Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

28825553 .. 28829495

Gene Structure 3943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGGCCAGAGCTGTGGTGAAGGGGTTTCAGTTTTGTACATGGATTGATTCAGAGAAGGTGAAGAGGAGACCCCCGAGTGGCTTGGCGCGGTTCTCGAGGAGATTGAAGGAGGAGCAAAGCAAACGTCATGTGCTTGTTGCAGCAGCTCACCTACCGAAATCGAATCGGCATCGACATGTTGCTGTGGATTACAACCACTGGAATCCAGCTTCACCAGTGGAATCTGGAAACTTTCATGCTCATTTTGATGAATCTTATGTTCTGAAGACTAAGTCCCAAGAGATTGAGCCATACTTAAAGGGACGCTGTATATATCTTGTTGGTATGATGGGCTCTGGGAAAACAACTGTTGGCAAGATTTTGGCACAGGCACTTAATTATTCATTTATTGATAGTGATACATTCGTGGAGCATGAGGCAGGTGGAAAAACTGTACCTGAAATTTTCAAGCTCTATGGAGAGGGTTTCTTTAGAGACAAGGAGACCGAGGCCCTACGAAAGCTGTCTATGATGCAACGTCATGTTGTCTCTACTGGTGGAGGTGCAGTAGTTCGGCCGGTCAACTGGAAATGTATGCAGAACGGGATTAGTGTATGGTTAGATGTACCCTTGGAAGCCTTGGCCCAGAGAATTGCAGATGTGGGAACTGGTTCTCGTCCTCTCTTGCATCAGGGGCCAGGAGATGCATACAGCAAAACCTTTATGCGTCTATCTAGTATTTTCGAAGAAAGAGGTGATGCATATGCCAATGCCAATGCTCGGGTTTCCGTGGAAAATATTGCAGCCAAAATGGGTTGTAGGGATGTATCCAATCTCTCACCTACTGCTATTGCTCTTGAGGCACTTCAACAAATTGAAGGCTTTCTGGAGGAAGAGAGAGGCCGTGCCCGTGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

300

Amino Acids

33.51

Weight (kDa)

9.2

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	105 - 216	1.4e-09	AAA domain
SKI	PF01202	111 - 264	1.6e-42	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccII	CGCG	1 cut(s)	91
AciI	CCGC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	3 cut(s)	40, 438, 609
AfiI	CCNNNNNNNGG	2 cut(s)	80, 762
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	4 cut(s)	109, 451, 851, 860
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	5 cut(s)	14, 149, 212, 454, 505
AluI	AGCT	5 cut(s)	14, 149, 212, 454, 505
Alw26I	GTCTC	4 cut(s)	64, 471, 479, 535
Ama87I	CYCGRG	3 cut(s)	76, 97, 762
AoxI	GGCC	6 cut(s)	6, 492, 557, 624, 677, 883
ApeKI	GCWGC	3 cut(s)	143, 146, 785
ApoI	RAATTY	1 cut(s)	444
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	2 cut(s)	652, 864
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	493, 625, 677
AsuHPI	GGTGA	6 cut(s)	31, 73, 143, 207, 749, 813
AsuII	TTCGAA	1 cut(s)	726
AvaI	CYCGRG	3 cut(s)	76, 97, 762
BaeGI	GKGCMC	1 cut(s)	892
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	155, 158, 797
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	1 cut(s)	681
BciVI	GTATCC	1 cut(s)	820
BcoDI	GTCTC	4 cut(s)	64, 471, 479, 535
BfaI	CTAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	820
BisI	GCNGC	3 cut(s)	144, 147, 786
BlsI	GCNGC	3 cut(s)	145, 148, 787
Bme1390I	CCNGG	1 cut(s)	681
BmeT110I	CYCGRG	3 cut(s)	76, 97, 762
BmgT120I	GGNCC	3 cut(s)	493, 625, 677
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	5 cut(s)	181, 504, 676, 679, 730
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	890
Bpu14I	TTCGAA	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	860
BsaI	GGTCTC	2 cut(s)	64, 479
BsaJI	CCNNGG	4 cut(s)	489, 612, 621, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 762
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	5 cut(s)	206, 218, 541, 572, 655
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	489, 612, 621, 771
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	2 cut(s)	80, 762
BseNI	ACTGG	5 cut(s)	206, 218, 541, 572, 655
BseRI	GAGGAG	3 cut(s)	82, 115, 128
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	155, 158, 797
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	560
BshFI	GGCC	6 cut(s)	8, 494, 559, 626, 679, 885
BsiEI	CGRYCG	1 cut(s)	560
BsiHKCI	CYCGRG	3 cut(s)	76, 97, 762
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	2 cut(s)	262, 318
BslI	CCNNNNNNNGG	2 cut(s)	80, 762
BsmAI	GTCTC	4 cut(s)	64, 471, 479, 535
BsmFI	GGGAC	2 cut(s)	262, 318
BsnI	GGCC	6 cut(s)	8, 494, 559, 626, 679, 885
Bso31I	GGTCTC	2 cut(s)	64, 479
BsoBI	CYCGRG	3 cut(s)	76, 97, 762
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	2 cut(s)	338, 892
Bsp1407I	TGTACA	1 cut(s)	38
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	6 cut(s)	8, 494, 559, 626, 679, 885
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	678
BspMI	ACCTGC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	726
BspTNI	GGTCTC	2 cut(s)	64, 479
BsrFI	RCCGGY	1 cut(s)	559
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	5 cut(s)	206, 218, 541, 572, 655
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	4 cut(s)	489, 612, 621, 771
BssT1I	CCWWGG	2 cut(s)	612, 621
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	352, 436
Bst6I	CTCTTC	2 cut(s)	59, 870
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	726
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	91
BstMAI	GTCTC	4 cut(s)	64, 471, 479, 535
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	2 cut(s)	676, 842
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	679
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	155, 158, 797
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	6 cut(s)	8, 494, 559, 626, 679, 885
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	2 cut(s)	199, 225
BveI	ACCTGC	1 cut(s)	413
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	3 cut(s)	493, 625, 677
CseI	GACGC	2 cut(s)	315, 698
Csp6I	GTAC	3 cut(s)	39, 437, 608
CviAII	CATG	6 cut(s)	42, 131, 179, 239, 416, 524
CviQI	GTAC	3 cut(s)	39, 437, 608
DdeI	CTNAG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	557
EagI	CGGCCG	1 cut(s)	557
Eam1104I	CTCTTC	2 cut(s)	59, 870
EarI	CTCTTC	2 cut(s)	59, 870
EclXI	CGGCCG	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	612, 621
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	64, 479
Eco52I	CGGCCG	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	3 cut(s)	76, 97, 762
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	612, 621
EcoT22I	ATGCAT	2 cut(s)	691, 745
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	2 cut(s)	612, 621
FaeI	CATG	6 cut(s)	45, 134, 182, 242, 419, 527
FaqI	GGGAC	2 cut(s)	262, 318
FatI	CATG	6 cut(s)	41, 130, 178, 238, 415, 523
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	3 cut(s)	144, 147, 786
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	144, 147, 786
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	144, 147, 786
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	6 cut(s)	8, 494, 559, 626, 679, 885
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	2 cut(s)	315, 698
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	6 cut(s)	45, 134, 182, 242, 419, 527
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	5 cut(s)	50, 166, 205, 224, 254
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	6 cut(s)	31, 73, 143, 207, 749, 813
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	55, 267
Hpy188III	TCNNGA	4 cut(s)	97, 228, 839, 869
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	4 cut(s)	16, 52, 103, 854
HpyCH4III	ACNGT	2 cut(s)	352, 436
HpyCH4IV	ACGT	2 cut(s)	127, 520
HpyCH4V	TGCA	9 cut(s)	143, 517, 548, 580, 638, 670, 689, 743, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	676, 842
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	127, 520
Hsp92II	CATG	6 cut(s)	45, 134, 182, 242, 419, 527
HspAI	GCGC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	115, 412
Lsp1109I	GCAGC	3 cut(s)	155, 158, 797
LweI	GCATC	5 cut(s)	181, 504, 676, 679, 730
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	2 cut(s)	127, 520
MboII	GAAGA	4 cut(s)	76, 280, 740, 887
MhlI	GDGCHC	2 cut(s)	338, 892
MluCI	AATT	4 cut(s)	379, 444, 633, 855
Mph1103I	ATGCAT	2 cut(s)	691, 745
MroXI	GAANNNNTTC	2 cut(s)	652, 864
MseI	TTAA	3 cut(s)	299, 378, 901
MslI	CAYNNNNRTG	2 cut(s)	177, 249
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	2 cut(s)	676, 842
NdeI	CATATG	1 cut(s)	745
NlaIII	CATG	6 cut(s)	45, 134, 182, 242, 419, 527
NlaIV	GGNNCC	1 cut(s)	678
NsiI	ATGCAT	2 cut(s)	691, 745
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	413
PciI	ACATGT	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	652, 864
PfeI	GAWTC	5 cut(s)	50, 166, 205, 224, 254
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	145, 148, 787
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	3 cut(s)	493, 625, 677
PsyI	GACNNNGTC	1 cut(s)	274
RsaI	GTAC	3 cut(s)	40, 438, 609
RsaNI	GTAC	3 cut(s)	39, 437, 608
RseI	CAYNNNNRTG	2 cut(s)	177, 249
SaqAI	TTAA	3 cut(s)	299, 378, 901
SatI	GCNGC	3 cut(s)	144, 147, 786
Sau96I	GGNCC	3 cut(s)	493, 625, 677
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	2 cut(s)	338, 892
SfaNI	GCATC	5 cut(s)	181, 504, 676, 679, 730
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	726
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	177, 249
SmlI	CTYRAG	2 cut(s)	97, 839
SmoI	CTYRAG	2 cut(s)	97, 839
Sse9I	AATT	4 cut(s)	379, 444, 633, 855
SsiI	CCGC	1 cut(s)	91
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	2 cut(s)	612, 621
TaaI	ACNGT	2 cut(s)	352, 436
TaiI	ACGT	2 cut(s)	130, 523
TaqI	TCGA	4 cut(s)	98, 164, 175, 726
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	379, 444, 633, 855
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	5 cut(s)	50, 166, 205, 224, 254
Tru1I	TTAA	3 cut(s)	299, 378, 901
Tru9I	TTAA	3 cut(s)	299, 378, 901
TscAI	CASTG	2 cut(s)	206, 225
TseI	GCWGC	3 cut(s)	143, 146, 785
TspDTI	ATGAA	3 cut(s)	227, 267, 375
TspGWI	ACGGA	1 cut(s)	760
TspRI	CASTG	2 cut(s)	206, 225
Tth111I	GACNNNGTC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	444
XceI	RCATGY	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	97
XmnI	GAANNNNTTC	2 cut(s)	652, 864
XspI	CTAG	1 cut(s)	717
Zsp2I	ATGCAT	2 cut(s)	691, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.