Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

336639 .. 338168

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAATCAGTTTTTTGTCAAAAGATGTCAATGGGAAACTGATTTTAAGGAAATCCACTTAAAGCCTCTTTATGAAAAGATTGCAGAGAGAGATACAAAGGCTTTGTACTTTCTGAATGATATCGAGTCTAGTAGGACAATTGATTTGAAAGGATTTGAGCTGAAGTTCACCTTTGACGATCATAATCCTTATTTTAAGAATAAAGTCTTAACTAAAAAGTATGAGGTGATTGATGACAACGAGTCTGTTTCGTTGAAGGCAATTGGGACTAAAATAGACTGGTATCCTTCTAAAAAATTGACGCAGCAGAGTGGTAAAAGCAGTGAAAGTTTCTTTAAGTTCTTTAGTTCATATGCTACTGTCGATCCTCTTTCTTTTGACAAAGAAGCTGATGAACTCAAAGGCGACCTTCCGACGGATTATTTAATTGGTACCAAGTTTCGGGACAAGATCATTCCGCATGCTATATCCTGGCATGCATTTTCAGAAGACGATGATAGTGACTTTGGAGATGACAGTGATGAAGAATTCGCAGAGGCTTCTGGAGAGTCCTTGATTTTTGGCATGTTGACATGGGCACATGGCTACCTCTGTTTTTACTCTTATTACATTATGTTGGGTAATACCAAGGGAGTCTTTTTCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

216

Amino Acids

25.24

Weight (kDa)

5.02

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	21 - 159	6.9e-27	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	107, 433
AfiI	CCNNNNNNNGG	2 cut(s)	415, 441
AgsI	TTSAA	3 cut(s)	148, 256, 643
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	2 cut(s)	160, 389
AluI	AGCT	2 cut(s)	160, 389
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp718I	GGTACC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	160, 238
BaeGI	GKGCMC	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	472
BciVI	GTATCC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	472
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 441
Bse1I	ACTGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	627
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	415, 441
BseNI	ACTGG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	431
BslFI	GGGAC	2 cut(s)	280, 458
BslI	CCNNNNNNNGG	2 cut(s)	415, 441
BsmFI	GGGAC	2 cut(s)	280, 458
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	178, 364, 450
BspACI	CCGC	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	3 cut(s)	178, 364, 450
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	361, 518
BstC8I	GCNNGC	2 cut(s)	462, 477
BstKTI	GATC	3 cut(s)	181, 367, 453
BstMBI	GATC	3 cut(s)	178, 364, 450
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	3 cut(s)	464, 479, 568
BstSCI	CCNGG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	580
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 523
Cac8I	GCNNGC	2 cut(s)	462, 477
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	106, 432
CviAII	CATG	5 cut(s)	461, 476, 565, 573, 581
CviJI	RGCY	6 cut(s)	64, 101, 160, 389, 539, 585
CviKI_1	RGCY	6 cut(s)	64, 101, 160, 389, 539, 585
CviQI	GTAC	2 cut(s)	106, 432
DpnI	GATC	3 cut(s)	180, 366, 452
DpnII	GATC	3 cut(s)	178, 364, 450
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	627
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	5 cut(s)	464, 479, 568, 576, 584
FalI	AAGNNNNNCTT	5 cut(s)	155, 187, 393, 425, 620
FaqI	GGGAC	2 cut(s)	280, 458
FatI	CATG	5 cut(s)	460, 475, 564, 572, 580
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	5 cut(s)	464, 479, 568, 576, 584
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	5 cut(s)	4, 125, 242, 548, 633
HphI	GGTGA	2 cut(s)	160, 238
Hpy166II	GTNNAC	2 cut(s)	168, 570
Hpy188I	TCNGA	3 cut(s)	114, 414, 487
Hpy188III	TCNNGA	2 cut(s)	443, 543
Hpy8I	GTNNAC	2 cut(s)	168, 570
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	250, 297, 419
HpyCH4III	ACNGT	2 cut(s)	361, 518
HpyCH4V	TGCA	2 cut(s)	83, 479
Hsp92II	CATG	5 cut(s)	464, 479, 568, 576, 584
KpnI	GGTACC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	178, 364, 450
LpnPI	CCDG	4 cut(s)	265, 457, 484, 528
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	180, 366, 452
MboI	GATC	3 cut(s)	178, 364, 450
MboII	GAAGA	2 cut(s)	500, 536
MfeI	CAATTG	2 cut(s)	138, 261
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	5 cut(s)	138, 261, 296, 426, 527
MlyI	GAGTC	4 cut(s)	134, 251, 557, 642
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	75, 217, 378, 529, 599
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	6 cut(s)	45, 59, 195, 209, 336, 425
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	2 cut(s)	138, 261
MvaI	CCWGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	178, 364, 450
NlaIII	CATG	5 cut(s)	464, 479, 568, 576, 584
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	3 cut(s)	464, 479, 568
PaeI	GCATGC	2 cut(s)	464, 479
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	4 cut(s)	133, 250, 556, 641
PpsI	GAGTC	4 cut(s)	133, 250, 556, 641
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	107, 433
RsaNI	GTAC	2 cut(s)	106, 432
SaqAI	TTAA	6 cut(s)	45, 59, 195, 209, 336, 425
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	3 cut(s)	178, 364, 450
SchI	GAGTC	4 cut(s)	134, 251, 557, 642
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	6 cut(s)	162, 173, 228, 391, 411, 591
SphI	GCATGC	2 cut(s)	464, 479
Sse9I	AATT	5 cut(s)	138, 261, 296, 426, 527
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	361, 518
TaqI	TCGA	2 cut(s)	123, 363
TasI	AATT	5 cut(s)	138, 261, 296, 426, 527
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	6 cut(s)	45, 59, 195, 209, 336, 425
Tru9I	TTAA	6 cut(s)	45, 59, 195, 209, 336, 425
TscAI	CASTG	2 cut(s)	328, 523
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	17, 87, 339, 408, 537
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	328, 523
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	3 cut(s)	464, 479, 568
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.