RchiOBHm_Chr2g0125341

Plant protein 1589 of unknown function (A_thal_3526)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003012
Physical Location & Seq
Forward (+)
38936294 .. 38943618
7325 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGTCAAGTGGACCAGTTAGACGTGTCTCACGTCAAGATATACAACTGGTGCAAAACCTTATTGAGCGATGCCTTCAGCTCTACATGAACCAGAAGGAAGTGGTGGAAACTCTACTGGAACAAGCAAAAATAGAGCCTGGTTTCACGGAACTTGTTTGGCAGAAGCTTGAGGAAGAGAATCGAGAATTCTTCAGGGCTTATTACCTGAGGTTAATGGTAAAGCAACAAATAATAGAATATAACAGGTTGCTTGAACAACAGGCGCGGTTGATGCACCAGTTACACTCGACAGGAGTTTCTTCAATTCCTACCTCCAATGGATCTCATATCCCATCGATGCATCAAAACTCAACATGCTATCCCCCAGACAGTGTGGGACCAGCATTGAAGACAGAAAACTTACACCATCAAGTTGGTTCCTGCTTACCTAATCCATTTACTAATGGCGCGTCTTCATTGCACAATAGTATGGAGAATGCTGTTAAAATGTCTGCTCATACCAACAGGATTGATGTCCCACCAAACATGCTTTCGACTCAGAGCACCAACATGGGGGGGCTGATGCAAGGAATGAATGGGGGAATTATAAAATCAGAAGTTGGATATTCAGGCACTTCTTACATGTATGGTGCTGATGGCAGCAACCTGGAAACACGGCCCAATATGGGAGATGCTTCTGTTGCACCTTTCAATAGCGTAGAGTCCAATTCACAACCCCTAAATGAATCACTTCTTGATTCAGACTCTTCCTCGTTTGGTTTATTAAGTCAGATTCCTCGAAGTTTCAGCCTCTCAGATCTGACATTGGATTTTTCTCAAAGTTCAGATATATTGGAGAGCTATCCTCGATCACCTTTCTTGGCTGCAGATAATGAAAACTTCATGGAGTCTCGTGAAAGAGAACATCAAGGAGACAATAACAGGCTGGACACCATTTCAGAAGGCGTAAGTTATGAAGATTTTGGCAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A_thal_3526

Protein Analysis

324

Amino Acids

36.13

Weight (kDa)

4.92

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_thal_3526 PF09713 17 - 68 5.7e-26 Plant protein 1589 of unknown function (A_thal_3526)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccII CGCG 2 cut(s) 265, 449
AciI CCGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 59, 175
AfiI CCNNNNNNNGG 2 cut(s) 552, 665
AflIII ACRYGT 2 cut(s) 22, 621
AgsI TTSAA 4 cut(s) 254, 303, 388, 691
AjiI CACGTC 2 cut(s) 23, 32
AjnI CCWGG 2 cut(s) 136, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 3 cut(s) 79, 166, 840
AluI AGCT 3 cut(s) 79, 166, 840
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 3 cut(s) 31, 894, 906
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 639, 863
ApoI RAATTY 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 729
AspLEI GCGC 2 cut(s) 265, 449
AspS9I GGNCC 3 cut(s) 11, 377, 657
AsuHPI GGTGA 1 cut(s) 843
AvaII GGWCC 2 cut(s) 11, 377
AxyI CCTNAGG 1 cut(s) 206
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 395, 444
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 651, 850
BccI CCATC 3 cut(s) 340, 414, 629
BceAI ACGGC 1 cut(s) 671
BciT130I CCWGG 2 cut(s) 138, 647
BcoDI GTCTC 3 cut(s) 31, 894, 906
BfmI CTRYAG 1 cut(s) 864
BglII AGATCT 1 cut(s) 796
BisI GCNGC 2 cut(s) 640, 864
BlsI GCNGC 2 cut(s) 641, 865
Bme1390I CCNGG 2 cut(s) 138, 647
Bme18I GGWCC 2 cut(s) 11, 377
BmgBI CACGTC 2 cut(s) 23, 32
BmgT120I GGNCC 3 cut(s) 11, 377, 657
BmiI GGNNCC 2 cut(s) 378, 418
BmrFI CCNGG 2 cut(s) 138, 647
BmsI GCATC 6 cut(s) 59, 261, 327, 349, 552, 661
BpiI GAAGAC 2 cut(s) 395, 444
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpuEI CTTGAG 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 665
Bse1I ACTGG 4 cut(s) 14, 51, 120, 277
Bse21I CCTNAGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 2 cut(s) 138, 647
BseCI ATCGAT 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 552, 665
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 3 cut(s) 197, 551, 807
BseNI ACTGG 4 cut(s) 14, 51, 120, 277
BseXI GCAGC 2 cut(s) 651, 850
Bsh1236I CGCG 2 cut(s) 265, 449
BshFI GGCC 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 545
BslFI GGGAC 2 cut(s) 390, 500
BslI CCNNNNNNNGG 2 cut(s) 552, 665
BsmAI GTCTC 3 cut(s) 31, 894, 906
BsmFI GGGAC 2 cut(s) 390, 500
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 3 cut(s) 320, 796, 848
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 3 cut(s) 198, 550, 806
BspDI ATCGAT 1 cut(s) 335
BspFNI CGCG 2 cut(s) 265, 449
BspLI GGNNCC 2 cut(s) 378, 418
BspMAI CTGCAG 1 cut(s) 868
BspPI GGATC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 4 cut(s) 14, 51, 120, 277
BssMI GATC 3 cut(s) 320, 796, 848
BssSI CACGAG 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 138, 647
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 168, 751
BstDEI CTNAG 3 cut(s) 206, 537, 793
BstFNI CGCG 2 cut(s) 265, 449
BstHHI GCGC 2 cut(s) 265, 449
BstKTI GATC 3 cut(s) 323, 799, 851
BstMAI GTCTC 3 cut(s) 31, 894, 906
BstMBI GATC 3 cut(s) 320, 796, 848
BstMWI GCNNNNNNNGC 2 cut(s) 271, 680
BstNI CCWGG 2 cut(s) 138, 647
BstNSI RCATGY 3 cut(s) 357, 529, 625
BstSCI CCNGG 2 cut(s) 136, 645
BstSFI CTRYAG 1 cut(s) 864
BstUI CGCG 2 cut(s) 265, 449
BstV1I GCAGC 2 cut(s) 651, 850
BstV2I GAAGAC 2 cut(s) 395, 444
BstX2I RGATCY 2 cut(s) 320, 796
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 2 cut(s) 320, 796
Bsu15I ATCGAT 1 cut(s) 335
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 658
BsuTUI ATCGAT 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 82
BtrI CACGTC 2 cut(s) 23, 32
BtsI GCAGTG 1 cut(s) 973
BtsIMutI CAGTG 2 cut(s) 376, 973
CfoI GCGC 2 cut(s) 265, 449
Cfr13I GGNCC 3 cut(s) 11, 377, 657
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 1 cut(s) 438
CviAII CATG 6 cut(s) 85, 354, 526, 550, 622, 883
DdeI CTNAG 3 cut(s) 206, 537, 793
DpnI GATC 3 cut(s) 322, 798, 850
DpnII GATC 3 cut(s) 320, 796, 848
Eam1104I CTCTTC 2 cut(s) 168, 751
EarI CTCTTC 2 cut(s) 168, 751
Eco47I GGWCC 2 cut(s) 11, 377
Eco57I CTGAAG 2 cut(s) 59, 175
Eco81I CCTNAGG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 136, 645
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 6 cut(s) 88, 357, 529, 553, 625, 886
FaqI GGGAC 2 cut(s) 390, 500
FatI CATG 6 cut(s) 84, 353, 525, 549, 621, 882
Fnu4HI GCNGC 2 cut(s) 640, 864
Fsp4HI GCNGC 2 cut(s) 640, 864
GlaI GCGC 2 cut(s) 264, 448
GluI GCNGC 2 cut(s) 640, 864
HaeIII GGCC 1 cut(s) 658
HgaI GACGC 1 cut(s) 438
HhaI GCGC 2 cut(s) 265, 449
Hin1II CATG 6 cut(s) 88, 357, 529, 553, 625, 886
Hin6I GCGC 2 cut(s) 263, 447
HinP1I GCGC 2 cut(s) 263, 447
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 8 cut(s) 178, 535, 701, 725, 737, 743, 772, 887
HphI GGTGA 1 cut(s) 843
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 8 cut(s) 540, 595, 742, 771, 796, 801, 826, 940
Hpy188III TCNNGA 4 cut(s) 35, 182, 734, 893
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 83, 88, 935
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 2 cut(s) 22, 31
HpyCH4V TGCA 7 cut(s) 52, 274, 340, 460, 565, 683, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 680
HpyF3I CTNAG 3 cut(s) 206, 537, 793
HpySE526I ACGT 2 cut(s) 22, 31
Hsp92II CATG 6 cut(s) 88, 357, 529, 553, 625, 886
HspAI GCGC 2 cut(s) 263, 447
Kzo9I GATC 3 cut(s) 320, 796, 848
Lsp1109I GCAGC 2 cut(s) 651, 850
LweI GCATC 6 cut(s) 59, 261, 327, 349, 552, 661
MaeII ACGT 2 cut(s) 22, 31
MaeIII GTNAC 1 cut(s) 279
MalI GATC 3 cut(s) 322, 798, 850
MboI GATC 3 cut(s) 320, 796, 848
MboII GAAGA 7 cut(s) 181, 185, 291, 400, 444, 738, 968
MflI RGATCY 2 cut(s) 320, 796
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 4 cut(s) 185, 303, 582, 706
MlyI GAGTC 4 cut(s) 529, 710, 737, 896
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 7 cut(s) 163, 201, 322, 760, 786, 800, 855
Mph1103I ATGCAT 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 729
MseI TTAA 3 cut(s) 212, 483, 764
MslI CAYNNNNRTG 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 138, 647
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 2 cut(s) 138, 647
MvnI CGCG 2 cut(s) 265, 449
MwoI GCNNNNNNNGC 2 cut(s) 271, 680
NdeII GATC 3 cut(s) 320, 796, 848
NlaIII CATG 6 cut(s) 88, 357, 529, 553, 625, 886
NlaIV GGNNCC 2 cut(s) 378, 418
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 3 cut(s) 357, 529, 625
PciI ACATGT 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 4 cut(s) 178, 725, 737, 772
PkrI GCNGC 2 cut(s) 641, 865
PleI GAGTC 4 cut(s) 529, 709, 737, 895
PpsI GAGTC 4 cut(s) 529, 709, 737, 895
PscI ACATGT 1 cut(s) 621
PsiI TTATAA 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 136, 645
PspGI CCWGG 2 cut(s) 136, 645
PspN4I GGNNCC 2 cut(s) 378, 418
PspPI GGNCC 3 cut(s) 11, 377, 657
PstI CTGCAG 1 cut(s) 868
PsuI RGATCY 2 cut(s) 320, 796
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 3 cut(s) 212, 483, 764
SatI GCNGC 2 cut(s) 640, 864
Sau3AI GATC 3 cut(s) 320, 796, 848
Sau96I GGNCC 3 cut(s) 11, 377, 657
SchI GAGTC 4 cut(s) 529, 710, 737, 896
ScrFI CCNGG 2 cut(s) 138, 647
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 6 cut(s) 59, 261, 327, 349, 552, 661
SfcI CTRYAG 1 cut(s) 864
SinI GGWCC 2 cut(s) 11, 377
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 4 cut(s) 185, 303, 582, 706
SsiI CCGC 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 136, 645
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 2 cut(s) 25, 34
TaqI TCGA 6 cut(s) 181, 287, 335, 533, 778, 847
TasI AATT 4 cut(s) 185, 303, 582, 706
TfiI GAWTC 4 cut(s) 178, 725, 737, 772
Tru1I TTAA 3 cut(s) 212, 483, 764
Tru9I TTAA 3 cut(s) 212, 483, 764
TscAI CASTG 2 cut(s) 376, 973
TseI GCWGC 2 cut(s) 639, 863
TspDTI ATGAA 7 cut(s) 101, 444, 587, 738, 871, 888, 969
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 376, 973
VpaK11BI GGWCC 2 cut(s) 11, 377
XapI RAATTY 1 cut(s) 185
XceI RCATGY 3 cut(s) 357, 529, 625
XmnI GAANNNNTTC 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.