RchiOBHm_Chr2g0099821

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009643
Physical Location & Seq
Reverse (-)
11907098 .. 11907706
609 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCTAATCATCTCCGTTTTGATATTTATGATTTGGAACTCACTAGCATTTCCAGCAACGATGAATTGAGGAAGGCCTTGATGTCTACTACGAATCGTTCTATTGTGGTGTTTGAGGATATTGATTGCAGCAAGGAATCCGTAAACCGGGAATCAGCAGAGAGCAAGAACTTTATGGTTTCCAAAGCCGAATCCAAGTTTACACTCTCGGGTCTGCTGAATGTCGTTGATGGTCTGTGGTCAAGTTGCGGTGATGAGAGAATTATTGTCTTCACCACCAACCACAAGGAGCGGCTAGAACCTGCATTGTTGAGGCCTGGTCGAATGGATGTACGCATTCACATGTCGTATTGCACCCCAAGAGGGTTCAAGACCTTAGCCTCGAACTACCTCGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

133

Amino Acids

15.08

Weight (kDa)

6.29

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 3 - 116 1.1e-08 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 86
AciI CCGC 2 cut(s) 249, 292
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 147, 363
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 75, 314
ApeKI GCWGC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 263, 265
AvaI CYCGRG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 2 cut(s) 45, 296
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 130, 293
BlsI GCNGC 2 cut(s) 131, 294
Bme1390I CCNGG 2 cut(s) 149, 318
BmeT110I CYCGRG 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 149, 318
BpiI GAAGAC 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 363
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 147, 363
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 77, 316
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 147, 363
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 2 cut(s) 77, 316
BsoBI CYCGRG 1 cut(s) 208
BspACI CCGC 2 cut(s) 249, 292
BspANI GGCC 2 cut(s) 77, 316
BspMI ACCTGC 1 cut(s) 310
BsrBI CCGCTC 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 147, 316
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 77, 316
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 343
CviJI RGCY 6 cut(s) 5, 77, 188, 295, 316, 380
CviKI_1 RGCY 6 cut(s) 5, 77, 188, 295, 316, 380
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 376
Eco147I AGGCCT 2 cut(s) 77, 316
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 346
FaiI YATR 3 cut(s) 30, 176, 344
FatI CATG 1 cut(s) 342
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 130, 293
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 130, 293
FspBI CTAG 2 cut(s) 45, 296
GluI GCNGC 2 cut(s) 130, 293
HaeIII GGCC 2 cut(s) 77, 316
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 346
HinfI GANTC 4 cut(s) 94, 137, 152, 191
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 263, 265
Hpy166II GTNNAC 3 cut(s) 87, 145, 201
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 3 cut(s) 87, 145, 201
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 129, 305, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 376
Hsp92II CATG 1 cut(s) 346
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 5 cut(s) 67, 161, 303, 315, 330
Lsp1109I GCAGC 1 cut(s) 141
MaeI CTAG 2 cut(s) 45, 296
MbiI CCGCTC 1 cut(s) 292
MboII GAAGA 1 cut(s) 262
MluCI AATT 2 cut(s) 65, 261
MnlI CCTC 6 cut(s) 63, 109, 306, 356, 391, 401
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 2 cut(s) 149, 318
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 149
NlaIII CATG 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 372
NspI RCATGY 1 cut(s) 346
PceI AGGCCT 2 cut(s) 77, 316
PciI ACATGT 1 cut(s) 342
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 4 cut(s) 94, 137, 152, 191
PkrI GCNGC 2 cut(s) 131, 294
PscI ACATGT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 341
SatI GCNGC 2 cut(s) 130, 293
ScrFI CCNGG 2 cut(s) 149, 318
SetI ASST 3 cut(s) 304, 377, 393
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 65, 261
SseBI AGGCCT 2 cut(s) 77, 316
SsiI CCGC 2 cut(s) 249, 292
SspMI CTAG 2 cut(s) 45, 296
StuI AGGCCT 2 cut(s) 77, 316
StyD4I CCNGG 2 cut(s) 147, 316
TaqI TCGA 2 cut(s) 322, 383
TasI AATT 2 cut(s) 65, 261
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 4 cut(s) 94, 137, 152, 191
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 2 cut(s) 5, 130
XceI RCATGY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 2 cut(s) 45, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.