Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012686

Physical Location & Seq

Genomic Coordinates Forward (+)

1881227 .. 1882543

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATCAGTTTTTTGTCGAAAGATGTCAATGGGAAACTGAGTTTAAGGAAAACCACTTAAAGCCTCTCTATGAAGAGAGATGTAATGTTGCTAAAGGAATCCCTAGCTTTTGGCATACTGCAATGATTGCTAACAAGATGGTTTCTAAGCAGATTGCAGAGAAAGATGAGGAGGCTCTGAACTTTCTGAATGATATCGGGTCCCGTAGGACAGCAGATTTGAAAGGATTTGAGCTGGAGTTCACCTTTGACAATCGTAATCCTTATTTTAATAATAAGGTCTTGACTAAAAAGTATGAGGTGAAGGATGACAACCAGTCTGTTTCATTGAAGGCATTAGGTATGAAGTTTCGAGACAATATCATTCCGCATGCTATATCATGGTATAAATTTGCAGAGAAGGATGATAGTGATGGCAAATGTGAGCGTTGCTCAAGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

147

Amino Acids

17.44

Weight (kDa)

6.83

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	19 - 105	3e-24	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012686)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087421 RchiOBHm_Chr3g0447701
rosa_laevigata	RLG00000015865 RLG00000025977
rosa_multiflora	Rmu_ssc0000391.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153550 Rroxscaffold_6G00425880 Rroxscaffold_6G00425900
rosa_rugosa	Rorug01G0475300 Rorug02G0604700
rosa_samantha	Rh2BG028900 Rh2DG028700 Rh3AG004300 Rh3AG004500 Rh3BG003900 Rh3CG004400 Rh3DG004300
rosa_wichuraiana	Rw2G002280 Rw3G000320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	223, 331
AhdI	GACNNNNNGTC	1 cut(s)	316
AluBI	AGCT	2 cut(s)	108, 235
AluI	AGCT	2 cut(s)	108, 235
Alw26I	GTCTC	1 cut(s)	348
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	235, 313
AvaII	GGWCC	1 cut(s)	201
BccI	CCATC	2 cut(s)	133, 407
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	201
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	202, 203
BplI	GAGNNNNNCTC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	313, 409
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	202, 203
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	39, 147
BstF5I	GGATG	2 cut(s)	313, 409
BstMAI	GTCTC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	313, 409
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	201
CviAII	CATG	2 cut(s)	371, 381
CviJI	RGCY	4 cut(s)	64, 108, 176, 235
CviKI_1	RGCY	4 cut(s)	64, 108, 176, 235
DdeI	CTNAG	2 cut(s)	39, 147
DriI	GACNNNNNGTC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	196
FaeI	CATG	2 cut(s)	374, 384
FaiI	YATR	8 cut(s)	72, 117, 297, 344, 372, 377, 382, 387
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	370, 380
FokI	GGATG	2 cut(s)	320, 416
FspBI	CTAG	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	374, 384
HinfI	GANTC	2 cut(s)	4, 99
HphI	GGTGA	2 cut(s)	235, 313
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	180, 189
Hpy188III	TCNNGA	2 cut(s)	283, 353
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	298, 325, 394
HpyCH4V	TGCA	3 cut(s)	122, 158, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	39, 147
Hsp92II	CATG	2 cut(s)	374, 384
KflI	GGGWCCC	1 cut(s)	201
LpnPI	CCDG	2 cut(s)	221, 329
MaeI	CTAG	1 cut(s)	105
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	1 cut(s)	389
MnlI	CCTC	4 cut(s)	75, 163, 166, 292
MseI	TTAA	3 cut(s)	45, 59, 270
MwoI	GCNNNNNNNGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	374, 384
NlaIV	GGNNCC	2 cut(s)	202, 203
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	4, 99
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	202, 203
PspPI	GGNCC	1 cut(s)	201
PspPPI	RGGWCCY	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	45, 59, 270
Sau96I	GGNCC	1 cut(s)	201
SetI	ASST	7 cut(s)	110, 237, 248, 282, 303, 343, 440
SinI	GGWCC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	105
TaqI	TCGA	2 cut(s)	18, 352
TasI	AATT	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	4, 99
Tru1I	TTAA	3 cut(s)	45, 59, 270
Tru9I	TTAA	3 cut(s)	45, 59, 270
TspDTI	ATGAA	4 cut(s)	17, 87, 315, 359
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.