RchiOBHm_Chr2g0095671

21 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014269
Physical Location & Seq
Reverse (-)
8600611 .. 8601372
762 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGATGCGTTTCACTCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTCATACTCTGCCATCGCACGTAAACCAAGCTCTCACAATGCCACCATCTCCTCCTCCCACCTCGTCCGTATGTCATGCCAACACGCTAGCTACCCCAACCTCTGCCTCCACACGCTCTCCGCCTTCCCGGCCCAAACCCCTCGCGACCTGGCCCAGGTTGCCGTCGGCTTCTCCCTCTCCCGAGCCCGTAAAGTTTCCGCCTTCCTCTCCCAGCTCTCCCATTCCTCCTCCTCCCCGAAAGTGGCAGCGTGTGGCTGTCGGCGATTGGGTGGAGCAGGTCTCGAACTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0030234 GO:0043086 GO:0044092 GO:0048509 GO:0050789 GO:0050790 GO:0050793 GO:0065007 GO:0065009 GO:0098772 GO:1902183
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

117

Amino Acids

12.6

Weight (kDa)

10.88

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 41 - 98 3.4e-11 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014269)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20740 AT5G20740
fragaria_vesca FvH4_1g09220
malus_domestica MD02G1099200.v1.1 MD15G1222000.v1.1
prunus_persica Prupe.7G193700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0095671 RchiOBHm_Chr2g0095741
rosa_laevigata RLG00000016589
rosa_multiflora Rmu_co8375965.1_g000001
rosa_roxburghii Rroxscaffold_2G00146130
rosa_rugosa Rorug02G0053000
rosa_samantha Rh2AG101300 Rh2BG102900 Rh2CG105300 Rh2DG102700
rosa_wichuraiana Rw2G007680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccII CGCG 1 cut(s) 204
AciI CCGC 2 cut(s) 180, 258
AfiI CCNNNNNNNGG 2 cut(s) 214, 301
AjnI CCWGG 2 cut(s) 207, 213
AluBI AGCT 3 cut(s) 90, 150, 274
AluI AGCT 3 cut(s) 90, 150, 274
Alw26I GTCTC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 189, 210
ApeKI GCWGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 190, 211
AsuC2I CCSGG 1 cut(s) 188
AsuNHI GCTAGC 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 240
BanII GRGCYC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 317
BccI CCATC 2 cut(s) 80, 113
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 209, 215
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 3 cut(s) 188, 209, 215
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 190, 211
BmrFI CCNGG 3 cut(s) 188, 209, 215
BmtI GCTAGC 1 cut(s) 150
BplI GAGNNNNNCTC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 301
BseBI CCWGG 2 cut(s) 209, 215
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 214, 301
BseXI GCAGC 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 191, 212
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 214, 301
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 2 cut(s) 191, 212
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 247
Bsp68I TCGCGA 1 cut(s) 204
BspACI CCGC 2 cut(s) 180, 258
BspANI GGCC 2 cut(s) 191, 212
BspFNI CGCG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 209, 215
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 212
BstFNI CGCG 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 188, 218
BstNI CCWGG 2 cut(s) 209, 215
BstSCI CCNGG 3 cut(s) 186, 207, 213
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 317
BsuRI GGCC 2 cut(s) 191, 212
BtgZI GCGATG 1 cut(s) 58
BtuMI TCGCGA 1 cut(s) 204
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 190, 211
CviAII CATG 1 cut(s) 135
CviJI RGCY 8 cut(s) 90, 150, 191, 212, 228, 245, 274, 315
CviKI_1 RGCY 8 cut(s) 90, 150, 191, 212, 228, 245, 274, 315
EciI GGCGGA 2 cut(s) 169, 247
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 207, 213
EcoT38I GRGCYC 1 cut(s) 247
FaeI CATG 1 cut(s) 138
FaiI YATR 3 cut(s) 64, 131, 136
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 191, 212
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 138
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 3 cut(s) 203, 240, 341
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 65, 193, 271
HpyCH4IV ACGT 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 218
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 138
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 7 cut(s) 194, 200, 201, 221, 227, 284, 321
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 247
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 3 cut(s) 188, 209, 215
MvaI CCWGG 2 cut(s) 209, 215
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 188, 218
NciI CCSGG 1 cut(s) 188
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 138
NruI TCGCGA 1 cut(s) 204
PkrI GCNGC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 207, 213
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 2 cut(s) 207, 213
PspPI GGNCC 2 cut(s) 190, 211
RruI TCGCGA 1 cut(s) 204
SatI GCNGC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 190, 211
ScrFI CCNGG 3 cut(s) 188, 209, 215
SduI GDGCHC 1 cut(s) 247
SetI ASST 9 cut(s) 82, 92, 123, 152, 162, 210, 219, 276, 340
SsiI CCGC 2 cut(s) 180, 258
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 186, 207, 213
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 342
TseI GCWGC 1 cut(s) 305
TspGWI ACGGA 2 cut(s) 116, 338
XagI CCTNNNNNAGG 1 cut(s) 212
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.