Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003599

Physical Location & Seq

Genomic Coordinates Reverse (-)

34219251 .. 34223357

Gene Structure 4107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGGAATACCAGTTTTCGTCTGGAGAGGGGAAGGATCAGGGGTCGTCTTCTGGAGCTGAGGTGGAGGGTTTGGTGCCACTGAGGAACTCGATTTCGGAGGATATGTTTATCAACATTGCTGAGTTTATGAATTTCGATTCTTATGCTGGATGGTGCAGCAGCCCGGGAACAATGGAGCAGATTGCGGCCGCGTATCCATCGGTGAGTTATGCTCCTTTGGATGCCTTGAACTTCACACAACAGAACGGTGGAACATTGCCTGTGACTGAAGATGGTGGGACTTTTGATGAGGCGGGGAGTTCTTTTGATTGTGGTGACAAGATTGTGTTTCGGCAAACCCAATACAGGGCGTCAACTGATTCCCACCACACTCATGATGCAGCTGCTAAACCGAAGAATGGTTCTTTTCAACAGAATAATGTCATGGATATGGCAGACTATGTGATCCCCAGGCCATATGGATGGTCACTTAATGAGAAGATGCTAAAGGCGTTGTCCTTTTTCAAGGAGTCTTTTGGTGGGGGAATTTTGGCACAAGTATGGGTTCCCATGAAGCATGGTGATCACTCCTTCTTAAGCACTTGCGAACAGCCCTATTTGCTTGACAATGTTCTTAAAGGGTATCGGGATGTGTCGAGGATGTTTACATTCGCTGCAGAAGAAACGCAGGGTACTAGCCTGGGGCTTCCTGGCCGTGTATTTGTCTCCAAAGTTCCAGAGTGGGCATCAAACGTTAGCTATTACAACAAGGACGAGTACCTGAGGGTGGAACATGCAGCTAATCATCAGGTCCGTGGATCAATTGCTTTGCCGGTTTTTGATCTGAACTCTGAGAAGTCATGTTGTGGTGTGTTTGAACTTGTCAGTACAAAAGATAAGCTCAACTTTGATGCAGAGATGAAGATGGTTTGTGAGGCCCTCCAGGCTGTGAAGTTGAGGACCACTACGCCTCCCCGACTTCATCCCCAGTGCCTCTCAAAGAACCAAAGGGTTGCTTTAACTGAAATTACTGATGTCTTACGAGCTGTGTGTCATGCACATACATTGCCGTTGGCTCTCACCTGGATTCCTTGTTGCTACTCTGAGGGTGATGCAGAGGAAATTAGAAGAGTACGTGTTCGAGGGGGTATTACAAAATCAAATGAAAAATGCATACTATGCATTGAGGAAACAGCTTGTTATATAAATGATAGAGCGATGCAAGGCTTTGTGCATGCTTGTGCTGAACATCATCTTGAGGAAGGAAATGGTATTGCTGGGAAAGCACTTCAATCAAATCATCCCTTCTTCATTCATGATGTGAAGGTGTATGACATATATGACTATCCACTAGTTCATCATGCACGCAGGTATGGTTTGAATGCTGCTGTTGCAATCAGACTAAGGAGCACCTACACTGGTGATGATGACTATATCTTAGAGTTTTTTCTGCCTGTTAATATAAAGGGCAGTTCTGAACAGCAACTTTTGTTAAACAACCTCTCGGGTACCATGCAGAGAATGTGTAAGAGTTTAAGGACAGTGTCAGATGCAGAATTGGCTGGGGTAGAAGGCTCCAACACTGGGTTTCAAAGGGAGGCAGTCTCAAATGCCCCACCAATCCCCAGGAGAGATTCTCAGACAACATCATCAGATAGTGAAATGAAGTTAACTGAGAAGATGCCCTCAAATGTTTATAATAGAAGAGATGGTGGAGTCAAAATAGATTTTCCTTCTGAACAGGCACCACTTGGATCAAGAAGGCAGGTGGAGAAAAAGCGTAGTACAGCAGAGAAAAATGTGAGCTTGAGTGTTCTACAGCAATACTTCTCTGGGAGTCTCAAGGATGCTGCAAAAAGCATTGGAGTCTGCCCCACTACACTAAAAAGGATCTGCAGACAACACGGGATCCCAAGATGGCCATCTCGCAAAATAAATAAGGTGAATCGTTCCTTGAAGAAAATACAAACTGTACTTGATTCTGTTCAGGGGGTGGAAGGAGGATTGAAGTATGACCCAACCACTGGAGGGTTTGTGGCAACAGGGTCTACCATCCAAGAGTTTGATGCACAGAAAAATCTTTTCTTCTCTGAGAAGAACTTGCCTGCTCAGAATATTGTTCCAGTTCCCAAATATCCAGTTTCAGTACCTTCAATGTTTTGTAATGATGGTAAGAGTTTGGATATTATGTTGGAAGAGGATGGCTGTTGTATGAATGAACGTATGTTGGTTCCATCTGCTCATCAGGCCAAGGAAGAGGTAAGTAAACAACACATCCCTGTGGTTGATTGTAGTATGGATTCCAAGCCGATTGCAATTGATTTTGGATCATGCCAGCCGACTGACCATGACATCCTTCCTCATACTTGTCCGGAAAGTGCTTTTGGGGTCTCATATTTGGTAAAAGAAGTCAACAAATGGGATCAAAGCAAGGGGAGTCCAAAATTAGAGAATTCTGACTGCCATGTTGTGTCTCAGAGCTCTTCTTCAAGCTTGACGCACTCATCAAATAGTTCTGGTTCAATGATGCATGGTTGTTCGTCGAGTTCTCAGAGCTTTGATGAGCGAAACTACCCTAAAGTCAAAGCAAGAAATGATGAGAATGGATCGAAAATCATTGTGAAAGCTACTTATAAAGAAGATACAATTAGGTTCAAGTTTGAGCCTTCAGGTGGATGTCTTAAACTGTACGAAGAAGTTGCAAAGAGGTTGAGGTTGCAAGATGGAACTTTCCAACTCAAGTATCTAGATGATGAACAAGAATGGGTGATGTTAGTCAGTGATGCAGATTTGCAGGAGTGCCTTGAGATATTGGATGACATTGGGACACGTAGTGTTAAGTTTATGGTTCGTGATATACCTTTTGATCTAAGCAGTTCCGGCAGTAGTAATTGTTTTCTGGCCCCGGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

964

Amino Acids

106.88

Weight (kDa)

5.83

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	323 - 506	2.3e-75	NLP protein GAF domain
RWP-RK	PF02042	594 - 640	2.3e-22	RWP-RK domain
PB1	PF00564	866 - 944	2e-18	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT2G43500 AT3G59580 AT3G59580 AT3G59580
fragaria_vesca	FvH4_1g24430 FvH4_1g24430 FvH4_1g24430
malus_domestica	MD04G1116200.v1.1 MD12G1131800.v1.1
prunus_persica	Prupe.1G200100_v2.0.a1
pyrus_communis	pycom04g10620 pycom12g12770
rosa_chinensis	RchiOBHm_Chr2g0121311
rosa_laevigata	RLG00000018617
rosa_multiflora	Rmu_sc0000079.1_g000028 Rmu_sc0000315.1_g000101
rosa_roxburghii	Rroxscaffold_2G00122460
rosa_rugosa	Rorug02G0233300 Rorug02G0233400 Rorug02G0233500
rosa_samantha	Rh2AG290100 Rh2BG301000 Rh2CG279700 Rh2DG314900
rosa_wichuraiana	Rw2G023260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1677, 2613
AarI	CACCTGC	1 cut(s)	1735
Acc36I	ACCTGC	2 cut(s)	1338, 1735
Acc65I	GGTACC	1 cut(s)	1487
AccB1I	GGYRCC	3 cut(s)	73, 1487, 1723
AccB7I	CCANNNNNTGG	1 cut(s)	2003
AccI	GTMKAC	1 cut(s)	2027
AccII	CGCG	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	2350
AciI	CCGC	3 cut(s)	185, 189, 293
AclI	AACGTT	1 cut(s)	732
AcoI	YGGCCR	3 cut(s)	186, 691, 1898
AcsI	RAATTY	3 cut(s)	130, 525, 2431
AcuI	CTGAAG	2 cut(s)	288, 2631
AcyI	GRCGYC	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	2813
AfaI	GTAC	9 cut(s)	673, 758, 868, 1113, 1489, 1765, 1953, 2127, 2669
AfiI	CCNNNNNNNGG	8 cut(s)	345, 346, 398, 766, 1563, 2003, 2007, 2651
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	2 cut(s)	1114, 2807
AhlI	ACTAGT	1 cut(s)	1330
AjnI	CCWGG	6 cut(s)	449, 678, 688, 921, 1061, 1604
AjuI	GAANNNNNNNTTGG	2 cut(s)	2346, 2378
Alw21I	GWGCWC	2 cut(s)	1391, 2462
Alw26I	GTCTC	5 cut(s)	709, 1588, 1823, 2374, 2457
Ama87I	CYCGRG	3 cut(s)	163, 1483, 2884
Aor13HI	TCCGGA	1 cut(s)	2350
AoxI	GGCC	7 cut(s)	186, 452, 691, 915, 1898, 2226, 2880
ApeKI	GCWGC	8 cut(s)	156, 159, 380, 383, 653, 776, 1364, 1829
ApoI	RAATTY	3 cut(s)	130, 525, 2431
Asp718I	GGTACC	1 cut(s)	1487
AspS9I	GGNCC	4 cut(s)	790, 916, 939, 2881
AsuC2I	CCSGG	4 cut(s)	164, 165, 2885, 2886
AsuHPI	GGTGA	8 cut(s)	214, 326, 572, 1051, 1100, 1412, 1933, 2758
AvaI	CYCGRG	3 cut(s)	163, 1483, 2884
AvaII	GGWCC	2 cut(s)	790, 939
AxyI	CCTNAGG	1 cut(s)	761
BaeI	ACNNNNGTAYC	2 cut(s)	2705, 2738
BalI	TGGCCA	1 cut(s)	1900
BamHI	GGATCC	1 cut(s)	1887
BanI	GGYRCC	3 cut(s)	73, 1487, 1723
BanII	GRGCYC	1 cut(s)	2462
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	1391, 2462
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	8 cut(s)	168, 171, 370, 392, 640, 788, 1351, 1816
BceAI	ACGGC	2 cut(s)	678, 1033
BcgI	CGANNNNNNTGC	4 cut(s)	125, 159, 2660, 2694
BciT130I	CCWGG	6 cut(s)	451, 680, 690, 923, 1063, 1606
BciVI	GTATCC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	4 cut(s)	164, 165, 2885, 2886
BcoDI	GTCTC	5 cut(s)	709, 1588, 1823, 2374, 2457
BcuI	ACTAGT	1 cut(s)	1330
BfaI	CTAG	3 cut(s)	675, 1331, 2726
BfmI	CTRYAG	3 cut(s)	654, 1796, 1873
BfrI	CTTAAG	1 cut(s)	574
BfuAI	ACCTGC	2 cut(s)	1338, 1735
BfuI	GTATCC	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	923
Bme18I	GGWCC	2 cut(s)	790, 939
BmeT110I	CYCGRG	3 cut(s)	163, 1483, 2884
BmgT120I	GGNCC	4 cut(s)	790, 916, 939, 2881
BmiI	GGNNCC	8 cut(s)	75, 546, 1489, 1555, 1725, 1889, 2211, 2883
BmrI	ACTGGG	2 cut(s)	961, 1572
BmuI	ACTGGG	2 cut(s)	961, 1572
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	6 cut(s)	196, 228, 1568, 1600, 1600, 1632
BpmI	CTGGAG	4 cut(s)	42, 72, 905, 2025
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	5 cut(s)	1256, 1805, 1807, 2702, 2804
BpuMI	CCSGG	4 cut(s)	164, 165, 2885, 2886
BsaAI	YACGTR	2 cut(s)	1115, 2810
BsaBI	GATNNNNATC	1 cut(s)	1900
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	2374
BsaJI	CCNNGG	8 cut(s)	163, 449, 679, 793, 1604, 2229, 2883, 2884
BsaWI	WCCGGW	1 cut(s)	2350
BsaXI	ACNNNNNCTCC	8 cut(s)	45, 75, 89, 119, 934, 964, 1998, 2028
Bsc4I	CCNNNNNNNGG	8 cut(s)	345, 346, 398, 766, 1563, 2003, 2007, 2651
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	7 cut(s)	10, 967, 1402, 1567, 2008, 2102, 2117
Bse21I	CCTNAGG	1 cut(s)	761
Bse3DI	GCAATG	3 cut(s)	114, 254, 1043
Bse8I	GATNNNNATC	1 cut(s)	1900
BseAI	TCCGGA	1 cut(s)	2350
BseBI	CCWGG	6 cut(s)	451, 680, 690, 923, 1063, 1606
BseDI	CCNNGG	8 cut(s)	163, 449, 679, 793, 1604, 2229, 2883, 2884
BseJI	GATNNNNATC	1 cut(s)	1900
BseLI	CCNNNNNNNGG	8 cut(s)	345, 346, 398, 766, 1563, 2003, 2007, 2651
BseMI	GCAATG	3 cut(s)	114, 254, 1043
BseNI	ACTGG	7 cut(s)	10, 967, 1402, 1567, 2008, 2102, 2117
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	8 cut(s)	168, 171, 370, 392, 640, 788, 1351, 1816
BseYI	CCCAGC	2 cut(s)	1256, 1541
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	7 cut(s)	188, 454, 693, 917, 1900, 2228, 2882
BshNI	GGYRCC	3 cut(s)	73, 1487, 1723
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	1391, 2462
BsiHKCI	CYCGRG	3 cut(s)	163, 1483, 2884
BsiSI	CCGG	5 cut(s)	164, 812, 2351, 2859, 2885
BslFI	GGGAC	2 cut(s)	292, 2818
BslI	CCNNNNNNNGG	8 cut(s)	345, 346, 398, 766, 1563, 2003, 2007, 2651
BsmAI	GTCTC	5 cut(s)	709, 1588, 1823, 2374, 2457
BsmFI	GGGAC	2 cut(s)	292, 2818
BsmI	GAATGC	1 cut(s)	1366
BsnI	GGCC	7 cut(s)	188, 454, 693, 917, 1900, 2228, 2882
Bso31I	GGTCTC	1 cut(s)	2374
BsoBI	CYCGRG	3 cut(s)	163, 1483, 2884
Bsp1286I	GDGCHC	2 cut(s)	1391, 2462
Bsp13I	TCCGGA	1 cut(s)	2350
BspACI	CCGC	3 cut(s)	185, 189, 293
BspANI	GGCC	7 cut(s)	188, 454, 693, 917, 1900, 2228, 2882
BspEI	TCCGGA	1 cut(s)	2350
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	2 cut(s)	373, 1294
BspLI	GGNNCC	8 cut(s)	75, 546, 1489, 1555, 1725, 1889, 2211, 2883
BspMAI	CTGCAG	2 cut(s)	658, 1877
BspMI	ACCTGC	2 cut(s)	1338, 1735
BspQI	GCTCTTC	1 cut(s)	2467
BspT107I	GGYRCC	3 cut(s)	73, 1487, 1723
BspTI	CTTAAG	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	2374
BsrDI	GCAATG	3 cut(s)	114, 254, 1043
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	7 cut(s)	10, 967, 1402, 1567, 2008, 2102, 2117
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	8 cut(s)	163, 449, 679, 793, 1604, 2229, 2883, 2884
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	2229
Bst2UI	CCWGG	6 cut(s)	451, 680, 690, 923, 1063, 1606
Bst4CI	ACNGT	4 cut(s)	248, 1522, 1951, 2667
Bst6I	CTCTTC	5 cut(s)	1102, 1678, 2169, 2229, 2467
BstACI	GRCGYC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	1158
BstBAI	YACGTR	2 cut(s)	1115, 2810
BstC8I	GCNNGC	4 cut(s)	1215, 1345, 2085, 2315
BstDSI	CCRYGG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	191
BstMAI	GTCTC	5 cut(s)	709, 1588, 1823, 2374, 2457
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	8 cut(s)	598, 923, 1158, 1262, 1370, 1538, 2225, 2859
BstNI	CCWGG	6 cut(s)	451, 680, 690, 923, 1063, 1606
BstNSI	RCATGY	2 cut(s)	776, 1217
BstSFI	CTRYAG	3 cut(s)	654, 1796, 1873
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	8 cut(s)	168, 171, 370, 392, 640, 788, 1351, 1816
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	3 cut(s)	1869, 1887, 2888
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	3 cut(s)	1869, 1887, 2888
BstZI	CGGCCG	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	7 cut(s)	188, 454, 693, 917, 1900, 2228, 2882
BtgI	CCRYGG	1 cut(s)	793
BtgZI	GCGATG	1 cut(s)	1211
BtsIMutI	CAGTG	7 cut(s)	77, 974, 1395, 1527, 1560, 2001, 2764
BveI	ACCTGC	2 cut(s)	1338, 1735
Cac8I	GCNNGC	4 cut(s)	1215, 1345, 2085, 2315
CciI	TCATGA	2 cut(s)	373, 1294
CciNI	GCGGCCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	811
Cfr13I	GGNCC	4 cut(s)	790, 916, 939, 2881
Cfr9I	CCCGGG	2 cut(s)	163, 2884
CseI	GACGC	2 cut(s)	339, 2485
Csp6I	GTAC	9 cut(s)	672, 757, 867, 1112, 1488, 1764, 1952, 2126, 2668
CviQI	GTAC	9 cut(s)	672, 757, 867, 1112, 1488, 1764, 1952, 2126, 2668
DraIII	CACNNNGTG	1 cut(s)	2813
EaeI	YGGCCR	3 cut(s)	186, 691, 1898
EagI	CGGCCG	1 cut(s)	186
Eam1104I	CTCTTC	5 cut(s)	1102, 1678, 2169, 2229, 2467
EarI	CTCTTC	5 cut(s)	1102, 1678, 2169, 2229, 2467
Ecl136II	GAGCTC	1 cut(s)	2460
EclXI	CGGCCG	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	2229
Eco24I	GRGCYC	1 cut(s)	2462
Eco31I	GGTCTC	1 cut(s)	2374
Eco47I	GGWCC	2 cut(s)	790, 939
Eco52I	CGGCCG	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	2460
Eco57I	CTGAAG	2 cut(s)	288, 2631
Eco81I	CCTNAGG	1 cut(s)	761
Eco88I	CYCGRG	3 cut(s)	163, 1483, 2884
EcoICRI	GAGCTC	1 cut(s)	2460
EcoO109I	RGGNCCY	1 cut(s)	916
EcoRI	GAATTC	1 cut(s)	2431
EcoRII	CCWGG	6 cut(s)	449, 678, 688, 921, 1061, 1604
EcoT14I	CCWWGG	1 cut(s)	2229
EcoT22I	ATGCAT	3 cut(s)	1154, 1163, 2511
EcoT38I	GRGCYC	1 cut(s)	2462
ErhI	CCWWGG	1 cut(s)	2229
FalI	AAGNNNNNCTT	4 cut(s)	869, 901, 979, 1011
FaqI	GGGAC	2 cut(s)	292, 2818
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	2027
FriOI	GRGCYC	1 cut(s)	2462
FspBI	CTAG	3 cut(s)	675, 1331, 2726
GsaI	CCCAGC	2 cut(s)	1260, 1545
GsuI	CTGGAG	4 cut(s)	42, 72, 905, 2025
HaeIII	GGCC	7 cut(s)	188, 454, 693, 917, 1900, 2228, 2882
HapII	CCGG	5 cut(s)	164, 812, 2351, 2859, 2885
HgaI	GACGC	2 cut(s)	339, 2485
Hin1I	GRCGYC	1 cut(s)	350
HincII	GTYRAC	3 cut(s)	354, 1650, 2392
HindII	GTYRAC	3 cut(s)	354, 1650, 2392
HindIII	AAGCTT	1 cut(s)	2470
HpaI	GTTAAC	1 cut(s)	1650
HpaII	CCGG	5 cut(s)	164, 812, 2351, 2859, 2885
HphI	GGTGA	8 cut(s)	214, 326, 572, 1051, 1100, 1412, 1933, 2758
Hpy166II	GTNNAC	6 cut(s)	354, 645, 1650, 2028, 2246, 2392
Hpy8I	GTNNAC	6 cut(s)	354, 645, 1650, 2028, 2246, 2392
Hpy99I	CGWCG	1 cut(s)	2524
HpyCH4III	ACNGT	4 cut(s)	248, 1522, 1951, 2667
HpyCH4IV	ACGT	4 cut(s)	732, 1114, 2200, 2809
HpyF10VI	GCNNNNNNNGC	8 cut(s)	598, 923, 1158, 1262, 1370, 1538, 2225, 2859
HpySE526I	ACGT	4 cut(s)	732, 1114, 2200, 2809
Hsp92I	GRCGYC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	2350
KpnI	GGTACC	1 cut(s)	1491
Ksp22I	TGATCA	1 cut(s)	562
KspAI	GTTAAC	1 cut(s)	1650
LguI	GCTCTTC	1 cut(s)	2467
LmnI	GCTCC	5 cut(s)	53, 175, 217, 1386, 1559
Lsp1109I	GCAGC	8 cut(s)	168, 171, 370, 392, 640, 788, 1351, 1816
MaeI	CTAG	3 cut(s)	675, 1331, 2726
MaeII	ACGT	4 cut(s)	732, 1114, 2200, 2809
MaeIII	GTNAC	3 cut(s)	262, 314, 465
MfeI	CAATTG	2 cut(s)	801, 2295
MflI	RGATCY	3 cut(s)	1869, 1887, 2888
MhlI	GDGCHC	2 cut(s)	1391, 2462
MlsI	TGGCCA	1 cut(s)	1900
MluNI	TGGCCA	1 cut(s)	1900
MlyI	GAGTC	5 cut(s)	518, 1704, 1825, 1854, 2425
MmeI	TCCRAC	3 cut(s)	1581, 2151, 2737
Mox20I	TGGCCA	1 cut(s)	1900
Mph1103I	ATGCAT	3 cut(s)	1154, 1163, 2511
MroI	TCCGGA	1 cut(s)	2350
MscI	TGGCCA	1 cut(s)	1900
MslI	CAYNNNNRTG	6 cut(s)	372, 428, 460, 538, 1218, 2258
Msp20I	TGGCCA	1 cut(s)	1900
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	5 cut(s)	164, 812, 2351, 2859, 2885
MunI	CAATTG	2 cut(s)	801, 2295
Mva1269I	GAATGC	1 cut(s)	1366
MvaI	CCWGG	6 cut(s)	451, 680, 690, 923, 1063, 1606
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	8 cut(s)	598, 923, 1158, 1262, 1370, 1538, 2225, 2859
NciI	CCSGG	4 cut(s)	164, 165, 2885, 2886
NdeI	CATATG	1 cut(s)	457
NlaIV	GGNNCC	8 cut(s)	75, 546, 1489, 1555, 1725, 1889, 2211, 2883
NmuCI	GTSAC	3 cut(s)	262, 314, 465
NotI	GCGGCCGC	1 cut(s)	186
NsiI	ATGCAT	3 cut(s)	1154, 1163, 2511
NspI	RCATGY	2 cut(s)	776, 1217
PaeI	GCATGC	1 cut(s)	1217
PagI	TCATGA	2 cut(s)	373, 1294
PaqCI	CACCTGC	1 cut(s)	1735
PciSI	GCTCTTC	1 cut(s)	2467
PctI	GAATGC	1 cut(s)	1366
PfeI	GAWTC	7 cut(s)	137, 359, 1066, 1613, 1924, 1958, 2279
PflFI	GACNNNGTC	1 cut(s)	1522
PflMI	CCANNNNNTGG	1 cut(s)	2003
PleI	GAGTC	5 cut(s)	517, 1703, 1824, 1853, 2424
PpsI	GAGTC	5 cut(s)	517, 1703, 1824, 1853, 2424
Ppu21I	YACGTR	2 cut(s)	1115, 2810
PsiI	TTATAA	2 cut(s)	1677, 2613
Psp124BI	GAGCTC	1 cut(s)	2462
Psp1406I	AACGTT	1 cut(s)	732
Psp6I	CCWGG	6 cut(s)	449, 678, 688, 921, 1061, 1604
PspFI	CCCAGC	2 cut(s)	1256, 1541
PspGI	CCWGG	6 cut(s)	449, 678, 688, 921, 1061, 1604
PspN4I	GGNNCC	8 cut(s)	75, 546, 1489, 1555, 1725, 1889, 2211, 2883
PspPI	GGNCC	4 cut(s)	790, 916, 939, 2881
PstI	CTGCAG	2 cut(s)	658, 1877
PsuI	RGATCY	3 cut(s)	1869, 1887, 2888
PsyI	GACNNNGTC	1 cut(s)	1522
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	9 cut(s)	673, 758, 868, 1113, 1489, 1765, 1953, 2127, 2669
RsaNI	GTAC	9 cut(s)	672, 757, 867, 1112, 1488, 1764, 1952, 2126, 2668
RseI	CAYNNNNRTG	6 cut(s)	372, 428, 460, 538, 1218, 2258
SacI	GAGCTC	1 cut(s)	2462
SapI	GCTCTTC	1 cut(s)	2467
Sau96I	GGNCC	4 cut(s)	790, 916, 939, 2881
SchI	GAGTC	5 cut(s)	518, 1704, 1825, 1854, 2425
SduI	GDGCHC	2 cut(s)	1391, 2462
SfcI	CTRYAG	3 cut(s)	654, 1796, 1873
SinI	GGWCC	2 cut(s)	790, 939
SmaI	CCCGGG	2 cut(s)	165, 2886
SmiMI	CAYNNNNRTG	6 cut(s)	372, 428, 460, 538, 1218, 2258
SmlI	CTYRAG	6 cut(s)	574, 1235, 1786, 1820, 2717, 2783
SmoI	CTYRAG	6 cut(s)	574, 1235, 1786, 1820, 2717, 2783
SpeI	ACTAGT	1 cut(s)	1330
SphI	GCATGC	1 cut(s)	1217
SsiI	CCGC	3 cut(s)	185, 189, 293
SspI	AATATT	1 cut(s)	2095
SspMI	CTAG	3 cut(s)	675, 1331, 2726
SstI	GAGCTC	1 cut(s)	2462
StyI	CCWWGG	1 cut(s)	2229
TaaI	ACNGT	4 cut(s)	248, 1522, 1951, 2667
TaiI	ACGT	4 cut(s)	735, 1117, 2203, 2812
TaqI	TCGA	6 cut(s)	89, 135, 635, 1120, 2522, 2588
TatI	WGTACW	3 cut(s)	866, 1763, 1951
TauI	GCSGC	2 cut(s)	188, 191
TfiI	GAWTC	7 cut(s)	137, 359, 1066, 1613, 1924, 1958, 2279
TscAI	CASTG	7 cut(s)	84, 974, 1402, 1527, 1567, 2008, 2764
TseFI	GTSAC	3 cut(s)	262, 314, 465
TseI	GCWGC	8 cut(s)	156, 159, 380, 383, 653, 776, 1364, 1829
Tsp45I	GTSAC	3 cut(s)	262, 314, 465
TspGWI	ACGGA	1 cut(s)	782
TspMI	CCCGGG	2 cut(s)	163, 2884
TspRI	CASTG	7 cut(s)	84, 974, 1402, 1527, 1567, 2008, 2764
Tth111I	GACNNNGTC	1 cut(s)	1522
Van91I	CCANNNNNTGG	1 cut(s)	2003
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	790, 939
XapI	RAATTY	3 cut(s)	130, 525, 2431
XbaI	TCTAGA	1 cut(s)	2725
XceI	RCATGY	2 cut(s)	776, 1217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmaI	CCCGGG	2 cut(s)	163, 2884
XmiI	GTMKAC	1 cut(s)	2027
XspI	CTAG	3 cut(s)	675, 1331, 2726
Zsp2I	ATGCAT	3 cut(s)	1154, 1163, 2511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.