Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Forward (+)

3771471 .. 3773035

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGAATGACCAACCATATATGATAGCTTTGCTCTGTTTCTCTTCACTCATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCCAAACACTCCATACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTGATCTGTCCAAATCCTACTTCAATCAGATGTCCAAGCAGAGCCAAATTCAAGAAGCCGTGGACTTGCTCATCCATATGGACCTCAACAGCCTCCACATGGGGCCCGAAATCTACGGCCAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACTGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGCTGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTGATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGTTTGTTTAGAAGGGTGAGATTGAAAAATGTGTATTCTTGGGCTGCAATTGTTGGATTGAATTGTAGATTGGGTTTTTACAAAGACGCCTTGCTAGGGTTTATGGAAATGCATGAAGATGGGTTGTTTCCGGATAATTTTGTGGTTCCGAATGTGCTGAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGCAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGATGCGAGGAAGGTGTTTGATGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTGGTGAGTTATGTGCAAAATGGATTGAATGAGGATGCTATCAAGGTGTTTTGTGATATGAGGGAGCAAGGCGTTGAACCCACTCATGTGACTGTGTCTGGCTTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGTGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATTAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGATGTTGATAAAGGTCTTGATATGTGCCGCTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTATGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTTCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATTACGCAAGACGAGCTTTCGAATCTGCAACAACTAGAGATCTTGTACTGTGGAACACGCTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

485

Amino Acids

53.97

Weight (kDa)

6.08

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	263 - 309	1.8e-11	PPR repeat family
PPR_3	PF13812	263 - 307	5.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	266 - 296	2.3e-07	PPR repeat
PPR_2	PF13041	364 - 412	3.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1449
AccI	GTMKAC	2 cut(s)	321, 1329
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	3 cut(s)	627, 1168, 1424
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
AcuI	CTGAAG	2 cut(s)	293, 638
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	2 cut(s)	401, 1404
AfiI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
AhlI	ACTAGT	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	8 cut(s)	185, 217, 512, 544, 992, 1024, 1403, 1435
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	7 cut(s)	26, 154, 304, 332, 382, 452, 1373
AluI	AGCT	7 cut(s)	26, 154, 304, 332, 382, 452, 1373
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	1171
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	2 cut(s)	284, 298
ApaI	GGGCCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	304, 503
ApoI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
AspLEI	GCGC	2 cut(s)	946, 1270
AspS9I	GGNCC	3 cut(s)	262, 284, 285
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	5 cut(s)	389, 487, 829, 1216, 1313
AsuII	TTCGAA	2 cut(s)	455, 1377
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	288, 334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	291, 490
BccI	CCATC	5 cut(s)	139, 437, 572, 628, 676
BceAI	ACGGC	2 cut(s)	224, 313
BclI	TGATCA	1 cut(s)	795
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	1171
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
BglII	AGATCT	1 cut(s)	1396
BisI	GCNGC	4 cut(s)	305, 504, 1168, 1425
BlsI	GCNGC	4 cut(s)	306, 505, 1169, 1426
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	262, 284, 285
BmiI	GGNNCC	3 cut(s)	285, 286, 606
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
BmtI	GCTAGC	1 cut(s)	714
Bpu14I	TTCGAA	2 cut(s)	455, 1377
BpuEI	CTTGAG	2 cut(s)	1210, 1316
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	240, 1038
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
Bse1I	ACTGG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	589
BseDI	CCNNGG	2 cut(s)	240, 1038
BseGI	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BseLI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	291, 490
BshFI	GGCC	2 cut(s)	286, 300
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	361, 590
BslI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
BsmAI	GTCTC	1 cut(s)	1171
BsnI	GGCC	2 cut(s)	286, 300
Bsp119I	TTCGAA	2 cut(s)	455, 1377
Bsp120I	GGGCCC	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	288, 334
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	184, 420, 795, 1396
BspACI	CCGC	3 cut(s)	627, 1168, 1424
BspANI	GGCC	2 cut(s)	286, 300
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	285, 286, 606
BspOI	GCTAGC	1 cut(s)	714
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	2 cut(s)	455, 1377
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	240, 1038
BssMI	GATC	4 cut(s)	184, 420, 795, 1396
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	1038
Bst4CI	ACNGT	3 cut(s)	907, 1274, 1407
Bst6I	CTCTTC	3 cut(s)	46, 97, 339
BstACI	GRCGYC	1 cut(s)	546
BstBI	TTCGAA	2 cut(s)	455, 1377
BstC8I	GCNNGC	5 cut(s)	302, 330, 625, 712, 969
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BstHHI	GCGC	2 cut(s)	946, 1270
BstKTI	GATC	4 cut(s)	187, 423, 798, 1399
BstMAI	GTCTC	1 cut(s)	1171
BstMBI	GATC	4 cut(s)	184, 420, 795, 1396
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	291, 490
BstX2I	RGATCY	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	1396
BsuRI	GGCC	2 cut(s)	286, 300
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	2 cut(s)	453, 647
BtsCI	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BtsIMutI	CAGTG	1 cut(s)	1270
Cac8I	GCNNGC	5 cut(s)	302, 330, 625, 712, 969
CfoI	GCGC	2 cut(s)	946, 1270
Cfr13I	GGNCC	3 cut(s)	262, 284, 285
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	400, 1403
CviAII	CATG	8 cut(s)	49, 280, 572, 665, 801, 899, 968, 1104
CviQI	GTAC	2 cut(s)	400, 1403
DpnI	GATC	4 cut(s)	186, 422, 797, 1398
DpnII	GATC	4 cut(s)	184, 420, 795, 1396
DrdI	GACNNNNNNGTC	1 cut(s)	1449
DseDI	GACNNNNNNGTC	1 cut(s)	1449
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	46, 97, 339
EarI	CTCTTC	3 cut(s)	46, 97, 339
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	1038
Eco24I	GRGCYC	2 cut(s)	288, 334
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	293, 638
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	1038
EcoT22I	ATGCAT	2 cut(s)	573, 973
EcoT38I	GRGCYC	2 cut(s)	288, 334
ErhI	CCWWGG	1 cut(s)	1038
FaeI	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
FalI	AAGNNNNNCTT	2 cut(s)	1357, 1389
FatI	CATG	8 cut(s)	48, 279, 571, 664, 800, 898, 967, 1103
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	795
FblI	GTMKAC	2 cut(s)	321, 1329
Fnu4HI	GCNGC	4 cut(s)	305, 504, 1168, 1425
FokI	GGATG	8 cut(s)	82, 239, 764, 860, 1070, 1093, 1154, 1201
FriOI	GRGCYC	2 cut(s)	288, 334
Fsp4HI	GCNGC	4 cut(s)	305, 504, 1168, 1425
FspBI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
GlaI	GCGC	2 cut(s)	945, 1269
GluI	GCNGC	4 cut(s)	305, 504, 1168, 1425
HaeIII	GGCC	2 cut(s)	286, 300
HapII	CCGG	2 cut(s)	361, 590
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	2 cut(s)	946, 1270
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
Hin6I	GCGC	2 cut(s)	944, 1268
HinP1I	GCGC	2 cut(s)	944, 1268
HindIII	AAGCTT	2 cut(s)	152, 450
HinfI	GANTC	5 cut(s)	175, 457, 1199, 1207, 1379
HpaII	CCGG	2 cut(s)	361, 590
HphI	GGTGA	5 cut(s)	389, 487, 829, 1216, 1313
Hpy166II	GTNNAC	4 cut(s)	244, 322, 989, 1330
Hpy188I	TCNGA	2 cut(s)	210, 609
Hpy188III	TCNNGA	6 cut(s)	158, 233, 370, 590, 679, 1157
Hpy8I	GTNNAC	4 cut(s)	244, 322, 989, 1330
HpyAV	CCTTC	4 cut(s)	465, 613, 757, 947
HpyCH4III	ACNGT	3 cut(s)	907, 1274, 1407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
HspAI	GCGC	2 cut(s)	944, 1268
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	184, 420, 795, 1396
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	2 cut(s)	291, 490
LweI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
MaeI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
MaeIII	GTNAC	3 cut(s)	901, 1099, 1204
MalI	GATC	4 cut(s)	186, 422, 797, 1398
MboI	GATC	4 cut(s)	184, 420, 795, 1396
MboII	GAAGA	5 cut(s)	33, 84, 326, 587, 962
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	1396
MhlI	GDGCHC	2 cut(s)	288, 334
MlyI	GAGTC	2 cut(s)	1193, 1201
MmeI	TCCRAC	1 cut(s)	493
Mph1103I	ATGCAT	2 cut(s)	573, 973
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	2 cut(s)	1026, 1172
MslI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	2 cut(s)	361, 590
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
NciI	CCSGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	4 cut(s)	184, 420, 795, 1396
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
NlaIV	GGNNCC	3 cut(s)	285, 286, 606
NmuCI	GTSAC	2 cut(s)	901, 1204
NsiI	ATGCAT	2 cut(s)	573, 973
NspI	RCATGY	1 cut(s)	971
NspV	TTCGAA	2 cut(s)	455, 1377
OliI	CACNNNNGTG	1 cut(s)	899
PaeI	GCATGC	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	175, 457, 1379
PflFI	GACNNNGTC	1 cut(s)	907
PkrI	GCNGC	4 cut(s)	306, 505, 1169, 1426
PleI	GAGTC	2 cut(s)	1193, 1201
PpsI	GAGTC	2 cut(s)	1193, 1201
Psp124BI	GAGCTC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	285, 286, 606
PspOMI	GGGCCC	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	262, 284, 285
PsuI	RGATCY	1 cut(s)	1396
PsyI	GACNNNGTC	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	401, 1404
RsaNI	GTAC	2 cut(s)	400, 1403
RseI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	1026, 1172
SatI	GCNGC	4 cut(s)	305, 504, 1168, 1425
Sau3AI	GATC	4 cut(s)	184, 420, 795, 1396
Sau96I	GGNCC	3 cut(s)	262, 284, 285
SchI	GAGTC	2 cut(s)	1193, 1201
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	288, 334
SfaNI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
SfuI	TTCGAA	2 cut(s)	455, 1377
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
SmlI	CTYRAG	2 cut(s)	1189, 1295
SmoI	CTYRAG	2 cut(s)	1189, 1295
SpeI	ACTAGT	1 cut(s)	415
SphI	GCATGC	1 cut(s)	971
SsiI	CCGC	3 cut(s)	627, 1168, 1424
SspMI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	1038
TaaI	ACNGT	3 cut(s)	907, 1274, 1407
TaqI	TCGA	3 cut(s)	455, 809, 1377
TatI	WGTACW	2 cut(s)	399, 1402
TauI	GCSGC	2 cut(s)	1170, 1427
TfiI	GAWTC	3 cut(s)	175, 457, 1379
Tru1I	TTAA	2 cut(s)	1026, 1172
Tru9I	TTAA	2 cut(s)	1026, 1172
TscAI	CASTG	1 cut(s)	1277
TseFI	GTSAC	2 cut(s)	901, 1204
TseI	GCWGC	2 cut(s)	304, 503
Tsp45I	GTSAC	2 cut(s)	901, 1204
TspDTI	ATGAA	6 cut(s)	17, 84, 588, 653, 789, 1097
TspRI	CASTG	1 cut(s)	1277
Tth111I	GACNNNGTC	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	2 cut(s)	321, 1329
XspI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
Zsp2I	ATGCAT	2 cut(s)	573, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.