAATGGGAAACAAATTTTAAGGAAATACACTTAAAGCCTCTTTATGAAAAGAGATGTATTGCTGCTAAAGGAGTCCCTGACTTTTGGCTTACTGCAATGATTGCTAACAAGATACTTTATAAGCAGATTGCAGAGAGAGATACAGAGGCTTTGTACTTTTTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCCGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTCAAAACTTAACGCAGCAGAGTGGTAAAAGCAGTGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTATCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCGATGGATTATTTTATTGGTACCAAGTTTCGAGACAAGATCATTCCGCATGCTATATCCTGGTATACATTTTCAGAGGATGATGATAGTGATTTTGGAGATGACAGTGATGAAGAATGTGAGCGTTGCTCAAGATGTCGTAGAGGCTTCTTGAGAGTCCTTGATTTTTGGCATGTTGACATGGGCACATGGTTACCTCTGTTTTTACTCGTTACATTATGTTGGGTAATACCAAGTGAAGTCTTTTTTCAAAGATGA

Protein Analysis

347

Amino Acids

40.7

Weight (kDa)

5.37

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 77 - 285 5.8e-36 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AatII GACGTC 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 806
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 189
AciI CCGC 4 cut(s) 63, 72, 75, 833
AclWI GGATC 2 cut(s) 37, 734
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 557
AcyI GRCGYC 2 cut(s) 54, 69
AfaI GTAC 4 cut(s) 102, 295, 482, 808
AfiI CCNNNNNNNGG 1 cut(s) 790
AgsI TTSAA 6 cut(s) 83, 136, 490, 523, 631, 1037
AhdI GACNNNNNGTC 1 cut(s) 616
AjnI CCWGG 2 cut(s) 194, 845
AluBI AGCT 2 cut(s) 535, 764
AluI AGCT 2 cut(s) 535, 764
Alw26I GTCTC 2 cut(s) 61, 813
AlwI GGATC 2 cut(s) 37, 734
ApeKI GCWGC 2 cut(s) 389, 679
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp718I GGTACC 1 cut(s) 806
AspLEI GCGC 2 cut(s) 7, 189
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 118, 535, 613
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 974
BanI GGYRCC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 376, 691
BccI CCATC 3 cut(s) 136, 261, 784
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 2 cut(s) 196, 847
BciVI GTATCC 1 cut(s) 669
BcoDI GTCTC 2 cut(s) 61, 813
BfaI CTAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 5 cut(s) 64, 72, 75, 390, 680
BlsI GCNGC 5 cut(s) 65, 73, 76, 391, 681
Bme1390I CCNGG 2 cut(s) 196, 847
Bme18I GGWCC 1 cut(s) 199
BmeRI GACNNNNNGTC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 200, 808
BmrFI CCNGG 2 cut(s) 196, 847
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpuEI CTTGAG 2 cut(s) 901, 958
Bsa29I ATCGAT 2 cut(s) 41, 738
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 2 cut(s) 54, 69
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 790
Bse1I ACTGG 2 cut(s) 18, 659
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 196, 847
BseCI ATCGAT 2 cut(s) 41, 738
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 871
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 790
BseMI GCAATG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 18, 659
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 974
BseXI GCAGC 2 cut(s) 376, 691
Bsh1236I CGCG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 806
BshVI ATCGAT 2 cut(s) 41, 738
BsiSI CCGG 2 cut(s) 60, 283
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 3 cut(s) 212, 386, 655
BslI CCNNNNNNNGG 1 cut(s) 790
BsmAI GTCTC 2 cut(s) 61, 813
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 3 cut(s) 212, 386, 655
BsmI GAATGC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 974
Bsp143I GATC 4 cut(s) 42, 553, 739, 825
BspACI CCGC 4 cut(s) 63, 72, 75, 833
BspDI ATCGAT 2 cut(s) 41, 738
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 200, 808
BspPI GGATC 2 cut(s) 37, 734
BspT107I GGYRCC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 2 cut(s) 18, 659
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 4 cut(s) 42, 553, 739, 825
BssNAI GTATAC 1 cut(s) 852
BssNI GRCGYC 2 cut(s) 54, 69
Bst1107I GTATAC 1 cut(s) 852
Bst2UI CCWGG 2 cut(s) 196, 847
Bst4CI ACNGT 1 cut(s) 893
BstACI GRCGYC 2 cut(s) 54, 69
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 837
BstEII GGTNACC 1 cut(s) 978
BstF5I GGATG 1 cut(s) 871
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 7, 189
BstKTI GATC 4 cut(s) 45, 556, 742, 828
BstMAI GTCTC 2 cut(s) 61, 813
BstMBI GATC 4 cut(s) 42, 553, 739, 825
BstMWI GCNNNNNNNGC 3 cut(s) 29, 83, 428
BstNI CCWGG 2 cut(s) 196, 847
BstNSI RCATGY 3 cut(s) 221, 839, 962
BstPI GGTNACC 1 cut(s) 978
BstSCI CCNGG 2 cut(s) 194, 845
BstSLI GKGCMC 1 cut(s) 974
BstSNI TACGTA 1 cut(s) 100
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 376, 691
BstZ17I GTATAC 1 cut(s) 852
Bsu15I ATCGAT 2 cut(s) 41, 738
BsuI GTATCC 1 cut(s) 669
BsuTUI ATCGAT 2 cut(s) 41, 738
BtsCI GGATG 1 cut(s) 871
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 3 cut(s) 25, 703, 898
Cac8I GCNNGC 1 cut(s) 837
CfoI GCGC 2 cut(s) 7, 189
Cfr13I GGNCC 1 cut(s) 199
ClaI ATCGAT 2 cut(s) 41, 738
CseI GACGC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 101, 294, 481, 807
CviAII CATG 6 cut(s) 218, 301, 836, 959, 967, 975
CviJI RGCY 9 cut(s) 86, 242, 275, 364, 415, 476, 535, 764, 933
CviKI_1 RGCY 9 cut(s) 86, 242, 275, 364, 415, 476, 535, 764, 933
CviQI GTAC 4 cut(s) 101, 294, 481, 807
DpnI GATC 4 cut(s) 44, 555, 741, 827
DpnII GATC 4 cut(s) 42, 553, 739, 825
DriI GACNNNNNGTC 1 cut(s) 616
Eam1105I GACNNNNNGTC 1 cut(s) 616
Eco105I TACGTA 1 cut(s) 100
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 978
EcoO65I GGTNACC 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 194, 845
EcoRV GATATC 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 6 cut(s) 221, 304, 839, 962, 970, 978
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 768, 800
FaqI GGGAC 3 cut(s) 212, 386, 655
FatI CATG 6 cut(s) 217, 300, 835, 958, 966, 974
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 5 cut(s) 64, 72, 75, 390, 680
FokI GGATG 1 cut(s) 878
Fsp4HI GCNGC 5 cut(s) 64, 72, 75, 390, 680
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 6, 188
GluI GCNGC 5 cut(s) 64, 72, 75, 390, 680
HapII CCGG 2 cut(s) 60, 283
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 7, 189
Hin1I GRCGYC 2 cut(s) 54, 69
Hin1II CATG 6 cut(s) 221, 304, 839, 962, 970, 978
Hin6I GCGC 2 cut(s) 5, 187
HinP1I GCGC 2 cut(s) 5, 187
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 6 cut(s) 191, 286, 399, 500, 617, 942
HpaII CCGG 2 cut(s) 60, 283
HphI GGTGA 3 cut(s) 118, 535, 613
Hpy166II GTNNAC 3 cut(s) 543, 852, 964
Hpy188I TCNGA 2 cut(s) 789, 862
Hpy188III TCNNGA 3 cut(s) 818, 918, 937
Hpy8I GTNNAC 3 cut(s) 543, 852, 964
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 625, 672, 794
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 2 cut(s) 54, 99
HpyCH4V TGCA 4 cut(s) 23, 117, 422, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 83, 428
HpySE526I ACGT 2 cut(s) 54, 99
Hsp92I GRCGYC 2 cut(s) 54, 69
Hsp92II CATG 6 cut(s) 221, 304, 839, 962, 970, 978
HspAI GCGC 2 cut(s) 5, 187
KpnI GGTACC 1 cut(s) 810
Kzo9I GATC 4 cut(s) 42, 553, 739, 825
Lsp1109I GCAGC 2 cut(s) 376, 691
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 54, 99
MaeIII GTNAC 2 cut(s) 978, 997
MalI GATC 4 cut(s) 44, 555, 741, 827
MboI GATC 4 cut(s) 42, 553, 739, 825
MboII GAAGA 1 cut(s) 911
MfeI CAATTG 3 cut(s) 78, 513, 636
MhlI GDGCHC 1 cut(s) 974
MluCI AATT 4 cut(s) 78, 340, 513, 636
MlyI GAGTC 5 cut(s) 200, 408, 509, 626, 951
MseI TTAA 6 cut(s) 345, 359, 570, 584, 674, 711
MspI CCGG 2 cut(s) 60, 283
MspR9I CCNGG 2 cut(s) 196, 847
MunI CAATTG 3 cut(s) 78, 513, 636
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 196, 847
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 29, 83, 428
NdeI CATATG 1 cut(s) 727
NdeII GATC 4 cut(s) 42, 553, 739, 825
NlaIII CATG 6 cut(s) 221, 304, 839, 962, 970, 978
NlaIV GGNNCC 2 cut(s) 200, 808
NspI RCATGY 3 cut(s) 221, 839, 962
PaeI GCATGC 1 cut(s) 839
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 286
Pfl23II CGTACG 1 cut(s) 100
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 65, 73, 76, 391, 681
PleI GAGTC 5 cut(s) 199, 407, 508, 625, 950
PpsI GAGTC 5 cut(s) 199, 407, 508, 625, 950
Ppu21I YACGTR 1 cut(s) 100
PsiI TTATAA 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 194, 845
PspEI GGTNACC 1 cut(s) 978
PspGI CCWGG 2 cut(s) 194, 845
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 200, 808
PspPI GGNCC 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 4 cut(s) 102, 295, 482, 808
RsaNI GTAC 4 cut(s) 101, 294, 481, 807
SaqAI TTAA 6 cut(s) 345, 359, 570, 584, 674, 711
SatI GCNGC 5 cut(s) 64, 72, 75, 390, 680
Sau3AI GATC 4 cut(s) 42, 553, 739, 825
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 5 cut(s) 200, 408, 509, 626, 951
ScrFI CCNGG 2 cut(s) 196, 847
SduI GDGCHC 1 cut(s) 974
SetI ASST 8 cut(s) 57, 102, 537, 548, 603, 766, 786, 985
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 916, 937
SmoI CTYRAG 2 cut(s) 916, 937
SnaBI TACGTA 1 cut(s) 100
SphI GCATGC 1 cut(s) 839
Sse9I AATT 4 cut(s) 78, 340, 513, 636
SsiI CCGC 4 cut(s) 63, 72, 75, 833
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 194, 845
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 2 cut(s) 57, 102
TaqI TCGA 5 cut(s) 41, 318, 498, 738, 817
TasI AATT 4 cut(s) 78, 340, 513, 636
TatI WGTACW 2 cut(s) 293, 480
TauI GCSGC 3 cut(s) 66, 74, 77
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 6 cut(s) 345, 359, 570, 584, 674, 711
Tru9I TTAA 6 cut(s) 345, 359, 570, 584, 674, 711
TscAI CASTG 3 cut(s) 25, 703, 898
TseI GCWGC 2 cut(s) 389, 679
TspDTI ATGAA 5 cut(s) 317, 387, 714, 783, 912
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 3 cut(s) 25, 703, 898
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 340
XceI RCATGY 3 cut(s) 221, 839, 962
XmiI GTMKAC 1 cut(s) 851
XspI CTAG 1 cut(s) 504
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.