Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006696

Physical Location & Seq

Genomic Coordinates Reverse (-)

17828879 .. 17829713

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTTTAGGGTTTATTGTTTTCCTAGAAGCTCATGGATTAGTGTTCTATATAATACGCCCCTTACATTGTATTTTCCATTTAAAGTTCAATCAACCCGAAAAACAAAATCTTTGTTTTGTTTACGGATCAAAAAAAAAAAACAATACATCGCAGCCATGTCGTCCAAGCAAGGTGGAAAAGCGAAGCCACTGAAGCAACCCAAGGCGGCGAAGAAGGAGTACGACGAGGAAGATTTGGCCAAGCTTCAGAAGAAGAAAGATGAGGAAAAGGCACTGAAGGAGCTCAAAGCCAAGGCCCAACAGAAGGGGACTTTTGGAGGAGCTGGCCTCAAGAAAAGTGGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TMA7

Protein Analysis

116

Amino Acids

13.27

Weight (kDa)

10.17

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TMA7	PF09072	55 - 116	2.6e-22	Translation machinery associated TMA7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15270 AT3G16040
fragaria_vesca	FvH4_1g16510
malus_domestica	MD17G1194100.v1.1
prunus_persica	Prupe.3G069900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106421 RchiOBHm_Chr2g0138111
rosa_multiflora	Rmu_sc0004015.1_g000002 Rmu_sc0016473.1_g000008
rosa_roxburghii	Rroxscaffold_2G00106460 Rroxscaffold_2G00137200
rosa_rugosa	Rorug02G0349700 Rorug07G0162500
rosa_samantha	Rh2AG186500 Rh2AG396300 Rh2BG196700 Rh2BG410300 Rh2CG191500 Rh2CG382800 Rh2DG192600 Rh2DG418000 Rh5AG147200 Rh5AG389200
rosa_wichuraiana	Rw2G014530 Rw2G032360 Rw2G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	3 cut(s)	212, 230, 296
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	4 cut(s)	30, 244, 283, 323
AluI	AGCT	4 cut(s)	30, 244, 283, 323
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	3 cut(s)	237, 294, 325
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	153, 207
BlsI	GCNGC	2 cut(s)	154, 208
BmgT120I	GGNCC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	201, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseDI	CCNNGG	2 cut(s)	201, 291
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	239, 296, 327
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	239, 296, 327
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	3 cut(s)	239, 296, 327
BspPI	GGATC	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	201, 291
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	201, 291
BstC8I	GCNNGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	239, 296, 327
BtgZI	GCGATG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	188, 272
Cac8I	GCNNGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	3 cut(s)	154, 189, 319
CviAII	CATG	2 cut(s)	33, 157
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	201, 291
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	3 cut(s)	212, 230, 296
EcoICRI	GAGCTC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	201, 291
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	201, 291
FaeI	CATG	2 cut(s)	36, 160
FaiI	YATR	4 cut(s)	34, 49, 51, 158
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	32, 156
Fnu4HI	GCNGC	2 cut(s)	153, 207
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	153, 207
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	2 cut(s)	153, 207
HaeIII	GGCC	3 cut(s)	239, 296, 327
Hin1II	CATG	2 cut(s)	36, 160
HindIII	AAGCTT	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	122
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	208, 271, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	36, 160
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	280, 320
LpnPI	CCDG	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	24
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	4 cut(s)	223, 242, 262, 265
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	4 cut(s)	220, 256, 311, 338
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	36, 160
PkrI	GCNGC	2 cut(s)	154, 208
Psp124BI	GAGCTC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	295
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	153, 207
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	32, 175, 246, 285, 325
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	201, 291
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	195, 279
TseI	GCWGC	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	195, 279
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.