Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

1729493 .. 1731879

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAGGCTGACATTGTCAAGGAGGAACACCTGTTTGTTGAGGAGAGCAAGAAATGGGTGGCGGATAACCGGAATCTCTATAGTGACATGAATCAGTTTTTTGTCGAAAGATGTCAATGGGAAACTGAGTTTAAGGAAAACCACTTAAAGCCTCTCTATGAAGAGAGATGTAATGTTGCTAAAGGAATCCCTAGCTTTTGGCATACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATAAGGAGGCTCTGAACTTTCTGAATGATATCGAGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACGATCGTAATCCTTATTTTAAGAATAAGGTCTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGGACTAAAATTGACTGGTATCCTTCTCAAAACTTAATACAGGGTAAAAGCAGTGACAGTTTCTTCAAGTTCTTTAATTCATATGCTTCTCTCGATCCTCTTTCTTTTGACAACGAAGCTGATGAACTCAAAGGCGACATTCCGACGGATTATGCAATTGGTATGAAGTTTCGAGACAAGATCATTCCGCATGCTATATCATGGTATAAATTTGCAGAGAAGATGATGGTGATTATGATGATAGTGATGGCAAATGTGAGCGTTGCTCAAGGTGGTAGATATGGAAGAGTCGTAGAGGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

243

Amino Acids

28.42

Weight (kDa)

5.71

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	24 - 211	2.9e-35	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 614
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	310, 418, 493
AhdI	GACNNNNNGTC	1 cut(s)	403
AluBI	AGCT	3 cut(s)	195, 322, 545
AluI	AGCT	3 cut(s)	195, 322, 545
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AsuHPI	GGTGA	3 cut(s)	322, 400, 667
BccI	CCATC	3 cut(s)	220, 646, 667
BciVI	GTATCC	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	456
BmeRI	GACNNNNNGTC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	676, 708
BpmI	CTGGAG	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	403, 446
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	345
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	403, 446
BseRI	GAGGAG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	274, 442
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	2 cut(s)	274, 442
Bsp143I	GATC	3 cut(s)	340, 520, 606
BspACI	CCGC	2 cut(s)	62, 614
BspCNI	CTCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	403, 446
BssMI	GATC	3 cut(s)	340, 520, 606
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	156, 706
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	6, 618
BstDEI	CTNAG	2 cut(s)	126, 234
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	343, 523, 609
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	340, 520, 606
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	6, 618
CviAII	CATG	3 cut(s)	88, 617, 627
CviJI	RGCY	7 cut(s)	8, 151, 195, 263, 322, 545, 725
CviKI_1	RGCY	7 cut(s)	8, 151, 195, 263, 322, 545, 725
DdeI	CTNAG	2 cut(s)	126, 234
DpnI	GATC	3 cut(s)	342, 522, 608
DpnII	GATC	3 cut(s)	340, 520, 606
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	156, 706
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	2 cut(s)	156, 706
EciI	GGCGGA	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	283
FaeI	CATG	3 cut(s)	91, 620, 630
FaqI	GGGAC	2 cut(s)	274, 442
FatI	CATG	3 cut(s)	87, 616, 626
FauNDI	CATATG	1 cut(s)	508
FokI	GGATG	1 cut(s)	407
FspBI	CTAG	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	344
HapII	CCGG	1 cut(s)	70
Hin1II	CATG	3 cut(s)	91, 620, 630
HinfI	GANTC	5 cut(s)	73, 91, 186, 287, 714
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	3 cut(s)	322, 400, 667
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	267, 276, 570
Hpy188III	TCNNGA	3 cut(s)	370, 518, 599
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	385, 412, 459
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	5 cut(s)	4, 209, 245, 581, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	126, 234
Hsp92II	CATG	3 cut(s)	91, 620, 630
Kzo9I	GATC	3 cut(s)	340, 520, 606
LpnPI	CCDG	6 cut(s)	44, 83, 308, 416, 427, 452
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	83, 479
MalI	GATC	3 cut(s)	342, 522, 608
MboI	GATC	3 cut(s)	340, 520, 606
MboII	GAAGA	4 cut(s)	173, 481, 658, 723
MfeI	CAATTG	1 cut(s)	582
MluCI	AATT	4 cut(s)	435, 502, 582, 635
MlyI	GAGTC	2 cut(s)	296, 723
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	7 cut(s)	16, 34, 162, 253, 379, 534, 715
MseI	TTAA	5 cut(s)	132, 146, 357, 461, 501
MspI	CCGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	340, 520, 606
NlaIII	CATG	3 cut(s)	91, 620, 630
NmuCI	GTSAC	2 cut(s)	83, 479
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	73, 91, 186
PflFI	GACNNNGTC	1 cut(s)	14
Ple19I	CGATCG	1 cut(s)	343
PleI	GAGTC	2 cut(s)	295, 722
PpsI	GAGTC	2 cut(s)	295, 722
PsyI	GACNNNGTC	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	343
SaqAI	TTAA	5 cut(s)	132, 146, 357, 461, 501
Sau3AI	GATC	3 cut(s)	340, 520, 606
SchI	GAGTC	2 cut(s)	296, 723
SetI	ASST	8 cut(s)	33, 197, 324, 335, 369, 390, 547, 700
SfcI	CTRYAG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	4 cut(s)	435, 502, 582, 635
SsiI	CCGC	2 cut(s)	62, 614
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	4 cut(s)	105, 285, 519, 598
TasI	AATT	4 cut(s)	435, 502, 582, 635
TfiI	GAWTC	3 cut(s)	73, 91, 186
Tru1I	TTAA	5 cut(s)	132, 146, 357, 461, 501
Tru9I	TTAA	5 cut(s)	132, 146, 357, 461, 501
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	83, 479
Tsp45I	GTSAC	2 cut(s)	83, 479
TspDTI	ATGAA	6 cut(s)	104, 174, 402, 495, 564, 605
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	620
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.